Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47480 * 2 1 4 4 C 1.50703 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.35368 * 126.38606 * 84.99912 * 4 3 2 6 6 C 1.41500 * 105.50213 * 180.02562 * 5 4 3 7 7 C 1.47714 * 126.51682 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00167 * 353.66296 * 7 6 5 9 9 N 1.34774 * 119.99582 * 173.66089 * 7 6 5 10 10 C 1.46922 * 120.63669 * 354.86562 * 9 7 6 11 11 C 1.53189 * 108.78128 * 126.36828 * 10 9 7 12 12 C 1.53049 * 109.30925 * 54.63319 * 11 10 9 13 13 H 1.09002 * 109.45690 * 58.66186 * 12 11 10 14 14 C 1.53003 * 109.44528 * 178.62399 * 12 11 10 15 15 N 1.46496 * 109.47230 * 295.03519 * 14 12 11 16 16 C 1.36939 * 120.00193 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00567 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99376 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00346 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47175 * 60.00084 * 20 18 16 22 22 H 1.48502 * 109.47046 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46906 * 299.99977 * 20 18 16 24 24 C 1.53039 * 109.54003 * 298.63877 * 12 11 10 25 25 H 1.09002 * 109.49620 * 181.31589 * 24 12 11 26 26 C 1.53000 * 109.49891 * 301.41293 * 24 12 11 27 27 C 1.46931 * 120.62652 * 174.84376 * 9 7 6 28 28 N 1.31814 * 106.96499 * 0.24358 * 6 5 4 29 29 N 1.28473 * 110.07052 * 359.59200 * 28 6 5 30 30 H 0.96994 * 124.87995 * 180.20777 * 29 28 6 31 31 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46750 * 300.00361 * 1 2 3 33 33 H 1.08998 * 109.46926 * 59.99711 * 1 2 3 34 34 H 1.09003 * 109.46750 * 239.99638 * 2 1 3 35 35 H 1.09006 * 109.46748 * 120.00095 * 2 1 3 36 36 H 1.09003 * 109.47424 * 60.00051 * 3 2 1 37 37 H 1.09005 * 109.46687 * 299.99861 * 3 2 1 38 38 H 1.07998 * 127.24993 * 0.03750 * 5 4 3 39 39 H 1.09001 * 109.59051 * 246.16164 * 10 9 7 40 40 H 1.09007 * 109.58685 * 6.57956 * 10 9 7 41 41 H 1.09009 * 109.49882 * 294.69061 * 11 10 9 42 42 H 1.08994 * 109.50263 * 174.59047 * 11 10 9 43 43 H 1.08997 * 109.47441 * 55.04064 * 14 12 11 44 44 H 1.09006 * 109.46806 * 175.03596 * 14 12 11 45 45 H 0.97002 * 120.00044 * 0.02562 * 15 14 12 46 46 H 0.97003 * 119.99423 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.46923 * 60.00065 * 26 24 12 48 48 H 1.09001 * 109.47102 * 180.02562 * 26 24 12 49 49 H 1.08996 * 109.46784 * 300.00029 * 26 24 12 50 50 H 1.09004 * 109.58457 * 113.84793 * 27 9 7 51 51 H 1.08998 * 109.70344 * 353.48788 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.3497 1.3474 -1.0866 6 6 5.6719 1.3906 -0.5846 7 6 6.9160 1.3205 -1.3779 8 8 6.8638 1.0994 -2.5721 9 7 8.1090 1.5018 -0.7776 10 6 8.1840 1.8803 0.6401 11 6 9.0882 0.8821 1.3699 12 6 10.4446 0.8180 0.6638 13 1 10.8962 1.8100 0.6542 14 6 11.3621 -0.1525 1.4104 15 7 11.6448 0.3738 2.7480 16 6 12.4507 -0.3284 3.6039 17 1 12.8783 -1.2701 3.2927 18 6 12.7182 0.1700 4.8715 19 7 12.1968 1.3175 5.2510 20 14 13.8182 -0.7876 6.0388 21 1 15.1615 -0.9545 5.4281 22 1 13.9447 -0.0467 7.3195 23 1 13.2223 -2.1230 6.2968 24 6 10.2506 0.3321 -0.7743 25 1 11.2194 0.2643 -1.2693 26 6 9.5850 -1.0455 -0.7625 27 6 9.3594 1.3241 -1.5284 28 7 5.5824 1.4994 0.7260 29 7 4.3485 1.5362 1.0821 30 1 4.0375 1.6166 1.9973 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9562 -0.8901 38 1 4.0449 1.2578 -2.1188 39 1 8.6007 2.8836 0.7289 40 1 7.1859 1.8569 1.0778 41 1 8.6250 -0.1046 1.3581 42 1 9.2297 1.2058 2.4010 43 1 10.8716 -1.1220 1.4976 44 1 12.2960 -0.2660 0.8597 45 1 11.2611 1.2198 3.0274 46 1 12.3840 1.6660 6.1367 47 1 8.6157 -0.9765 -0.2687 48 1 9.4474 -1.3914 -1.7870 49 1 10.2181 -1.7502 -0.2235 50 1 9.8721 2.2820 -1.6163 51 1 9.1391 0.9349 -2.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184911412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = 21.147315 kcal Electronic energy + Delta-G solvation = -29344.702972 eV Core-core repulsion = 25472.718011 eV Total energy + Delta-G solvation = -3871.984961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.78048 -41.26353 -39.17541 -36.58497 -36.23723 -34.87833 -33.42266 -32.65814 -31.96486 -31.84929 -28.49618 -28.18013 -27.35703 -25.76830 -24.60597 -24.09518 -22.88748 -22.64654 -21.91717 -20.71818 -19.62750 -18.98039 -18.80642 -17.80778 -16.96233 -16.88169 -16.66617 -16.14924 -15.93326 -15.79478 -15.48039 -15.31760 -15.10203 -14.79955 -14.70405 -14.53361 -14.35931 -14.02208 -13.93521 -13.64878 -13.54509 -13.03811 -12.96882 -12.79092 -12.68573 -12.51817 -12.44141 -12.24237 -12.12111 -12.03894 -11.90579 -11.82320 -11.55819 -11.51046 -11.35888 -11.22888 -10.91885 -10.67344 -10.45895 -9.95714 -9.61031 -8.95911 -7.93527 -5.21344 0.45979 1.10322 1.46844 1.49784 1.55854 1.75623 2.14193 2.31157 2.56816 3.26286 3.39411 3.63856 3.70869 3.77115 3.85589 3.93096 4.11397 4.15815 4.19159 4.27080 4.34008 4.45633 4.46684 4.48510 4.57985 4.66580 4.69519 4.74571 4.79284 4.84464 4.86207 4.93678 4.98938 4.99587 5.01397 5.10487 5.19432 5.20255 5.23025 5.25473 5.29939 5.34871 5.42480 5.48517 5.50142 5.55591 5.66724 6.12810 6.29110 6.33909 6.83882 7.11238 7.35427 8.12455 8.36680 9.29763 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002548 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.584119 B =10987.186955 C =12334.471167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.047 4.047 4 C 0.042 3.958 5 C -0.196 4.196 6 C -0.030 4.030 7 C 0.597 3.403 8 O -0.570 6.570 9 N -0.589 5.589 10 C 0.081 3.919 11 C -0.110 4.110 12 C -0.080 4.080 13 H 0.066 0.934 14 C 0.160 3.840 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.972 3.028 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.089 4.089 25 H 0.097 0.903 26 C -0.139 4.139 27 C 0.118 3.882 28 N -0.269 5.269 29 N -0.368 5.368 30 H 0.459 0.541 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.067 0.933 40 H 0.142 0.858 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.081 0.919 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.094 1.409 -12.740 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.085 4.085 4 C -0.085 4.085 5 C -0.224 4.224 6 C -0.189 4.189 7 C 0.385 3.615 8 O -0.449 6.449 9 N -0.320 5.320 10 C -0.042 4.042 11 C -0.148 4.148 12 C -0.099 4.099 13 H 0.085 0.915 14 C 0.034 3.966 15 N -0.385 5.385 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.206 1.206 24 C -0.109 4.109 25 H 0.115 0.885 26 C -0.197 4.197 27 C -0.004 4.004 28 N -0.105 5.105 29 N -0.083 5.083 30 H 0.307 0.693 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.099 0.901 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.331 1.226 -12.402 26.451 hybrid contribution 0.390 -0.206 0.834 0.943 sum -22.941 1.020 -11.569 25.713 Atomic orbital electron populations 1.21760 0.94214 1.02180 1.02678 1.21518 0.96819 0.95272 1.02251 1.20385 0.83589 0.98658 1.05907 1.21824 0.96287 1.04222 0.86157 1.21645 0.89884 1.09997 1.00835 1.21856 0.95233 1.11409 0.90370 1.17282 0.82309 0.76131 0.85807 1.90726 1.86951 1.51959 1.15266 1.47960 1.05229 1.66637 1.12171 1.22721 1.05003 0.97280 0.79205 1.21724 0.94773 0.99484 0.98827 1.21222 0.95267 0.98938 0.94487 0.91511 1.20831 0.95466 0.95306 0.85045 1.42559 1.58473 1.25074 1.12363 1.19583 1.20958 1.02431 0.94732 0.91036 1.25534 1.03100 0.98624 0.99470 1.69809 1.50370 1.21519 1.20156 0.85233 0.78900 0.77718 0.78039 1.20510 1.22020 1.20552 1.21415 0.99584 0.95184 0.94679 0.88527 1.21799 1.00123 0.96226 1.01520 1.21758 0.83307 0.99710 0.95662 1.73110 1.02345 1.20780 1.14310 1.43646 1.02373 1.51261 1.11032 0.69345 0.92672 0.91787 0.91881 0.92263 0.92328 0.88159 0.87750 0.81830 0.91494 0.84207 0.92455 0.92207 0.96391 0.96498 0.79258 0.94015 0.93883 0.92150 0.92608 0.90114 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 71.98 0.71 -0.18 16 2 C -0.12 -0.98 5.92 30.59 0.18 -0.80 16 3 C -0.05 -0.33 5.77 29.85 0.17 -0.15 16 4 C 0.04 0.61 6.48 41.40 0.27 0.88 16 5 C -0.20 -4.11 10.73 22.41 0.24 -3.87 16 6 C -0.03 -0.79 6.88 42.46 0.29 -0.49 16 7 C 0.60 18.25 7.70 86.75 0.67 18.91 16 8 O -0.57 -19.97 16.37 -3.94 -0.06 -20.03 16 9 N -0.59 -16.71 2.41 -822.45 -1.98 -18.69 16 10 C 0.08 2.28 6.33 86.36 0.55 2.83 16 11 C -0.11 -3.59 4.91 30.67 0.15 -3.44 16 12 C -0.08 -2.64 1.96 -10.76 -0.02 -2.66 16 13 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 14 C 0.16 6.54 5.18 86.38 0.45 6.99 16 15 N -0.74 -38.21 5.32 -343.45 -1.83 -40.04 16 16 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 19 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 20 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 C -0.09 -2.42 2.72 -10.72 -0.03 -2.45 16 25 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 26 C -0.14 -3.87 8.38 71.98 0.60 -3.27 16 27 C 0.12 3.08 5.81 86.36 0.50 3.58 16 28 N -0.27 -6.27 8.62 -48.17 -0.42 -6.68 16 29 N -0.37 -5.70 6.83 -47.93 -0.33 -6.03 16 30 H 0.46 3.87 8.96 -220.00 -1.97 1.90 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.14 3.84 3.74 -79.19 -0.30 3.54 16 41 H 0.06 1.95 6.34 -2.38 -0.02 1.94 16 42 H 0.06 2.25 7.15 -2.39 -0.02 2.24 16 43 H 0.02 0.76 6.74 -2.39 -0.02 0.74 16 44 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.37 20.33 6.84 -92.71 -0.63 19.70 16 46 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.04 1.30 5.97 -2.39 -0.01 1.29 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.05 1.60 6.58 -2.39 -0.02 1.58 16 50 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 51 H 0.09 2.42 7.04 -2.39 -0.02 2.40 16 Total: -1.00 -72.76 397.05 1.79 -70.97 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.95 Total: 32.08 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 6.04 Total: -1.10 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -4.27 Total: -130.54 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.03 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.76 1.79 -70.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184911412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.116 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds