Wall clock time and date at job start Tue Mar 31 2020 18:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.47342 * 2 1 4 4 N 1.30496 * 125.64617 * 270.03868 * 3 2 1 5 5 C 1.34131 * 109.25646 * 179.97438 * 4 3 2 6 6 C 1.34676 * 108.01860 * 359.73380 * 5 4 3 7 7 N 1.35034 * 125.65111 * 89.99588 * 3 2 1 8 8 C 1.46503 * 126.39883 * 0.03781 * 7 3 2 9 9 H 1.09000 * 109.47490 * 0.02562 * 8 7 3 10 10 C 1.53009 * 109.47128 * 119.99889 * 8 7 3 11 11 C 1.53003 * 109.47477 * 239.99660 * 8 7 3 12 12 C 1.50694 * 109.47275 * 174.05092 * 11 8 7 13 13 O 1.21279 * 119.99976 * 354.21548 * 12 11 8 14 14 N 1.34779 * 120.00055 * 173.93440 * 12 11 8 15 15 C 1.46505 * 119.99491 * 355.55001 * 14 12 11 16 16 C 1.46502 * 120.00203 * 175.54790 * 14 12 11 17 17 C 1.52997 * 109.47035 * 91.14270 * 16 14 12 18 18 H 1.09002 * 112.73670 * 313.57994 * 17 16 14 19 19 C 1.53494 * 113.46812 * 84.40447 * 17 16 14 20 20 C 1.53499 * 83.34468 * 140.84848 * 19 17 16 21 21 N 1.47064 * 113.46720 * 182.83922 * 17 16 14 22 22 C 1.36939 * 136.05774 * 38.06370 * 21 17 16 23 23 H 1.07998 * 120.00077 * 351.83173 * 22 21 17 24 24 C 1.38809 * 120.00004 * 171.83096 * 22 21 17 25 25 N 1.31624 * 119.99867 * 166.04717 * 24 22 21 26 26 Si 1.86801 * 120.00038 * 346.04796 * 24 22 21 27 27 H 1.48496 * 109.47049 * 86.30401 * 26 24 22 28 28 H 1.48504 * 109.46973 * 206.30707 * 26 24 22 29 29 H 1.48498 * 109.47091 * 326.30230 * 26 24 22 30 30 H 1.09001 * 109.47232 * 300.00505 * 1 2 3 31 31 H 1.08996 * 109.46747 * 60.00091 * 1 2 3 32 32 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47718 * 239.99679 * 2 1 3 34 34 H 1.09007 * 109.47142 * 119.99767 * 2 1 3 35 35 H 1.07997 * 125.99010 * 179.97438 * 5 4 3 36 36 H 1.07995 * 126.59555 * 180.28168 * 6 5 4 37 37 H 1.09000 * 109.47053 * 65.38070 * 10 8 7 38 38 H 1.08996 * 109.46937 * 185.37857 * 10 8 7 39 39 H 1.08996 * 109.47207 * 305.38234 * 10 8 7 40 40 H 1.09002 * 109.46585 * 54.05205 * 11 8 7 41 41 H 1.08996 * 109.47387 * 294.06054 * 11 8 7 42 42 H 1.08996 * 109.47186 * 90.00386 * 15 14 12 43 43 H 1.09004 * 109.46791 * 209.99344 * 15 14 12 44 44 H 1.08989 * 109.47536 * 329.99659 * 15 14 12 45 45 H 1.09000 * 109.46659 * 211.13981 * 16 14 12 46 46 H 1.08998 * 109.46764 * 331.13719 * 16 14 12 47 47 H 1.09009 * 114.20626 * 254.43388 * 19 17 16 48 48 H 1.08996 * 114.20941 * 27.25560 * 19 17 16 49 49 H 1.09001 * 113.46524 * 219.15532 * 20 19 17 50 50 H 1.08999 * 113.51956 * 88.72094 * 20 19 17 51 51 H 0.97001 * 119.99855 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2853 2.1381 -1.0604 5 6 2.7140 3.3514 -0.6820 6 6 2.7216 3.3893 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1448 1.7370 2.4910 9 1 1.7826 0.7094 2.5200 10 6 3.4992 1.8199 3.1981 11 6 1.1432 2.6516 3.1989 12 6 0.8783 2.1275 4.5868 13 8 1.3525 1.0671 4.9353 14 7 0.1191 2.8400 5.4426 15 6 -0.3677 4.1676 5.0591 16 6 -0.2194 2.2870 6.7564 17 6 0.8365 2.7152 7.7774 18 1 1.8546 2.5820 7.4116 19 6 0.5781 4.1038 8.3782 20 6 1.0654 3.4379 9.6725 21 7 0.6174 2.1516 9.1179 22 6 0.1855 0.9556 9.6262 23 1 -0.2143 0.2008 8.9653 24 6 0.2615 0.7134 10.9909 25 7 -0.3923 -0.3008 11.5167 26 14 1.2916 1.8268 12.0811 27 1 0.4779 2.9942 12.5058 28 1 1.7371 1.0715 13.2796 29 1 2.4787 2.2997 11.3246 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.9989 4.1579 -1.3412 36 1 3.0111 4.2256 1.2831 37 1 3.8170 2.8610 3.2535 38 1 3.4086 1.4136 4.2054 39 1 4.2368 1.2441 2.6391 40 1 0.2106 2.6744 2.6350 41 1 1.5536 3.6593 3.2632 42 1 -1.3354 4.0715 4.5668 43 1 -0.4732 4.7871 5.9497 44 1 0.3431 4.6318 4.3757 45 1 -1.1962 2.6586 7.0662 46 1 -0.2469 1.1990 6.6964 47 1 1.2391 4.8842 8.0008 48 1 -0.4719 4.3958 8.3937 49 1 0.5077 3.7473 10.5565 50 1 2.1447 3.4978 9.8128 51 1 -0.3389 -0.4702 12.4703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234402935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:37 Heat of formation + Delta-G solvation = 66.004477 kcal Electronic energy + Delta-G solvation = -29617.049823 eV Core-core repulsion = 25747.010014 eV Total energy + Delta-G solvation = -3870.039809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.14913 -41.25583 -40.01121 -36.94116 -36.34313 -34.71066 -34.42187 -32.07750 -30.69282 -30.24059 -29.51547 -28.73289 -27.20685 -25.32391 -24.92628 -24.47298 -23.61663 -21.96641 -21.16684 -20.39345 -19.91240 -18.91383 -18.50140 -17.59118 -17.28025 -17.18151 -16.84355 -16.35806 -15.97239 -15.74393 -15.49908 -15.12005 -14.97835 -14.82193 -14.62033 -14.36768 -14.21559 -14.10172 -13.91084 -13.85268 -13.63670 -13.38729 -13.20741 -13.17767 -12.96111 -12.65613 -12.60261 -12.52577 -12.49226 -12.18079 -12.02722 -11.96735 -11.94934 -11.78770 -11.17015 -11.02975 -11.00158 -10.78649 -10.57304 -9.64961 -9.25851 -9.17075 -8.14144 -5.42276 1.12355 1.27117 1.34749 1.42057 1.55919 1.62974 2.11400 2.21802 2.40595 3.05328 3.14578 3.36956 3.46413 3.54878 3.64871 3.70749 3.88915 4.02445 4.17287 4.21896 4.26056 4.28563 4.34526 4.39286 4.42608 4.49170 4.49651 4.57914 4.65673 4.66141 4.68628 4.78520 4.79016 4.85617 4.90211 4.94727 4.96615 4.97688 5.03675 5.06602 5.13028 5.22274 5.26237 5.42506 5.45273 5.61664 5.90406 6.15472 6.25435 6.40997 6.52355 7.15304 7.19956 7.43382 8.27388 9.06948 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.002506 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.015868 B =11171.915785 C =11586.095409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.195 3.805 4 N -0.527 5.527 5 C -0.054 4.054 6 C -0.047 4.047 7 N -0.445 5.445 8 C 0.149 3.851 9 H 0.098 0.902 10 C -0.157 4.157 11 C -0.132 4.132 12 C 0.509 3.491 13 O -0.580 6.580 14 N -0.605 5.605 15 C 0.066 3.934 16 C 0.130 3.870 17 C 0.136 3.864 18 H 0.039 0.961 19 C -0.115 4.115 20 C 0.084 3.916 21 N -0.649 5.649 22 C -0.204 4.204 23 H 0.062 0.938 24 C -0.054 4.054 25 N -0.973 5.973 26 Si 0.951 3.049 27 H -0.272 1.272 28 H -0.309 1.309 29 H -0.257 1.257 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.184 0.816 36 H 0.204 0.796 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.039 0.961 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.045 0.955 50 H 0.044 0.956 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 15.166 -23.360 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.067 4.067 4 N -0.246 5.246 5 C -0.201 4.201 6 C -0.179 4.179 7 N -0.128 5.128 8 C 0.045 3.955 9 H 0.116 0.884 10 C -0.215 4.215 11 C -0.172 4.172 12 C 0.297 3.703 13 O -0.460 6.460 14 N -0.337 5.337 15 C -0.075 4.075 16 C 0.005 3.995 17 C 0.029 3.971 18 H 0.056 0.944 19 C -0.153 4.153 20 C -0.041 4.041 21 N -0.377 5.377 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.246 4.246 25 N -0.622 5.622 26 Si 0.780 3.220 27 H -0.198 1.198 28 H -0.238 1.238 29 H -0.182 1.182 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.201 0.799 36 H 0.221 0.779 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.126 0.874 48 H 0.120 0.880 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.423 14.049 -23.624 27.698 hybrid contribution 0.634 -0.244 1.930 2.046 sum 4.057 13.806 -21.694 26.033 Atomic orbital electron populations 1.21683 0.93289 1.03083 1.01773 1.20062 0.96996 0.86847 1.04317 1.23564 1.04308 0.97340 0.81538 1.70211 1.19498 1.05584 1.29347 1.22678 1.07267 0.96182 0.93962 1.23112 1.08028 0.90130 0.96653 1.45632 1.48491 1.11907 1.06738 1.21091 0.97267 0.99739 0.77362 0.88421 1.22133 0.94595 1.03673 1.01069 1.21952 1.01798 1.01898 0.91530 1.20875 0.77777 0.84182 0.87447 1.90755 1.51278 1.25041 1.78887 1.47885 1.51332 1.19643 1.14835 1.22213 1.00862 0.81384 1.03018 1.21388 0.98313 0.98022 0.81741 1.22526 0.96234 0.92232 0.86124 0.94365 1.23459 1.02968 0.94983 0.93898 1.22819 0.97528 0.85374 0.98349 1.46469 1.76141 1.10683 1.04380 1.18512 1.31239 0.91873 0.91554 0.92009 1.25453 1.01880 0.99288 0.97955 1.69897 1.46479 1.33663 1.12172 0.85765 0.80385 0.78026 0.77860 1.19848 1.23799 1.18200 0.93324 0.92505 0.90293 0.88545 0.89970 0.79891 0.77948 0.90194 0.91198 0.92271 0.86740 0.85014 0.91100 0.89363 0.88303 0.89156 0.94202 0.87446 0.87957 0.93674 0.93781 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.90 71.98 0.71 -1.43 16 2 C -0.04 -0.74 6.08 29.85 0.18 -0.56 16 3 C 0.19 4.06 7.16 138.13 0.99 5.05 16 4 N -0.53 -12.58 11.25 -188.13 -2.12 -14.70 16 5 C -0.05 -1.00 11.87 83.52 0.99 -0.01 16 6 C -0.05 -0.68 10.82 83.09 0.90 0.22 16 7 N -0.45 -7.69 2.61 -491.88 -1.28 -8.98 16 8 C 0.15 2.56 2.63 44.99 0.12 2.68 16 9 H 0.10 2.02 6.36 -2.39 -0.02 2.00 16 10 C -0.16 -2.85 8.90 71.99 0.64 -2.21 16 11 C -0.13 -1.85 4.01 29.85 0.12 -1.73 16 12 C 0.51 12.09 7.32 87.65 0.64 12.74 16 13 O -0.58 -19.94 13.86 -3.03 -0.04 -19.98 16 14 N -0.60 -13.31 2.87 -846.77 -2.43 -15.74 16 15 C 0.07 0.72 10.22 127.77 1.31 2.02 16 16 C 0.13 4.15 5.31 86.38 0.46 4.61 16 17 C 0.14 4.81 4.31 41.79 0.18 4.99 16 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 19 C -0.12 -3.09 7.29 30.93 0.23 -2.86 16 20 C 0.08 3.22 5.60 83.18 0.47 3.68 16 21 N -0.65 -30.61 3.49 -713.91 -2.49 -33.11 16 22 C -0.20 -11.97 10.98 84.03 0.92 -11.04 16 23 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 24 C -0.05 -3.24 5.50 84.86 0.47 -2.77 16 25 N -0.97 -63.30 13.97 21.65 0.30 -63.00 16 26 Si 0.95 47.48 25.09 68.60 1.72 49.20 16 27 H -0.27 -12.77 6.82 99.48 0.68 -12.09 16 28 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 29 H -0.26 -12.08 5.86 99.48 0.58 -11.50 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.32 7.08 -2.38 -0.02 1.31 16 35 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.07 1.69 6.36 -2.39 -0.02 1.68 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 1.03 6.90 -2.39 -0.02 1.01 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.84 7.33 -2.38 -0.02 0.82 16 44 H 0.10 0.49 6.31 -2.39 -0.02 0.47 16 45 H 0.09 2.69 7.86 -2.39 -0.02 2.67 16 46 H 0.04 1.65 7.46 -2.39 -0.02 1.63 16 47 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.10 2.42 7.97 -2.39 -0.02 2.40 16 49 H 0.05 1.80 6.12 -2.39 -0.01 1.79 16 50 H 0.04 1.69 7.09 -2.39 -0.02 1.67 16 51 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -82.94 401.50 3.72 -79.22 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.75 Total: 13.70 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 9.32 Total: 13.38 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -8.02 Total: -135.52 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.72 Total: 49.20 kcal Total: -82.94 3.72 -79.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234402935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.225 kcal (2) G-P(sol) polarization free energy of solvation -82.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds