Wall clock time and date at job start Tue Mar 31 2020 19:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 119.99956 * 2 1 4 4 H 1.08001 * 120.00111 * 202.00695 * 3 2 1 5 5 C 1.38810 * 120.00250 * 22.00453 * 3 2 1 6 6 N 1.31626 * 119.99866 * 10.46576 * 5 3 2 7 7 Si 1.86804 * 120.00330 * 190.46738 * 5 3 2 8 8 H 1.48500 * 109.47027 * 89.99947 * 7 5 3 9 9 H 1.48498 * 109.47142 * 209.99723 * 7 5 3 10 10 H 1.48495 * 109.47098 * 330.00156 * 7 5 3 11 11 C 1.46502 * 120.00192 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47125 * 89.99822 * 11 2 1 13 13 H 1.09000 * 109.50288 * 304.93948 * 12 11 2 14 14 C 1.53045 * 109.49649 * 65.00282 * 12 11 2 15 15 C 1.53042 * 109.53972 * 181.34971 * 14 12 11 16 16 C 1.53197 * 109.31018 * 298.63723 * 15 14 12 17 17 N 1.46919 * 108.77765 * 54.63375 * 16 15 14 18 18 C 1.34779 * 120.63099 * 126.37072 * 17 16 15 19 19 O 1.21284 * 119.99961 * 185.58051 * 18 17 16 20 20 C 1.50696 * 119.99907 * 5.58154 * 18 17 16 21 21 C 1.53002 * 109.46937 * 176.36818 * 20 18 17 22 22 C 1.52998 * 109.47175 * 56.36489 * 20 18 17 23 23 C 1.50704 * 109.47215 * 296.36635 * 20 18 17 24 24 C 1.34672 * 126.58571 * 350.40468 * 23 20 18 25 25 N 1.34137 * 108.01626 * 179.70110 * 24 23 20 26 26 C 1.30500 * 109.25655 * 0.26800 * 25 24 23 27 27 N 1.35041 * 108.70104 * 359.97438 * 26 25 24 28 28 H 0.97003 * 126.40426 * 180.02562 * 27 26 25 29 29 C 1.46927 * 118.74046 * 306.64456 * 17 16 15 30 30 H 1.09000 * 109.47083 * 273.69300 * 1 2 3 31 31 H 1.09003 * 109.47182 * 33.69234 * 1 2 3 32 32 H 1.08999 * 109.47252 * 153.68926 * 1 2 3 33 33 H 0.97003 * 120.00342 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46554 * 329.99860 * 11 2 1 35 35 H 1.08999 * 109.47296 * 210.00053 * 11 2 1 36 36 H 1.08991 * 109.46011 * 61.32978 * 14 12 11 37 37 H 1.09004 * 109.44736 * 301.36196 * 14 12 11 38 38 H 1.08996 * 109.49796 * 178.68065 * 15 14 12 39 39 H 1.09006 * 109.52220 * 58.60105 * 15 14 12 40 40 H 1.08997 * 109.58355 * 294.84577 * 16 15 14 41 41 H 1.09002 * 109.69913 * 174.49385 * 16 15 14 42 42 H 1.09000 * 109.46776 * 184.53117 * 21 20 18 43 43 H 1.09001 * 109.46731 * 304.52196 * 21 20 18 44 44 H 1.08992 * 109.47449 * 64.52694 * 21 20 18 45 45 H 1.09000 * 109.46930 * 306.89764 * 22 20 18 46 46 H 1.09000 * 109.47302 * 66.90137 * 22 20 18 47 47 H 1.09001 * 109.47171 * 186.89916 * 22 20 18 48 48 H 1.07997 * 125.99702 * 359.96930 * 24 23 20 49 49 H 1.07995 * 125.65010 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.58667 * 173.14517 * 29 17 16 51 51 H 1.09003 * 109.58688 * 293.57368 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2200 -0.3505 5 6 1.5315 2.3443 0.4504 6 7 0.3702 2.2738 1.0659 7 14 2.3477 4.0032 0.1830 8 1 1.9049 4.5688 -1.1167 9 1 1.9640 4.9264 1.2810 10 1 3.8228 3.8330 0.1719 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5064 -1.7570 -1.9809 14 6 3.3826 -0.7072 -2.1269 15 6 3.6114 -1.1306 -3.5797 16 6 4.2822 -2.5076 -3.6065 17 7 3.4655 -3.4467 -2.8258 18 6 3.0497 -4.6091 -3.3667 19 8 2.2934 -5.3289 -2.7495 20 6 3.5245 -5.0144 -4.7382 21 6 2.9819 -6.4046 -5.0756 22 6 5.0540 -5.0447 -4.7601 23 6 3.0272 -4.0204 -5.7560 24 6 2.1321 -3.0364 -5.5462 25 7 1.9664 -2.3732 -6.7003 26 6 2.7205 -2.9125 -7.6187 27 7 3.3968 -3.9457 -7.0719 28 1 4.0293 -4.5244 -7.5258 29 6 3.1055 -3.0920 -1.4461 30 1 -0.3633 0.0662 1.0255 31 1 -0.3634 0.8551 -0.5701 32 1 -0.3634 -0.9212 -0.4555 33 1 -0.0620 3.0833 1.3804 34 1 1.6084 -2.0281 0.5148 35 1 3.1500 -1.1382 0.5143 36 1 4.3374 -0.6799 -1.6020 37 1 2.9275 0.2830 -2.1047 38 1 4.2549 -0.4027 -4.0738 39 1 2.6545 -1.1819 -4.0992 40 1 5.2778 -2.4376 -3.1684 41 1 4.3596 -2.8587 -4.6355 42 1 3.3900 -6.7316 -6.0320 43 1 3.2748 -7.1079 -4.2961 44 1 1.8946 -6.3647 -5.1391 45 1 5.4415 -4.0910 -4.4017 46 1 5.4108 -5.8475 -4.1149 47 1 5.3995 -5.2172 -5.7794 48 1 1.6379 -2.8166 -4.6114 49 1 2.7920 -2.5866 -8.6458 50 1 2.4047 -3.8273 -1.0508 51 1 4.0032 -3.0706 -0.8282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265399148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:50 Heat of formation + Delta-G solvation = 33.779640 kcal Electronic energy + Delta-G solvation = -31132.712123 eV Core-core repulsion = 27261.274941 eV Total energy + Delta-G solvation = -3871.437182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.42438 -41.36973 -39.12468 -37.23244 -36.48170 -34.28108 -33.29949 -32.99701 -31.92954 -29.88603 -28.44536 -28.01208 -27.24379 -26.75349 -24.35237 -23.65325 -23.01394 -22.23103 -21.94410 -20.70598 -20.24368 -19.11095 -18.55656 -17.56233 -17.11551 -16.79108 -16.24630 -16.10472 -15.86167 -15.43048 -15.35874 -15.14092 -14.94341 -14.91510 -14.76999 -14.40194 -14.19303 -13.93134 -13.82899 -13.67840 -13.31823 -13.19975 -12.94624 -12.87402 -12.75400 -12.64665 -12.53430 -12.33517 -12.28283 -12.12904 -11.88966 -11.83136 -11.63870 -11.38979 -11.16274 -10.96963 -10.93590 -10.73892 -10.57411 -9.62487 -9.32748 -8.72430 -7.77226 -5.24505 1.01533 1.41605 1.47300 1.49194 1.57019 1.94696 2.19156 2.27731 2.54166 3.28249 3.36809 3.55260 3.67814 3.81220 3.85852 3.94177 3.99720 4.01774 4.12124 4.27855 4.41990 4.45904 4.51226 4.55246 4.56328 4.64127 4.71705 4.75537 4.78062 4.79210 4.83748 4.85287 4.88340 4.94306 4.99286 5.10825 5.17071 5.22781 5.25314 5.25835 5.37757 5.53830 5.60143 5.62257 5.66569 5.67382 5.73833 6.36925 6.40181 6.58706 7.08652 7.13401 7.19457 7.91491 8.37487 9.27410 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016860 B = 0.003364 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.316325 B = 8321.055576 C = 8984.062787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.615 5.615 3 C -0.243 4.243 4 H 0.082 0.918 5 C -0.062 4.062 6 N -0.947 5.947 7 Si 0.965 3.035 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.263 1.263 11 C 0.157 3.843 12 C -0.102 4.102 13 H 0.036 0.964 14 C -0.103 4.103 15 C -0.129 4.129 16 C 0.105 3.895 17 N -0.597 5.597 18 C 0.523 3.477 19 O -0.577 6.577 20 C 0.003 3.997 21 C -0.123 4.123 22 C -0.154 4.154 23 C -0.007 4.007 24 C -0.033 4.033 25 N -0.537 5.537 26 C 0.205 3.795 27 N -0.542 5.542 28 H 0.439 0.561 29 C 0.123 3.877 30 H 0.001 0.999 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.244 0.756 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.131 0.869 49 H 0.251 0.749 50 H 0.073 0.927 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 -17.535 -20.216 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.338 5.338 3 C -0.374 4.374 4 H 0.100 0.900 5 C -0.256 4.256 6 N -0.595 5.595 7 Si 0.794 3.206 8 H -0.218 1.218 9 H -0.226 1.226 10 H -0.187 1.187 11 C 0.030 3.970 12 C -0.124 4.124 13 H 0.055 0.945 14 C -0.141 4.141 15 C -0.167 4.167 16 C -0.017 4.017 17 N -0.328 5.328 18 C 0.311 3.689 19 O -0.457 6.457 20 C -0.002 4.002 21 C -0.180 4.180 22 C -0.211 4.211 23 C -0.124 4.124 24 C -0.181 4.181 25 N -0.256 5.256 26 C -0.079 4.079 27 N -0.147 5.147 28 H 0.282 0.718 29 C 0.000 4.000 30 H 0.020 0.980 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.148 0.852 49 H 0.266 0.734 50 H 0.091 0.909 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.030 -17.092 -19.907 29.754 hybrid contribution 0.022 0.554 0.461 0.721 sum 14.052 -16.538 -19.446 29.140 Atomic orbital electron populations 1.20457 0.83455 0.95275 0.97129 1.44073 1.01692 1.01872 1.86172 1.19605 0.97839 0.86089 1.33818 0.90031 1.25810 0.98468 1.01863 0.99441 1.70261 1.18807 1.27063 1.43332 0.85280 0.78718 0.80115 0.76498 1.21768 1.22568 1.18732 1.20826 0.95778 0.86704 0.93648 1.21821 0.97738 0.94272 0.98531 0.94535 1.21462 0.98739 0.98912 0.94959 1.21916 1.01176 0.96857 0.96719 1.22264 0.93935 0.88170 0.97297 1.48102 1.52032 1.18471 1.14174 1.20720 0.79482 0.80583 0.88116 1.90679 1.36558 1.53981 1.64461 1.19192 0.99007 0.94501 0.87454 1.21692 1.00737 0.92648 1.02969 1.22271 0.89157 1.04596 1.05109 1.20384 1.03739 1.01550 0.86708 1.21838 1.01998 0.97114 0.97162 1.70285 1.24713 1.29947 1.00669 1.25781 0.93036 0.88015 1.01113 1.42984 1.36295 1.27734 1.07725 0.71846 1.21452 1.00426 0.95589 0.82495 0.98035 0.96368 0.96636 0.94639 0.94236 0.92802 0.91763 0.92852 0.90132 0.93050 0.89394 0.87424 0.88926 0.91448 0.93939 0.90349 0.90484 0.88644 0.85183 0.73355 0.90898 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.71 8.96 127.77 1.14 10.85 16 2 N -0.62 -31.60 2.80 -726.94 -2.04 -33.64 16 3 C -0.24 -13.27 8.18 84.03 0.69 -12.58 16 4 H 0.08 4.20 6.71 -2.91 -0.02 4.18 16 5 C -0.06 -3.54 5.15 84.86 0.44 -3.10 16 6 N -0.95 -57.91 10.52 21.65 0.23 -57.68 16 7 Si 0.96 45.83 29.57 68.60 2.03 47.86 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 9 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 C 0.16 6.47 5.16 86.38 0.45 6.92 16 12 C -0.10 -3.59 2.53 -10.86 -0.03 -3.62 16 13 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 14 C -0.10 -3.43 4.43 30.62 0.14 -3.30 16 15 C -0.13 -3.47 5.85 30.67 0.18 -3.29 16 16 C 0.10 2.18 3.62 86.37 0.31 2.49 16 17 N -0.60 -15.23 2.66 -819.74 -2.18 -17.41 16 18 C 0.52 13.91 5.49 87.66 0.48 14.39 16 19 O -0.58 -20.04 15.38 -3.04 -0.05 -20.09 16 20 C 0.00 0.05 0.73 -53.67 -0.04 0.01 16 21 C -0.12 -1.98 7.76 71.98 0.56 -1.42 16 22 C -0.15 -1.53 8.11 71.98 0.58 -0.95 16 23 C -0.01 -0.12 3.83 40.95 0.16 0.04 16 24 C -0.03 -0.88 7.87 83.52 0.66 -0.22 16 25 N -0.54 -13.54 11.25 -200.31 -2.25 -15.79 16 26 C 0.20 2.79 13.04 180.26 2.35 5.14 16 27 N -0.54 -5.34 6.02 -186.49 -1.12 -6.46 16 28 H 0.44 0.54 8.70 -92.71 -0.81 -0.26 16 29 C 0.12 3.63 5.70 86.22 0.49 4.12 16 30 H 0.00 0.08 7.46 -2.39 -0.02 0.06 16 31 H 0.02 1.03 7.10 -2.39 -0.02 1.01 16 32 H 0.02 0.73 8.04 -2.39 -0.02 0.71 16 33 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.04 1.59 8.07 -2.39 -0.02 1.57 16 35 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.21 5.96 -2.38 -0.01 2.19 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.64 5.77 -2.38 -0.01 1.63 16 40 H 0.09 1.47 7.96 -2.39 -0.02 1.45 16 41 H 0.11 1.90 3.26 -2.39 -0.01 1.89 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.82 4.74 -2.39 -0.01 0.81 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.33 7.77 -2.39 -0.02 0.31 16 48 H 0.13 4.36 6.47 -2.91 -0.02 4.34 16 49 H 0.25 0.99 8.06 -2.91 -0.02 0.97 16 50 H 0.07 2.39 7.00 -2.39 -0.02 2.38 16 51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.45 380.36 3.31 -75.14 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.13 Total: 12.60 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 8.56 Total: 15.48 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -7.36 Total: -130.99 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -78.45 3.31 -75.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265399148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.918 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds