Wall clock time and date at job start Tue Mar 31 2020 19:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46767 * 2 1 4 4 C 1.50706 * 109.46608 * 180.02562 * 3 2 1 5 5 C 1.35363 * 126.38669 * 85.00330 * 4 3 2 6 6 C 1.41506 * 105.50472 * 180.02562 * 5 4 3 7 7 C 1.47710 * 126.52020 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99639 * 352.88843 * 7 6 5 9 9 N 1.34774 * 120.00028 * 172.88711 * 7 6 5 10 10 C 1.46929 * 120.63017 * 353.01122 * 9 7 6 11 11 C 1.53182 * 108.77722 * 233.63120 * 10 9 7 12 12 C 1.53041 * 109.31411 * 305.37065 * 11 10 9 13 13 H 1.09003 * 109.45623 * 301.33818 * 12 11 10 14 14 C 1.53007 * 109.46130 * 181.38817 * 12 11 10 15 15 N 1.46498 * 109.47118 * 64.99359 * 14 12 11 16 16 C 1.36944 * 119.99707 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99571 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99766 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00330 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47187 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47504 * 120.00025 * 20 18 16 23 23 H 1.48500 * 109.47279 * 240.00363 * 20 18 16 24 24 C 1.53038 * 109.54114 * 61.36556 * 12 11 10 25 25 H 1.08996 * 109.49992 * 58.62001 * 24 12 11 26 26 C 1.52999 * 109.49713 * 178.68836 * 24 12 11 27 27 C 1.46923 * 120.62706 * 173.03943 * 9 7 6 28 28 N 1.31809 * 106.95953 * 0.24105 * 6 5 4 29 29 N 1.28462 * 110.07670 * 359.59071 * 28 6 5 30 30 H 0.97007 * 124.88855 * 180.20839 * 29 28 6 31 31 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47382 * 299.99914 * 1 2 3 33 33 H 1.08994 * 109.47281 * 60.00191 * 1 2 3 34 34 H 1.08999 * 109.46649 * 240.00116 * 2 1 3 35 35 H 1.09001 * 109.46696 * 120.00041 * 2 1 3 36 36 H 1.08999 * 109.47441 * 60.00601 * 3 2 1 37 37 H 1.09001 * 109.47546 * 299.99520 * 3 2 1 38 38 H 1.07997 * 127.25022 * 359.97438 * 5 4 3 39 39 H 1.09001 * 109.58364 * 113.84517 * 10 9 7 40 40 H 1.09001 * 109.58598 * 353.42493 * 10 9 7 41 41 H 1.09001 * 109.50086 * 65.31952 * 11 10 9 42 42 H 1.09003 * 109.49874 * 185.38086 * 11 10 9 43 43 H 1.09002 * 109.47015 * 184.99746 * 14 12 11 44 44 H 1.09003 * 109.46802 * 304.99561 * 14 12 11 45 45 H 0.96996 * 120.00004 * 0.02562 * 15 14 12 46 46 H 0.97007 * 120.00569 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.47797 * 59.99555 * 26 24 12 48 48 H 1.09001 * 109.47123 * 179.97438 * 26 24 12 49 49 H 1.09001 * 109.46927 * 299.99204 * 26 24 12 50 50 H 1.08991 * 109.59231 * 6.58161 * 27 9 7 51 51 H 1.08997 * 109.70176 * 246.21906 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3495 1.3476 -1.0866 6 6 5.6719 1.3909 -0.5846 7 6 6.9159 1.3209 -1.3778 8 8 6.8646 1.0858 -2.5695 9 7 8.1080 1.5176 -0.7805 10 6 8.1802 1.9519 0.6213 11 6 9.0523 3.2086 0.7038 12 6 10.4126 2.9237 0.0630 13 1 10.8895 2.0904 0.5789 14 6 11.2987 4.1661 0.1744 15 7 11.5839 4.4375 1.5855 16 6 12.3646 5.5077 1.9327 17 1 12.7696 6.1518 1.1662 18 6 12.6353 5.7646 3.2696 19 7 12.1421 4.9793 4.2036 20 14 13.6995 7.2249 3.7433 21 1 14.1263 7.9450 2.5166 22 1 12.9205 8.1446 4.6107 23 1 14.8975 6.7464 4.4790 24 6 10.2187 2.5664 -1.4124 25 1 9.7199 3.3898 -1.9236 26 6 11.5816 2.3138 -2.0600 27 6 9.3598 1.3023 -1.5189 28 7 5.5823 1.4996 0.7259 29 7 4.3485 1.5364 1.0821 30 1 4.0374 1.6167 1.9974 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.0449 1.2572 -2.1187 39 1 8.6218 1.1603 1.2267 40 1 7.1782 2.1778 0.9860 41 1 8.5640 4.0258 0.1728 42 1 9.1926 3.4861 1.7485 43 1 12.2338 3.9944 -0.3588 44 1 10.7827 5.0208 -0.2629 45 1 11.2205 3.8587 2.2738 46 1 12.3310 5.1590 5.1380 47 1 12.0795 1.4897 -1.5493 48 1 11.4430 2.0589 -3.1107 49 1 12.1933 3.2126 -1.9815 50 1 9.1361 1.0998 -2.5662 51 1 9.8986 0.4574 -1.0902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184911411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:25 Heat of formation + Delta-G solvation = 15.900857 kcal Electronic energy + Delta-G solvation = -29001.255284 eV Core-core repulsion = 25129.042819 eV Total energy + Delta-G solvation = -3872.212465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.78015 -41.16056 -39.15191 -36.60079 -36.23506 -35.04154 -33.53640 -32.78678 -32.01333 -31.89854 -28.44263 -28.10695 -27.28791 -25.79742 -24.63360 -23.47524 -22.88738 -22.62429 -21.91933 -21.05016 -19.96206 -19.14942 -18.85427 -17.65948 -17.10732 -16.90917 -16.71052 -16.02437 -15.92788 -15.70179 -15.48997 -15.35152 -15.15975 -14.81885 -14.56389 -14.46528 -14.23451 -14.04473 -13.92840 -13.88082 -13.13021 -13.07384 -12.94340 -12.89662 -12.79804 -12.70168 -12.44716 -12.15397 -12.12065 -12.01593 -11.90511 -11.87451 -11.63598 -11.54380 -11.40380 -11.18167 -11.00364 -10.79271 -10.45964 -9.94111 -9.65719 -8.95967 -7.94214 -5.21971 0.44715 1.09090 1.47027 1.47422 1.57632 1.74166 2.11284 2.28742 2.56228 3.24126 3.39010 3.63256 3.67207 3.76115 3.86194 3.92017 4.03859 4.14730 4.18954 4.27044 4.33614 4.44333 4.45668 4.53387 4.57465 4.63991 4.68363 4.70967 4.77938 4.81726 4.86271 4.92808 4.98153 4.99817 5.01702 5.11782 5.12402 5.19486 5.24578 5.27330 5.33204 5.35661 5.41081 5.48453 5.48771 5.54335 5.62414 6.10766 6.28610 6.30494 6.80416 7.07547 7.35006 8.11546 8.35987 9.29424 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.002406 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.589239 B =11635.797863 C =13223.889926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.048 4.048 4 C 0.041 3.959 5 C -0.196 4.196 6 C -0.033 4.033 7 C 0.596 3.404 8 O -0.571 6.571 9 N -0.595 5.595 10 C 0.097 3.903 11 C -0.115 4.115 12 C -0.079 4.079 13 H 0.069 0.931 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.087 4.087 25 H 0.064 0.936 26 C -0.143 4.143 27 C 0.119 3.881 28 N -0.267 5.267 29 N -0.367 5.367 30 H 0.460 0.540 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.163 0.837 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.009 0.991 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.090 0.910 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.127 -11.483 -9.195 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.086 4.086 4 C -0.086 4.086 5 C -0.224 4.224 6 C -0.191 4.191 7 C 0.384 3.616 8 O -0.449 6.449 9 N -0.326 5.326 10 C -0.026 4.026 11 C -0.154 4.154 12 C -0.098 4.098 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.384 5.384 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.107 4.107 25 H 0.082 0.918 26 C -0.200 4.200 27 C -0.003 4.003 28 N -0.104 5.104 29 N -0.083 5.083 30 H 0.308 0.692 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.181 0.819 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.027 0.973 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.108 0.892 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.363 -11.386 -8.955 26.644 hybrid contribution 0.262 0.709 0.601 0.965 sum -22.101 -10.677 -8.355 25.928 Atomic orbital electron populations 1.21764 0.94279 1.02219 1.02617 1.21508 0.96747 0.95091 1.02356 1.20388 0.83597 0.98829 1.05814 1.21818 0.96300 1.04267 0.86181 1.21650 0.89925 1.10008 1.00845 1.21806 0.95133 1.11696 0.90494 1.17313 0.82332 0.76225 0.85697 1.90727 1.86909 1.51994 1.15307 1.48033 1.05363 1.65439 1.13741 1.22446 1.03930 0.95828 0.80377 1.21792 0.95195 0.97309 1.01091 1.21241 0.95159 0.97479 0.95919 0.91275 1.20887 0.96121 0.94644 0.85271 1.42564 1.60512 1.32592 1.02766 1.19652 1.22094 1.04011 0.91701 0.90993 1.25528 1.03209 1.02202 0.95850 1.69813 1.51155 1.41314 0.99561 0.85097 0.77931 0.79012 0.77866 1.19288 1.22020 1.21964 1.21351 0.97061 0.97419 0.94836 0.91754 1.21796 0.95025 1.02308 1.00900 1.21775 0.83070 0.97499 0.97950 1.73362 1.02481 1.20182 1.14347 1.43606 1.02339 1.51295 1.11022 0.69236 0.92532 0.91820 0.92041 0.92213 0.92071 0.88208 0.87974 0.81915 0.90972 0.85478 0.93068 0.91713 0.95289 0.97320 0.79252 0.94021 0.91915 0.90986 0.92411 0.89161 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.11 16 2 C -0.12 -0.89 5.92 30.59 0.18 -0.70 16 3 C -0.05 -0.34 5.77 29.85 0.17 -0.17 16 4 C 0.04 0.60 6.48 41.40 0.27 0.87 16 5 C -0.20 -4.19 10.74 22.41 0.24 -3.95 16 6 C -0.03 -0.87 6.82 42.46 0.29 -0.58 16 7 C 0.60 18.56 7.69 86.75 0.67 19.23 16 8 O -0.57 -20.36 16.36 -3.96 -0.06 -20.42 16 9 N -0.59 -17.22 2.97 -822.48 -2.44 -19.66 16 10 C 0.10 2.75 6.10 86.36 0.53 3.28 16 11 C -0.12 -3.81 5.25 30.67 0.16 -3.65 16 12 C -0.08 -2.62 1.73 -10.77 -0.02 -2.64 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.16 6.45 5.41 86.38 0.47 6.92 16 15 N -0.74 -38.16 5.32 -343.44 -1.83 -39.98 16 16 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 17 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.31 13.06 21.65 0.28 -59.02 16 20 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 C -0.09 -2.41 2.42 -10.71 -0.03 -2.44 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 C -0.14 -3.47 8.82 71.98 0.63 -2.84 16 27 C 0.12 3.16 5.73 86.37 0.49 3.66 16 28 N -0.27 -6.14 8.73 -48.17 -0.42 -6.56 16 29 N -0.37 -5.58 6.83 -47.92 -0.33 -5.91 16 30 H 0.46 3.60 8.96 -219.99 -1.97 1.63 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.13 3.52 4.19 -22.49 -0.09 3.42 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 2.44 7.15 -2.39 -0.02 2.42 16 43 H 0.03 1.18 6.14 -2.39 -0.01 1.17 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.37 20.29 6.85 -92.71 -0.64 19.66 16 46 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.53 6.29 -2.39 -0.02 1.51 16 50 H 0.09 2.45 7.00 -2.39 -0.02 2.43 16 51 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.10 401.32 1.55 -71.55 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -1.75 Total: 31.33 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 6.08 Total: 0.01 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -4.74 Total: -131.14 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.10 1.55 -71.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184911411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.451 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds