Wall clock time and date at job start Tue Mar 31 2020 19:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47480 * 2 1 4 4 C 1.50703 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.35368 * 126.38606 * 84.99912 * 4 3 2 6 6 C 1.41500 * 105.50213 * 180.02562 * 5 4 3 7 7 C 1.47714 * 126.51682 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00167 * 353.66296 * 7 6 5 9 9 N 1.34774 * 119.99582 * 173.66089 * 7 6 5 10 10 C 1.46922 * 120.63669 * 354.86562 * 9 7 6 11 11 C 1.53189 * 108.78128 * 126.36828 * 10 9 7 12 12 C 1.53049 * 109.30925 * 54.63319 * 11 10 9 13 13 H 1.09002 * 109.45690 * 58.66186 * 12 11 10 14 14 C 1.53003 * 109.44528 * 178.62399 * 12 11 10 15 15 N 1.46496 * 109.47230 * 295.03519 * 14 12 11 16 16 C 1.36939 * 120.00193 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00567 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99376 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00346 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47175 * 60.00084 * 20 18 16 22 22 H 1.48502 * 109.47046 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46906 * 299.99977 * 20 18 16 24 24 C 1.53039 * 109.54003 * 298.63877 * 12 11 10 25 25 H 1.09002 * 109.49620 * 181.31589 * 24 12 11 26 26 C 1.53000 * 109.49891 * 301.41293 * 24 12 11 27 27 C 1.46931 * 120.62652 * 174.84376 * 9 7 6 28 28 N 1.31814 * 106.96499 * 0.24358 * 6 5 4 29 29 N 1.28473 * 110.07052 * 359.59200 * 28 6 5 30 30 H 0.96994 * 124.87995 * 180.20777 * 29 28 6 31 31 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46750 * 300.00361 * 1 2 3 33 33 H 1.08998 * 109.46926 * 59.99711 * 1 2 3 34 34 H 1.09003 * 109.46750 * 239.99638 * 2 1 3 35 35 H 1.09006 * 109.46748 * 120.00095 * 2 1 3 36 36 H 1.09003 * 109.47424 * 60.00051 * 3 2 1 37 37 H 1.09005 * 109.46687 * 299.99861 * 3 2 1 38 38 H 1.07998 * 127.24993 * 0.03750 * 5 4 3 39 39 H 1.09001 * 109.59051 * 246.16164 * 10 9 7 40 40 H 1.09007 * 109.58685 * 6.57956 * 10 9 7 41 41 H 1.09009 * 109.49882 * 294.69061 * 11 10 9 42 42 H 1.08994 * 109.50263 * 174.59047 * 11 10 9 43 43 H 1.08997 * 109.47441 * 55.04064 * 14 12 11 44 44 H 1.09006 * 109.46806 * 175.03596 * 14 12 11 45 45 H 0.97002 * 120.00044 * 0.02562 * 15 14 12 46 46 H 0.97003 * 119.99423 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.46923 * 60.00065 * 26 24 12 48 48 H 1.09001 * 109.47102 * 180.02562 * 26 24 12 49 49 H 1.08996 * 109.46784 * 300.00029 * 26 24 12 50 50 H 1.09004 * 109.58457 * 113.84793 * 27 9 7 51 51 H 1.08998 * 109.70344 * 353.48788 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3497 1.3474 -1.0866 6 6 5.6719 1.3906 -0.5846 7 6 6.9160 1.3205 -1.3779 8 8 6.8638 1.0994 -2.5721 9 7 8.1090 1.5018 -0.7776 10 6 8.1840 1.8803 0.6401 11 6 9.0882 0.8821 1.3699 12 6 10.4446 0.8180 0.6638 13 1 10.8962 1.8100 0.6542 14 6 11.3621 -0.1525 1.4104 15 7 11.6448 0.3738 2.7480 16 6 12.4507 -0.3284 3.6039 17 1 12.8783 -1.2701 3.2927 18 6 12.7182 0.1700 4.8715 19 7 12.1968 1.3175 5.2510 20 14 13.8182 -0.7876 6.0388 21 1 15.1615 -0.9545 5.4281 22 1 13.9447 -0.0467 7.3195 23 1 13.2223 -2.1230 6.2968 24 6 10.2506 0.3321 -0.7743 25 1 11.2194 0.2643 -1.2693 26 6 9.5850 -1.0455 -0.7625 27 6 9.3594 1.3241 -1.5284 28 7 5.5824 1.4994 0.7260 29 7 4.3485 1.5362 1.0821 30 1 4.0375 1.6166 1.9973 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9562 -0.8901 38 1 4.0449 1.2578 -2.1188 39 1 8.6007 2.8836 0.7289 40 1 7.1859 1.8569 1.0778 41 1 8.6250 -0.1046 1.3581 42 1 9.2297 1.2058 2.4010 43 1 10.8716 -1.1220 1.4976 44 1 12.2960 -0.2660 0.8597 45 1 11.2611 1.2198 3.0274 46 1 12.3840 1.6660 6.1367 47 1 8.6157 -0.9765 -0.2687 48 1 9.4474 -1.3914 -1.7870 49 1 10.2181 -1.7502 -0.2235 50 1 9.8721 2.2820 -1.6163 51 1 9.1391 0.9349 -2.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184911412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:33 Heat of formation + Delta-G solvation = 41.630496 kcal Electronic energy + Delta-G solvation = -29343.814755 eV Core-core repulsion = 25472.718011 eV Total energy + Delta-G solvation = -3871.096744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.96074 -40.07118 -37.87835 -35.80292 -34.86183 -33.41002 -32.10945 -31.55714 -31.16470 -30.22092 -27.23326 -26.85852 -26.67252 -24.19609 -23.12454 -22.84930 -22.35790 -21.25252 -21.16365 -19.60831 -18.22314 -18.07532 -17.08052 -16.69689 -15.98858 -15.71361 -15.51816 -15.13667 -14.85238 -14.45746 -14.07892 -14.00264 -13.91797 -13.70680 -13.63706 -13.47067 -13.28988 -12.80559 -12.72543 -12.47830 -12.32412 -12.12526 -11.96601 -11.75943 -11.46861 -11.35733 -11.18318 -10.99965 -10.85799 -10.74350 -10.68048 -10.29537 -10.14592 -10.07800 -9.96167 -9.62564 -9.58110 -9.50204 -9.19236 -8.81129 -8.43074 -6.85702 -5.72859 -3.00275 1.41857 1.87827 2.55096 3.11955 3.38809 3.45998 3.50121 3.51241 4.13268 4.27673 4.42831 4.56171 4.62312 4.76480 4.94260 4.96063 5.09144 5.12505 5.15879 5.22186 5.31198 5.37145 5.38766 5.46307 5.51848 5.59363 5.60669 5.73219 5.76709 5.80151 5.81830 5.82393 5.91373 5.99349 6.02193 6.14454 6.20231 6.30201 6.32781 6.42892 6.48957 6.57804 6.63666 6.76898 6.85100 6.94927 7.04560 7.45929 7.72362 7.73309 8.22439 8.46887 9.57638 10.17354 10.52075 11.50171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002548 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.584119 B =10987.186955 C =12334.471167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.051 4.051 4 C 0.019 3.981 5 C -0.176 4.176 6 C -0.002 4.002 7 C 0.600 3.400 8 O -0.543 6.543 9 N -0.589 5.589 10 C 0.073 3.927 11 C -0.120 4.120 12 C -0.090 4.090 13 H 0.070 0.930 14 C 0.159 3.841 15 N -0.731 5.731 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.145 4.145 27 C 0.117 3.883 28 N -0.251 5.251 29 N -0.382 5.382 30 H 0.444 0.556 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.161 0.839 39 H 0.062 0.938 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.832 1.541 -12.570 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.107 4.107 5 C -0.204 4.204 6 C -0.162 4.162 7 C 0.387 3.613 8 O -0.419 6.419 9 N -0.321 5.321 10 C -0.050 4.050 11 C -0.158 4.158 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.212 4.212 19 N -0.584 5.584 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.214 1.214 24 C -0.117 4.117 25 H 0.100 0.900 26 C -0.202 4.202 27 C -0.005 4.005 28 N -0.086 5.086 29 N -0.095 5.095 30 H 0.288 0.712 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.178 0.822 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.072 1.378 -12.220 25.267 hybrid contribution 0.083 -0.212 0.798 0.830 sum -21.989 1.166 -11.422 24.806 Atomic orbital electron populations 1.21779 0.95197 1.02091 1.01983 1.21551 0.96026 0.95432 1.02998 1.20236 0.86286 0.98364 1.04077 1.21431 0.94987 1.06971 0.87355 1.21460 0.90352 1.08869 0.99749 1.21976 0.95195 1.09291 0.89774 1.16986 0.81607 0.76823 0.85917 1.90757 1.86450 1.50555 1.14110 1.47926 1.05000 1.66899 1.12278 1.22791 1.04963 0.97897 0.79356 1.21885 0.94553 0.99419 0.99973 1.21335 0.96085 1.00149 0.93350 0.91167 1.20714 0.94739 0.94624 0.86816 1.42378 1.58879 1.25458 1.10852 1.19195 1.21143 1.02263 0.94101 0.91377 1.24720 1.01214 0.97471 0.97746 1.69653 1.48811 1.19964 1.19986 0.86276 0.80539 0.78975 0.80463 1.21339 1.21745 1.21370 1.21466 0.98607 0.95226 0.96416 0.90049 1.21861 1.01035 0.96282 1.01031 1.21715 0.83618 0.99237 0.95926 1.73301 1.00608 1.19934 1.14782 1.43583 1.03199 1.52778 1.09966 0.71184 0.92393 0.92647 0.92413 0.91114 0.91871 0.90539 0.89014 0.82152 0.91983 0.84959 0.91648 0.89769 0.96152 0.96591 0.78294 0.93575 0.92587 0.93376 0.92002 0.91456 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 3 C -0.05 -0.25 5.77 -27.88 -0.16 -0.41 16 4 C 0.02 0.15 6.48 -82.21 -0.53 -0.38 16 5 C -0.18 -1.92 10.73 -39.36 -0.42 -2.34 16 6 C 0.00 -0.03 6.88 -82.76 -0.57 -0.60 16 7 C 0.60 9.17 7.70 -12.39 -0.10 9.07 16 8 O -0.54 -9.44 16.37 5.30 0.09 -9.35 16 9 N -0.59 -8.45 2.41 -173.92 -0.42 -8.87 16 10 C 0.07 1.03 6.33 -3.71 -0.02 1.01 16 11 C -0.12 -1.94 4.91 -26.61 -0.13 -2.07 16 12 C -0.09 -1.49 1.96 -90.57 -0.18 -1.67 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.16 3.24 5.18 -4.04 -0.02 3.22 16 15 N -0.73 -18.61 5.32 -59.91 -0.32 -18.93 16 16 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.94 -28.35 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.10 -1.37 2.72 -90.50 -0.25 -1.62 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 C -0.14 -2.06 8.38 37.16 0.31 -1.75 16 27 C 0.12 1.59 5.81 -3.71 -0.02 1.57 16 28 N -0.25 -3.01 8.62 33.42 0.29 -2.72 16 29 N -0.38 -3.26 6.83 33.50 0.23 -3.04 16 30 H 0.44 2.33 8.96 -190.44 -1.71 0.62 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.13 1.82 3.74 -111.30 -0.42 1.41 16 41 H 0.06 1.09 6.34 -51.92 -0.33 0.77 16 42 H 0.08 1.54 7.15 -51.93 -0.37 1.17 16 43 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.15 6.84 -40.82 -0.28 9.88 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.24 7.04 -51.93 -0.37 0.88 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -33.82 397.05 -10.51 -44.33 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -9.93 Total: 6.95 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.13 Total: -4.36 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.50 Total: -61.18 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.82 -10.51 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184911412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.961 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds