Wall clock time and date at job start Tue Mar 31 2020 18:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47315 * 2 1 4 4 N 1.30491 * 125.64764 * 269.95662 * 3 2 1 5 5 C 1.34134 * 109.25850 * 180.02562 * 4 3 2 6 6 C 1.34667 * 108.01506 * 359.73687 * 5 4 3 7 7 N 1.35040 * 125.65094 * 89.99702 * 3 2 1 8 8 C 1.46502 * 126.39840 * 359.96780 * 7 3 2 9 9 H 1.09003 * 109.47342 * 359.97438 * 8 7 3 10 10 C 1.53001 * 109.47098 * 240.00020 * 8 7 3 11 11 C 1.52998 * 109.47279 * 120.00009 * 8 7 3 12 12 C 1.50703 * 109.46966 * 185.00080 * 11 8 7 13 13 O 1.21272 * 120.00386 * 359.97438 * 12 11 8 14 14 N 1.34783 * 119.99810 * 180.27406 * 12 11 8 15 15 C 1.46494 * 120.00109 * 179.72280 * 14 12 11 16 16 C 1.53045 * 109.46028 * 275.02875 * 15 14 12 17 17 C 1.53192 * 109.31082 * 178.59805 * 16 15 14 18 18 N 1.46924 * 108.76608 * 54.65804 * 17 16 15 19 19 C 1.36934 * 120.63258 * 126.35890 * 18 17 16 20 20 H 1.07997 * 119.99953 * 331.85531 * 19 18 17 21 21 C 1.38812 * 120.00061 * 151.85871 * 19 18 17 22 22 N 1.31626 * 120.00076 * 343.07861 * 21 19 18 23 23 Si 1.86801 * 120.00212 * 163.07101 * 21 19 18 24 24 H 1.48500 * 109.46896 * 60.00389 * 23 21 19 25 25 H 1.48500 * 109.47204 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47006 * 300.00304 * 23 21 19 27 27 C 1.46935 * 118.73526 * 306.38092 * 18 17 16 28 28 C 1.53041 * 109.46031 * 154.97487 * 15 14 12 29 29 H 1.09004 * 109.47065 * 60.00398 * 1 2 3 30 30 H 1.09003 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47162 * 300.00015 * 1 2 3 32 32 H 1.08993 * 109.47279 * 239.99443 * 2 1 3 33 33 H 1.09007 * 109.47050 * 120.00135 * 2 1 3 34 34 H 1.07995 * 125.99201 * 180.02562 * 5 4 3 35 35 H 1.08005 * 126.58766 * 180.28082 * 6 5 4 36 36 H 1.09002 * 109.47208 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47175 * 299.99901 * 10 8 7 38 38 H 1.09002 * 109.47358 * 59.99604 * 10 8 7 39 39 H 1.09001 * 109.47083 * 65.00040 * 11 8 7 40 40 H 1.08996 * 109.47145 * 304.99841 * 11 8 7 41 41 H 0.97000 * 119.99440 * 359.72344 * 14 12 11 42 42 H 1.09004 * 109.45765 * 35.00063 * 15 14 12 43 43 H 1.08993 * 109.49580 * 298.56478 * 16 15 14 44 44 H 1.08999 * 109.49529 * 58.66293 * 16 15 14 45 45 H 1.08999 * 109.60102 * 294.86568 * 17 16 15 46 46 H 1.08997 * 109.70148 * 174.50554 * 17 16 15 47 47 H 0.96999 * 119.99882 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.58814 * 293.81664 * 27 18 17 49 49 H 1.09005 * 109.69941 * 173.46100 * 27 18 17 50 50 H 1.09000 * 109.49421 * 301.33767 * 28 15 14 51 51 H 1.08993 * 109.49598 * 61.40193 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2866 2.1375 -1.0604 5 6 2.7159 3.3506 -0.6819 6 6 2.7225 3.3888 0.6642 7 7 2.2947 2.1628 1.0973 8 6 2.1435 1.7374 2.4910 9 1 1.7793 0.7104 2.5200 10 6 1.1422 2.6531 3.1980 11 6 3.4973 1.8191 3.1990 12 6 3.3683 1.2664 4.5950 13 8 2.2988 0.8487 4.9855 14 7 4.4402 1.2418 5.4118 15 6 4.3134 0.7100 6.7709 16 6 3.8098 1.8129 7.7050 17 6 3.6451 1.2441 9.1178 18 7 4.9161 0.6355 9.5335 19 6 5.5127 1.0009 10.7106 20 1 5.3529 1.9904 11.1126 21 6 6.3229 0.0994 11.3872 22 7 6.2623 -1.1838 11.1004 23 14 7.4995 0.7074 12.7046 24 1 6.7307 1.3784 13.7834 25 1 8.2462 -0.4444 13.2712 26 1 8.4573 1.6715 12.1060 27 6 5.5351 -0.3724 8.6617 28 6 5.6784 0.2144 7.2539 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0013 4.1570 -1.3411 35 1 3.0120 4.2253 1.2831 36 1 1.0293 2.3363 4.2348 37 1 1.5059 3.6802 3.1691 38 1 0.1776 2.5950 2.6936 39 1 3.8193 2.8593 3.2483 40 1 4.2331 1.2369 2.6443 41 1 5.2955 1.5761 5.0996 42 1 3.6050 -0.1184 6.7721 43 1 4.5300 2.6308 7.7235 44 1 2.8486 2.1818 7.3472 45 1 2.8603 0.4877 9.1183 46 1 3.3808 2.0453 9.8079 47 1 6.8282 -1.8137 11.5735 48 1 4.9046 -1.2607 8.6250 49 1 6.5189 -0.6384 9.0485 50 1 6.0472 -0.5545 6.5751 51 1 6.3808 1.0475 7.2762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227464812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:36 Heat of formation + Delta-G solvation = 30.168944 kcal Electronic energy + Delta-G solvation = -29149.570363 eV Core-core repulsion = 25277.976609 eV Total energy + Delta-G solvation = -3871.593754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42944 -40.05553 -37.64605 -35.86059 -34.52646 -34.07812 -32.31621 -31.11684 -30.24858 -29.61240 -28.85542 -28.07089 -25.07333 -24.17410 -23.42789 -22.37768 -22.03638 -21.20241 -20.28710 -19.56667 -19.25988 -17.74046 -17.07060 -16.36029 -16.13869 -15.71204 -15.38967 -15.10681 -14.82571 -14.48624 -14.25979 -14.02145 -13.75814 -13.71720 -13.62437 -13.43831 -13.21503 -13.03225 -12.82632 -12.55893 -12.44985 -12.11473 -11.92039 -11.82625 -11.57095 -11.54176 -11.34390 -11.18308 -10.95572 -10.76785 -10.58167 -10.37009 -10.22595 -10.11774 -9.96110 -9.86750 -9.77088 -9.54967 -8.85708 -8.57021 -8.51845 -6.75119 -5.85396 -3.27993 1.82094 2.39488 2.53450 2.95056 3.25607 3.34557 3.40254 3.41047 4.10186 4.15023 4.36102 4.44332 4.46822 4.63909 4.77779 4.88182 4.96088 5.02768 5.11804 5.12357 5.25084 5.30450 5.34020 5.36275 5.42084 5.46495 5.49463 5.52452 5.58081 5.71266 5.76727 5.87311 5.91017 5.98142 6.13673 6.17478 6.23566 6.43465 6.44469 6.49475 6.56642 6.70902 6.78673 6.90671 6.97282 7.23718 7.47200 7.58048 7.73690 7.91655 8.17365 8.38565 9.14630 9.77628 10.34392 11.23574 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.002043 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.033469 B =13702.250958 C =13865.393294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.056 4.056 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.112 0.888 10 C -0.165 4.165 11 C -0.153 4.153 12 C 0.516 3.484 13 O -0.539 6.539 14 N -0.720 5.720 15 C 0.150 3.850 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.397 0.603 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.056 0.944 47 H 0.255 0.745 48 H 0.021 0.979 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 6.120 -20.921 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.189 4.189 7 N -0.131 5.131 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.194 4.194 12 C 0.301 3.699 13 O -0.417 6.417 14 N -0.370 5.370 15 C 0.047 3.953 16 C -0.178 4.178 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.230 0.770 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.110 0.890 50 H 0.073 0.927 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.256 5.370 -21.183 23.027 hybrid contribution 1.345 0.955 1.339 2.124 sum -5.911 6.325 -19.845 21.651 Atomic orbital electron populations 1.21743 0.93854 1.02400 1.02507 1.19990 0.96568 0.87450 1.04028 1.23280 1.03981 0.96655 0.81365 1.70236 1.18338 1.04342 1.28289 1.22255 1.06664 0.96241 0.92764 1.22611 1.09561 0.90014 0.96719 1.45635 1.48718 1.11578 1.07134 1.21174 0.95484 1.01610 0.77351 0.87057 1.22279 0.98090 0.98707 1.03178 1.22017 0.98581 1.04132 0.94679 1.20151 0.84533 0.78859 0.86380 1.90695 1.26898 1.47507 1.76553 1.46362 1.12000 1.63572 1.15019 1.21093 0.99015 0.96476 0.78697 1.22370 0.99935 0.97928 0.97604 1.20869 0.89046 0.96046 0.92009 1.44083 1.19985 1.46726 1.20722 1.19141 1.24812 0.95936 0.98494 0.91679 1.25066 1.01695 0.94803 0.98056 1.70013 1.40425 1.00414 1.43890 0.86354 0.81154 0.77617 0.81544 1.20836 1.21607 1.21044 1.20741 1.00112 0.89677 0.84704 1.22543 0.94678 1.00536 1.00931 0.91928 0.91505 0.92720 0.88729 0.90344 0.81536 0.81222 0.88168 0.92286 0.91999 0.88187 0.88310 0.76972 0.89899 0.92345 0.92775 0.96184 0.92528 0.93494 0.96087 0.88987 0.92744 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.04 -0.34 6.08 -27.89 -0.17 -0.51 16 3 C 0.21 2.23 7.16 -155.43 -1.11 1.11 16 4 N -0.49 -6.07 11.25 -10.82 -0.12 -6.19 16 5 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.50 10.70 -16.56 -0.18 -0.68 16 7 N -0.45 -4.22 2.61 -106.83 -0.28 -4.50 16 8 C 0.15 1.30 2.64 -67.93 -0.18 1.12 16 9 H 0.11 1.04 6.48 -51.93 -0.34 0.71 16 10 C -0.17 -1.49 8.99 37.16 0.33 -1.16 16 11 C -0.15 -1.27 5.19 -27.88 -0.14 -1.41 16 12 C 0.52 6.06 7.51 -10.98 -0.08 5.97 16 13 O -0.54 -8.10 13.63 5.56 0.08 -8.03 16 14 N -0.72 -8.64 5.08 -53.76 -0.27 -8.92 16 15 C 0.15 2.39 2.42 -67.89 -0.16 2.22 16 16 C -0.14 -2.34 5.65 -26.61 -0.15 -2.49 16 17 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 18 N -0.59 -14.33 2.99 -172.32 -0.52 -14.85 16 19 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 20 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -25.55 11.19 55.49 0.62 -24.93 16 23 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 28 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.57 7.08 -51.93 -0.37 0.20 16 34 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.10 1.10 5.95 -51.93 -0.31 0.79 16 37 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 42 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -31.67 403.35 -10.34 -42.01 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.79 Total: 2.96 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.11 Total: 0.25 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.57 Total: -59.39 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.67 -10.34 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227464812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.182 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds