Wall clock time and date at job start Tue Mar 31 2020 18:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47315 * 2 1 4 4 N 1.30491 * 125.64764 * 269.95662 * 3 2 1 5 5 C 1.34134 * 109.25850 * 180.02562 * 4 3 2 6 6 C 1.34667 * 108.01506 * 359.73687 * 5 4 3 7 7 N 1.35040 * 125.65094 * 89.99702 * 3 2 1 8 8 C 1.46502 * 126.39840 * 359.96780 * 7 3 2 9 9 H 1.09003 * 109.47342 * 359.97438 * 8 7 3 10 10 C 1.53001 * 109.47098 * 240.00020 * 8 7 3 11 11 C 1.52998 * 109.47279 * 120.00009 * 8 7 3 12 12 C 1.50703 * 109.46966 * 185.00080 * 11 8 7 13 13 O 1.21272 * 120.00386 * 359.97438 * 12 11 8 14 14 N 1.34783 * 119.99810 * 180.27406 * 12 11 8 15 15 C 1.46494 * 120.00109 * 179.72280 * 14 12 11 16 16 C 1.53045 * 109.46028 * 275.02875 * 15 14 12 17 17 C 1.53192 * 109.31082 * 178.59805 * 16 15 14 18 18 N 1.46924 * 108.76608 * 54.65804 * 17 16 15 19 19 C 1.36934 * 120.63258 * 126.35890 * 18 17 16 20 20 H 1.07997 * 119.99953 * 331.85531 * 19 18 17 21 21 C 1.38812 * 120.00061 * 151.85871 * 19 18 17 22 22 N 1.31626 * 120.00076 * 343.07861 * 21 19 18 23 23 Si 1.86801 * 120.00212 * 163.07101 * 21 19 18 24 24 H 1.48500 * 109.46896 * 60.00389 * 23 21 19 25 25 H 1.48500 * 109.47204 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47006 * 300.00304 * 23 21 19 27 27 C 1.46935 * 118.73526 * 306.38092 * 18 17 16 28 28 C 1.53041 * 109.46031 * 154.97487 * 15 14 12 29 29 H 1.09004 * 109.47065 * 60.00398 * 1 2 3 30 30 H 1.09003 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47162 * 300.00015 * 1 2 3 32 32 H 1.08993 * 109.47279 * 239.99443 * 2 1 3 33 33 H 1.09007 * 109.47050 * 120.00135 * 2 1 3 34 34 H 1.07995 * 125.99201 * 180.02562 * 5 4 3 35 35 H 1.08005 * 126.58766 * 180.28082 * 6 5 4 36 36 H 1.09002 * 109.47208 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47175 * 299.99901 * 10 8 7 38 38 H 1.09002 * 109.47358 * 59.99604 * 10 8 7 39 39 H 1.09001 * 109.47083 * 65.00040 * 11 8 7 40 40 H 1.08996 * 109.47145 * 304.99841 * 11 8 7 41 41 H 0.97000 * 119.99440 * 359.72344 * 14 12 11 42 42 H 1.09004 * 109.45765 * 35.00063 * 15 14 12 43 43 H 1.08993 * 109.49580 * 298.56478 * 16 15 14 44 44 H 1.08999 * 109.49529 * 58.66293 * 16 15 14 45 45 H 1.08999 * 109.60102 * 294.86568 * 17 16 15 46 46 H 1.08997 * 109.70148 * 174.50554 * 17 16 15 47 47 H 0.96999 * 119.99882 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.58814 * 293.81664 * 27 18 17 49 49 H 1.09005 * 109.69941 * 173.46100 * 27 18 17 50 50 H 1.09000 * 109.49421 * 301.33767 * 28 15 14 51 51 H 1.08993 * 109.49598 * 61.40193 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2866 2.1375 -1.0604 5 6 2.7159 3.3506 -0.6819 6 6 2.7225 3.3888 0.6642 7 7 2.2947 2.1628 1.0973 8 6 2.1435 1.7374 2.4910 9 1 1.7793 0.7104 2.5200 10 6 1.1422 2.6531 3.1980 11 6 3.4973 1.8191 3.1990 12 6 3.3683 1.2664 4.5950 13 8 2.2988 0.8487 4.9855 14 7 4.4402 1.2418 5.4118 15 6 4.3134 0.7100 6.7709 16 6 3.8098 1.8129 7.7050 17 6 3.6451 1.2441 9.1178 18 7 4.9161 0.6355 9.5335 19 6 5.5127 1.0009 10.7106 20 1 5.3529 1.9904 11.1126 21 6 6.3229 0.0994 11.3872 22 7 6.2623 -1.1838 11.1004 23 14 7.4995 0.7074 12.7046 24 1 6.7307 1.3784 13.7834 25 1 8.2462 -0.4444 13.2712 26 1 8.4573 1.6715 12.1060 27 6 5.5351 -0.3724 8.6617 28 6 5.6784 0.2144 7.2539 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0013 4.1570 -1.3411 35 1 3.0120 4.2253 1.2831 36 1 1.0293 2.3363 4.2348 37 1 1.5059 3.6802 3.1691 38 1 0.1776 2.5950 2.6936 39 1 3.8193 2.8593 3.2483 40 1 4.2331 1.2369 2.6443 41 1 5.2955 1.5761 5.0996 42 1 3.6050 -0.1184 6.7721 43 1 4.5300 2.6308 7.7235 44 1 2.8486 2.1818 7.3472 45 1 2.8603 0.4877 9.1183 46 1 3.3808 2.0453 9.8079 47 1 6.8282 -1.8137 11.5735 48 1 4.9046 -1.2607 8.6250 49 1 6.5189 -0.6384 9.0485 50 1 6.0472 -0.5545 6.5751 51 1 6.3808 1.0475 7.2762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227464812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:35 Heat of formation + Delta-G solvation = 12.031541 kcal Electronic energy + Delta-G solvation = -29150.356860 eV Core-core repulsion = 25277.976609 eV Total energy + Delta-G solvation = -3872.380251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.14662 -41.09433 -39.10160 -36.75593 -35.90366 -34.70198 -33.97048 -32.13075 -31.68546 -31.13397 -29.53245 -28.98196 -26.80744 -24.86740 -24.35802 -23.90576 -23.41771 -22.06674 -21.33296 -20.83885 -20.18559 -18.87862 -18.42743 -17.40453 -17.22991 -16.81483 -16.49285 -16.22187 -15.80176 -15.60146 -15.36089 -15.21971 -15.08845 -14.85239 -14.59035 -14.40245 -14.27326 -14.21071 -14.02136 -13.90464 -13.24867 -13.19465 -13.01164 -12.88954 -12.58992 -12.55696 -12.53508 -12.50211 -12.24950 -12.19847 -12.04027 -11.96491 -11.87438 -11.55141 -11.35360 -11.04210 -10.77272 -10.56533 -10.55505 -9.99642 -9.27099 -8.71330 -7.88775 -5.34414 1.11826 1.48448 1.49860 1.57035 1.59635 1.66304 2.20456 2.31773 2.51319 3.27174 3.40393 3.49927 3.62930 3.67724 3.76604 3.88318 3.95611 4.04823 4.11971 4.24720 4.33563 4.35609 4.42249 4.46223 4.48757 4.51136 4.65044 4.68355 4.70445 4.77213 4.81911 4.86607 4.87670 4.98630 5.03224 5.05253 5.08148 5.15380 5.19716 5.27673 5.30485 5.44485 5.46988 5.56309 5.63804 5.70943 5.88821 6.26580 6.38096 6.58031 7.13837 7.19133 7.26098 7.83702 8.35908 9.18027 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.002043 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.033469 B =13702.250958 C =13865.393294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.104 0.896 10 C -0.159 4.159 11 C -0.139 4.139 12 C 0.518 3.482 13 O -0.572 6.572 14 N -0.710 5.710 15 C 0.163 3.837 16 C -0.122 4.122 17 C 0.143 3.857 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.178 3.822 28 C -0.129 4.129 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.182 0.818 35 H 0.200 0.800 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.414 0.586 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.007 0.993 46 H 0.056 0.944 47 H 0.251 0.749 48 H -0.006 1.006 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 7.921 -22.098 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.248 5.248 5 C -0.202 4.202 6 C -0.181 4.181 7 N -0.128 5.128 8 C 0.047 3.953 9 H 0.122 0.878 10 C -0.217 4.217 11 C -0.180 4.180 12 C 0.305 3.695 13 O -0.452 6.452 14 N -0.361 5.361 15 C 0.058 3.942 16 C -0.162 4.162 17 C 0.017 3.983 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.051 3.949 28 C -0.169 4.169 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.199 0.801 35 H 0.217 0.783 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.012 0.988 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.478 7.207 -22.402 24.408 hybrid contribution 1.008 0.392 1.689 2.005 sum -5.469 7.599 -20.713 22.731 Atomic orbital electron populations 1.21697 0.93471 1.03167 1.01642 1.20075 0.96855 0.86576 1.04587 1.23641 1.04113 0.97435 0.81472 1.70206 1.19523 1.05561 1.29514 1.22654 1.07325 0.96237 0.93945 1.23061 1.08150 0.90286 0.96635 1.45650 1.48505 1.11706 1.06952 1.21114 0.95846 1.01235 0.77113 0.87803 1.22190 0.98176 0.99427 1.01878 1.21936 0.98514 1.05618 0.91896 1.20682 0.83589 0.77911 0.87359 1.90703 1.28275 1.48816 1.77415 1.46053 1.13198 1.63504 1.13361 1.20624 0.97354 0.95506 0.80681 1.22153 1.00747 0.98081 0.95233 1.20980 0.87330 0.95542 0.94443 1.44345 1.21316 1.47015 1.20633 1.19472 1.24690 0.95985 0.99251 0.91518 1.25818 1.03402 0.94899 1.00418 1.70175 1.41305 1.01442 1.45207 0.85335 0.79082 0.76884 0.79092 1.20315 1.22143 1.20126 1.20563 0.97632 0.89100 0.87581 1.22250 0.95789 1.01175 0.97674 0.92945 0.89943 0.93324 0.88498 0.89399 0.80087 0.78324 0.90003 0.90910 0.92375 0.85623 0.86756 0.74956 0.92194 0.91586 0.91772 0.97512 0.92551 0.94024 0.98801 0.92050 0.90581 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.04 -0.64 6.08 29.85 0.18 -0.46 16 3 C 0.20 3.90 7.16 138.13 0.99 4.89 16 4 N -0.53 -12.51 11.25 -188.14 -2.12 -14.63 16 5 C -0.05 -1.03 11.87 83.52 0.99 -0.04 16 6 C -0.05 -0.73 10.70 83.09 0.89 0.16 16 7 N -0.45 -7.36 2.61 -491.91 -1.28 -8.64 16 8 C 0.15 2.29 2.64 44.99 0.12 2.41 16 9 H 0.10 1.77 6.48 -2.39 -0.02 1.76 16 10 C -0.16 -2.55 8.99 71.98 0.65 -1.90 16 11 C -0.14 -1.79 5.19 29.85 0.15 -1.63 16 12 C 0.52 10.73 7.51 87.66 0.66 11.39 16 13 O -0.57 -16.35 13.63 -3.01 -0.04 -16.39 16 14 N -0.71 -14.86 5.08 -442.40 -2.25 -17.11 16 15 C 0.16 4.92 2.42 45.02 0.11 5.02 16 16 C -0.12 -3.94 5.65 30.67 0.17 -3.77 16 17 C 0.14 5.90 6.52 86.36 0.56 6.47 16 18 N -0.61 -29.81 2.99 -699.09 -2.09 -31.90 16 19 C -0.26 -14.16 9.58 84.03 0.81 -13.36 16 20 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 21 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 22 N -0.94 -54.31 11.19 21.65 0.24 -54.07 16 23 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.18 8.17 5.30 86.36 0.46 8.63 16 28 C -0.13 -4.26 5.55 30.67 0.17 -4.09 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.15 7.08 -2.38 -0.02 1.13 16 34 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.08 1.68 5.95 -2.39 -0.01 1.66 16 37 H 0.07 0.95 7.95 -2.39 -0.02 0.93 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.13 1.06 8.09 -2.39 -0.02 1.04 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.41 6.13 8.60 -92.71 -0.80 5.33 16 42 H 0.06 2.13 7.58 -2.38 -0.02 2.11 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 47 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.06 3.20 6.06 -2.38 -0.01 3.18 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.37 403.35 2.64 -67.73 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.11 Total: 19.13 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 8.04 Total: 10.14 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -7.49 Total: -126.35 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.37 2.64 -67.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227464812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.762 kcal (2) G-P(sol) polarization free energy of solvation -70.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds