Wall clock time and date at job start Tue Mar 31 2020 19:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46697 * 2 1 4 4 C 1.50695 * 109.47330 * 120.00295 * 2 1 3 5 5 N 1.30445 * 125.98823 * 299.97424 * 4 2 1 6 6 N 1.39936 * 108.90155 * 180.02562 * 5 4 2 7 7 C 1.46494 * 125.75892 * 179.97438 * 6 5 4 8 8 C 1.34260 * 108.49026 * 0.22634 * 6 5 4 9 9 C 1.38052 * 107.41565 * 359.64280 * 8 6 5 10 10 C 1.47428 * 126.41437 * 180.10123 * 9 8 6 11 11 O 1.21602 * 119.99815 * 129.55928 * 10 9 8 12 12 N 1.34777 * 119.99972 * 309.55988 * 10 9 8 13 13 C 1.46924 * 120.62912 * 4.04880 * 12 10 9 14 14 C 1.52764 * 109.00938 * 233.58194 * 13 12 10 15 15 C 1.53041 * 109.38387 * 305.59626 * 14 13 12 16 16 C 1.53039 * 109.54039 * 61.23732 * 15 14 13 17 17 H 1.08997 * 109.52310 * 58.60013 * 16 15 14 18 18 C 1.53000 * 109.49846 * 178.68540 * 16 15 14 19 19 N 1.46493 * 109.47407 * 184.83671 * 18 16 15 20 20 C 1.36935 * 120.00391 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00325 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46936 * 60.00441 * 24 22 20 26 26 H 1.48500 * 109.46993 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47500 * 300.00113 * 24 22 20 28 28 C 1.46928 * 120.62736 * 184.33096 * 12 10 9 29 29 H 1.08999 * 109.47480 * 299.99495 * 1 2 3 30 30 H 1.09003 * 109.47597 * 60.00004 * 1 2 3 31 31 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47000 * 240.00460 * 2 1 3 33 33 H 1.09002 * 109.46847 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47377 * 299.99666 * 3 2 1 35 35 H 1.08994 * 109.46996 * 60.00747 * 3 2 1 36 36 H 1.08998 * 109.47700 * 90.02192 * 7 6 5 37 37 H 1.09000 * 109.47099 * 330.02004 * 7 6 5 38 38 H 1.08998 * 109.47230 * 210.02304 * 7 6 5 39 39 H 1.07998 * 126.29673 * 179.75146 * 8 6 5 40 40 H 1.09000 * 109.58809 * 353.42462 * 13 12 10 41 41 H 1.09007 * 109.57869 * 113.84778 * 13 12 10 42 42 H 1.08991 * 109.56618 * 185.55721 * 14 13 12 43 43 H 1.09001 * 109.37979 * 65.51770 * 14 13 12 44 44 H 1.09007 * 109.45789 * 301.21481 * 15 14 13 45 45 H 1.09000 * 109.44936 * 181.25259 * 15 14 13 46 46 H 1.09002 * 109.46780 * 304.83782 * 18 16 15 47 47 H 1.08999 * 109.47277 * 64.83315 * 18 16 15 48 48 H 0.97005 * 120.00051 * 359.97438 * 19 18 16 49 49 H 0.97002 * 119.99946 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.58302 * 246.15449 * 28 12 10 51 51 H 1.08998 * 109.58689 * 6.44008 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7907 -0.3679 2.4656 6 7 2.4308 -1.2724 3.3203 7 6 2.4038 -1.2323 4.7845 8 6 3.0784 -2.1798 2.5722 9 6 2.8481 -1.8639 1.2482 10 6 3.3623 -2.5905 0.0729 11 8 2.6019 -2.9271 -0.8143 12 7 4.6751 -2.8815 -0.0182 13 6 5.5913 -2.5604 1.0846 14 6 6.7546 -1.7334 0.5403 15 6 7.4089 -2.4815 -0.6235 16 6 6.3866 -2.6774 -1.7454 17 1 6.0165 -1.7065 -2.0746 18 6 7.0506 -3.3964 -2.9215 19 7 6.1063 -3.4811 -4.0382 20 6 6.4812 -4.0870 -5.2076 21 1 7.4733 -4.5022 -5.3067 22 6 5.5866 -4.1668 -6.2659 23 7 4.3780 -3.6595 -6.1456 24 14 6.0983 -4.9927 -7.8613 25 1 6.4623 -6.4070 -7.5919 26 1 4.9703 -4.9476 -8.8260 27 1 7.2689 -4.2808 -8.4340 28 6 5.2182 -3.5204 -1.2247 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5582 -1.8159 5.1485 37 1 2.3030 -0.1995 5.1179 38 1 3.3303 -1.6518 5.1765 39 1 3.6692 -3.0062 2.9387 40 1 5.0611 -1.9868 1.8449 41 1 5.9750 -3.4826 1.5211 42 1 7.4895 -1.5736 1.3291 43 1 6.3815 -0.7709 0.1902 44 1 7.7602 -3.4540 -0.2783 45 1 8.2530 -1.9026 -0.9984 46 1 7.9347 -2.8409 -3.2345 47 1 7.3423 -4.4010 -2.6153 48 1 5.2153 -3.1079 -3.9493 49 1 3.7527 -3.7156 -6.8851 50 1 5.5709 -4.5223 -0.9803 51 1 4.4413 -3.5821 -1.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265634520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:31 Heat of formation + Delta-G solvation = 42.136138 kcal Electronic energy + Delta-G solvation = -29968.067213 eV Core-core repulsion = 26096.992396 eV Total energy + Delta-G solvation = -3871.074817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68072 -39.62394 -37.38559 -35.87120 -34.84814 -32.98044 -32.50900 -31.65040 -30.61542 -29.48615 -27.32083 -27.11788 -25.47397 -25.37153 -23.12402 -22.73792 -22.23881 -21.22777 -20.18357 -19.46265 -18.75009 -17.33151 -16.90590 -16.45670 -15.84822 -15.57734 -15.02916 -14.76822 -14.66842 -14.59627 -14.32583 -14.05789 -13.58980 -13.54483 -13.49370 -13.24300 -13.09297 -12.84330 -12.68262 -12.64706 -12.38090 -12.26183 -12.13125 -11.57260 -11.41573 -11.18440 -11.07033 -11.00506 -10.96811 -10.77402 -10.66253 -10.57283 -10.35126 -10.23207 -9.95466 -9.63277 -9.54622 -9.45803 -8.79684 -8.70314 -8.36220 -6.82918 -5.65663 -2.95374 1.45233 2.13611 2.22075 3.03293 3.36320 3.50357 3.54191 3.56006 4.13291 4.39096 4.58615 4.64884 4.73654 4.77989 4.84514 4.90826 4.95920 4.99358 5.09774 5.18329 5.26693 5.34213 5.38403 5.40997 5.50660 5.53895 5.66894 5.67375 5.71986 5.84252 5.86468 5.88897 5.91905 6.01598 6.03912 6.16078 6.19220 6.22826 6.26695 6.27022 6.43479 6.45897 6.62024 6.62544 6.76857 6.84229 6.94714 7.45496 7.65005 7.77585 8.46010 8.52089 9.62897 10.21274 10.55592 11.56546 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003069 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.862199 B = 9121.129340 C =10315.462777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 C -0.140 4.140 4 C 0.135 3.865 5 N -0.294 5.294 6 N -0.367 5.367 7 C 0.100 3.900 8 C 0.086 3.914 9 C -0.270 4.270 10 C 0.589 3.411 11 O -0.524 6.524 12 N -0.606 5.606 13 C 0.103 3.897 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.107 4.107 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.122 3.878 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.181 0.819 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.064 0.936 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 7.312 26.099 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C -0.198 4.198 4 C -0.033 4.033 5 N -0.115 5.115 6 N -0.145 5.145 7 C -0.042 4.042 8 C -0.064 4.064 9 C -0.285 4.285 10 C 0.376 3.624 11 O -0.400 6.400 12 N -0.340 5.340 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.127 4.127 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.377 5.377 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.001 3.999 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.198 0.802 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.083 0.917 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.763 7.867 26.445 27.647 hybrid contribution 0.587 -1.063 -1.144 1.668 sum -1.176 6.804 25.301 26.226 Atomic orbital electron populations 1.21757 0.93505 1.02359 1.01977 1.19750 0.96498 0.95480 0.92511 1.21803 1.01121 0.94676 1.02222 1.22309 0.94202 0.93326 0.93422 1.77106 1.20029 1.14325 1.00030 1.48256 1.38315 1.21075 1.06880 1.21928 1.03554 1.04931 0.73742 1.22957 0.97350 0.95448 0.90624 1.20267 1.11729 1.03620 0.92888 1.17357 0.81644 0.78253 0.85152 1.90844 1.56099 1.52435 1.40625 1.48051 1.06821 1.60875 1.18224 1.21761 0.91293 0.99328 0.89637 1.21823 0.97202 0.99464 0.98630 1.21517 0.98043 1.00391 0.95012 1.21687 0.95267 1.00221 0.95485 0.90785 1.20624 0.92806 0.96372 0.86903 1.42406 1.13966 1.70172 1.11201 1.19151 0.97808 1.29655 0.90746 0.91338 1.24752 0.96122 1.01635 0.98381 1.69665 1.05565 1.50417 1.32068 0.86290 0.77099 0.79245 0.83656 1.21338 1.21718 1.21369 1.21714 0.97167 0.94714 0.86320 0.92449 0.91816 0.92317 0.88326 0.92689 0.91736 0.92291 0.90465 0.88991 0.89241 0.80166 0.89958 0.91652 0.91153 0.91578 0.91822 0.91608 0.96151 0.96313 0.78046 0.93441 0.91722 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.17 37.16 0.34 -1.33 16 2 C -0.02 -0.29 3.31 -91.77 -0.30 -0.60 16 3 C -0.14 -1.60 9.18 37.16 0.34 -1.25 16 4 C 0.13 1.85 5.77 -82.02 -0.47 1.38 16 5 N -0.29 -3.70 12.50 33.89 0.42 -3.28 16 6 N -0.37 -3.49 3.98 -67.60 -0.27 -3.76 16 7 C 0.10 0.45 11.44 59.84 0.68 1.14 16 8 C 0.09 0.85 9.14 -16.56 -0.15 0.70 16 9 C -0.27 -3.69 5.13 -105.06 -0.54 -4.23 16 10 C 0.59 9.77 7.13 -12.52 -0.09 9.68 16 11 O -0.52 -11.08 15.84 5.28 0.08 -11.00 16 12 N -0.61 -8.84 2.98 -174.29 -0.52 -9.36 16 13 C 0.10 1.06 5.87 -3.93 -0.02 1.04 16 14 C -0.13 -1.36 6.07 -26.83 -0.16 -1.52 16 15 C -0.11 -1.37 5.17 -26.69 -0.14 -1.51 16 16 C -0.11 -1.77 2.38 -90.50 -0.22 -1.98 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.16 3.27 5.65 -4.05 -0.02 3.25 16 19 N -0.73 -19.13 5.38 -59.91 -0.32 -19.45 16 20 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 24 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.12 2.10 5.51 -3.71 -0.02 2.08 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.56 7.00 -51.93 -0.36 1.20 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.18 1.14 7.64 -52.49 -0.40 0.74 16 40 H 0.08 0.74 4.61 -51.93 -0.24 0.50 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.39 10.76 6.89 -40.82 -0.28 10.48 16 49 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.10 2.24 6.23 -51.93 -0.32 1.91 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -36.32 406.08 -8.57 -44.89 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.76 Total: 7.07 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.02 Total: -0.76 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.04 Total: -64.31 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.32 -8.57 -44.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.024 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds