Wall clock time and date at job start Tue Mar 31 2020 19:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46697 * 2 1 4 4 C 1.50695 * 109.47330 * 120.00295 * 2 1 3 5 5 N 1.30445 * 125.98823 * 299.97424 * 4 2 1 6 6 N 1.39936 * 108.90155 * 180.02562 * 5 4 2 7 7 C 1.46494 * 125.75892 * 179.97438 * 6 5 4 8 8 C 1.34260 * 108.49026 * 0.22634 * 6 5 4 9 9 C 1.38052 * 107.41565 * 359.64280 * 8 6 5 10 10 C 1.47428 * 126.41437 * 180.10123 * 9 8 6 11 11 O 1.21602 * 119.99815 * 129.55928 * 10 9 8 12 12 N 1.34777 * 119.99972 * 309.55988 * 10 9 8 13 13 C 1.46924 * 120.62912 * 4.04880 * 12 10 9 14 14 C 1.52764 * 109.00938 * 233.58194 * 13 12 10 15 15 C 1.53041 * 109.38387 * 305.59626 * 14 13 12 16 16 C 1.53039 * 109.54039 * 61.23732 * 15 14 13 17 17 H 1.08997 * 109.52310 * 58.60013 * 16 15 14 18 18 C 1.53000 * 109.49846 * 178.68540 * 16 15 14 19 19 N 1.46493 * 109.47407 * 184.83671 * 18 16 15 20 20 C 1.36935 * 120.00391 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00325 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46936 * 60.00441 * 24 22 20 26 26 H 1.48500 * 109.46993 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47500 * 300.00113 * 24 22 20 28 28 C 1.46928 * 120.62736 * 184.33096 * 12 10 9 29 29 H 1.08999 * 109.47480 * 299.99495 * 1 2 3 30 30 H 1.09003 * 109.47597 * 60.00004 * 1 2 3 31 31 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47000 * 240.00460 * 2 1 3 33 33 H 1.09002 * 109.46847 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47377 * 299.99666 * 3 2 1 35 35 H 1.08994 * 109.46996 * 60.00747 * 3 2 1 36 36 H 1.08998 * 109.47700 * 90.02192 * 7 6 5 37 37 H 1.09000 * 109.47099 * 330.02004 * 7 6 5 38 38 H 1.08998 * 109.47230 * 210.02304 * 7 6 5 39 39 H 1.07998 * 126.29673 * 179.75146 * 8 6 5 40 40 H 1.09000 * 109.58809 * 353.42462 * 13 12 10 41 41 H 1.09007 * 109.57869 * 113.84778 * 13 12 10 42 42 H 1.08991 * 109.56618 * 185.55721 * 14 13 12 43 43 H 1.09001 * 109.37979 * 65.51770 * 14 13 12 44 44 H 1.09007 * 109.45789 * 301.21481 * 15 14 13 45 45 H 1.09000 * 109.44936 * 181.25259 * 15 14 13 46 46 H 1.09002 * 109.46780 * 304.83782 * 18 16 15 47 47 H 1.08999 * 109.47277 * 64.83315 * 18 16 15 48 48 H 0.97005 * 120.00051 * 359.97438 * 19 18 16 49 49 H 0.97002 * 119.99946 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.58302 * 246.15449 * 28 12 10 51 51 H 1.08998 * 109.58689 * 6.44008 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7907 -0.3679 2.4656 6 7 2.4308 -1.2724 3.3203 7 6 2.4038 -1.2323 4.7845 8 6 3.0784 -2.1798 2.5722 9 6 2.8481 -1.8639 1.2482 10 6 3.3623 -2.5905 0.0729 11 8 2.6019 -2.9271 -0.8143 12 7 4.6751 -2.8815 -0.0182 13 6 5.5913 -2.5604 1.0846 14 6 6.7546 -1.7334 0.5403 15 6 7.4089 -2.4815 -0.6235 16 6 6.3866 -2.6774 -1.7454 17 1 6.0165 -1.7065 -2.0746 18 6 7.0506 -3.3964 -2.9215 19 7 6.1063 -3.4811 -4.0382 20 6 6.4812 -4.0870 -5.2076 21 1 7.4733 -4.5022 -5.3067 22 6 5.5866 -4.1668 -6.2659 23 7 4.3780 -3.6595 -6.1456 24 14 6.0983 -4.9927 -7.8613 25 1 6.4623 -6.4070 -7.5919 26 1 4.9703 -4.9476 -8.8260 27 1 7.2689 -4.2808 -8.4340 28 6 5.2182 -3.5204 -1.2247 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5582 -1.8159 5.1485 37 1 2.3030 -0.1995 5.1179 38 1 3.3303 -1.6518 5.1765 39 1 3.6692 -3.0062 2.9387 40 1 5.0611 -1.9868 1.8449 41 1 5.9750 -3.4826 1.5211 42 1 7.4895 -1.5736 1.3291 43 1 6.3815 -0.7709 0.1902 44 1 7.7602 -3.4540 -0.2783 45 1 8.2530 -1.9026 -0.9984 46 1 7.9347 -2.8409 -3.2345 47 1 7.3423 -4.4010 -2.6153 48 1 5.2153 -3.1079 -3.9493 49 1 3.7527 -3.7156 -6.8851 50 1 5.5709 -4.5223 -0.9803 51 1 4.4413 -3.5821 -1.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265634520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:29 Heat of formation + Delta-G solvation = 17.325915 kcal Electronic energy + Delta-G solvation = -29969.143065 eV Core-core repulsion = 26096.992396 eV Total energy + Delta-G solvation = -3872.150669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58308 -40.80132 -38.70353 -36.85537 -36.53732 -34.50096 -33.36449 -33.04681 -31.88162 -30.93220 -28.09391 -28.05122 -27.17142 -26.45395 -24.85973 -23.74546 -23.15102 -22.52890 -21.41082 -20.55044 -19.73222 -19.14577 -18.21172 -17.51384 -16.79363 -16.70498 -16.54468 -16.05100 -15.83962 -15.52829 -15.50284 -15.37753 -15.20984 -14.95235 -14.37867 -14.36706 -14.08331 -14.02251 -13.80603 -13.70930 -13.45958 -13.33304 -13.02837 -13.01338 -12.83705 -12.66372 -12.44070 -12.20444 -12.17531 -12.06438 -12.00949 -11.91704 -11.81499 -11.67185 -11.48754 -11.29764 -10.94575 -10.87905 -10.29973 -9.71691 -9.47211 -8.99643 -7.92648 -5.23360 0.63234 1.16577 1.45545 1.46459 1.50198 1.56431 1.86718 2.24521 2.56722 3.31421 3.39832 3.61622 3.69552 3.86852 3.92892 3.93724 3.97955 4.10778 4.14120 4.17915 4.28746 4.36633 4.41542 4.46797 4.49483 4.54422 4.62034 4.63742 4.73476 4.75747 4.79703 4.84413 4.88033 4.90829 4.92055 4.94429 5.04931 5.06168 5.14659 5.21343 5.25504 5.27441 5.36644 5.47312 5.48465 5.52852 5.59643 5.95075 6.27456 6.46225 6.59754 7.24072 7.32821 8.09931 8.31958 9.30657 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.003069 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.862199 B = 9121.129340 C =10315.462777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.027 4.027 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.310 5.310 6 N -0.355 5.355 7 C 0.087 3.913 8 C 0.116 3.884 9 C -0.308 4.308 10 C 0.585 3.415 11 O -0.590 6.590 12 N -0.602 5.602 13 C 0.098 3.902 14 C -0.127 4.127 15 C -0.104 4.104 16 C -0.094 4.094 17 H 0.047 0.953 18 C 0.159 3.841 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.978 3.022 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.275 1.275 28 C 0.130 3.870 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.225 0.775 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.026 0.974 47 H 0.029 0.971 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.074 0.926 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 7.110 29.895 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 C -0.189 4.189 4 C -0.048 4.048 5 N -0.132 5.132 6 N -0.133 5.133 7 C -0.051 4.051 8 C -0.036 4.036 9 C -0.323 4.323 10 C 0.374 3.626 11 O -0.470 6.470 12 N -0.333 5.333 13 C -0.024 4.024 14 C -0.165 4.165 15 C -0.142 4.142 16 C -0.114 4.114 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.392 5.392 20 C -0.378 4.378 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.806 3.194 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.201 1.201 28 C 0.007 3.993 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.146 0.854 39 H 0.242 0.758 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.808 7.687 30.327 31.296 hybrid contribution -0.144 -1.006 -2.169 2.395 sum 0.665 6.682 28.158 28.947 Atomic orbital electron populations 1.21697 0.92793 1.01435 1.02958 1.19680 0.97167 0.96306 0.91584 1.21726 1.00626 0.93475 1.03042 1.22273 0.94816 0.93889 0.93837 1.77037 1.20835 1.15607 0.99689 1.48695 1.36434 1.19739 1.08456 1.22431 1.06214 1.06028 0.70478 1.23434 0.95928 0.95378 0.88908 1.20096 1.14208 1.04575 0.93449 1.17884 0.81789 0.77564 0.85344 1.90802 1.57891 1.55098 1.43258 1.48109 1.06975 1.59892 1.18340 1.22156 0.90574 1.01207 0.88416 1.21822 0.97812 0.98115 0.98743 1.21501 0.96753 1.02029 0.93952 1.21540 0.96066 0.97925 0.95863 0.93493 1.20841 0.92065 0.97302 0.86587 1.42685 1.14303 1.69859 1.12307 1.19645 0.98040 1.28592 0.91565 0.90215 1.25679 0.96214 1.03131 1.02228 1.69872 1.06935 1.52614 1.32860 0.85151 0.76646 0.78572 0.79022 1.20135 1.22402 1.20053 1.21375 0.95700 0.95728 0.86480 0.91270 0.90885 0.94147 0.92164 0.93310 0.90998 0.91238 0.89193 0.88478 0.85410 0.75845 0.88048 0.88431 0.87006 0.93249 0.89891 0.90775 0.95576 0.95330 0.79839 0.94149 0.90762 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.17 71.98 0.66 -2.73 16 2 C -0.03 -0.77 3.31 -11.54 -0.04 -0.81 16 3 C -0.13 -3.10 9.18 71.98 0.66 -2.43 16 4 C 0.12 3.32 5.77 43.51 0.25 3.57 16 5 N -0.31 -7.42 12.50 -46.68 -0.58 -8.00 16 6 N -0.36 -5.64 3.98 -367.79 -1.46 -7.10 16 7 C 0.09 0.40 11.44 127.77 1.46 1.86 16 8 C 0.12 1.91 9.14 84.28 0.77 2.68 16 9 C -0.31 -8.40 5.13 -20.15 -0.10 -8.50 16 10 C 0.58 20.47 7.13 86.66 0.62 21.09 16 11 O -0.59 -27.62 15.84 -4.04 -0.06 -27.69 16 12 N -0.60 -17.63 2.98 -823.60 -2.45 -20.08 16 13 C 0.10 1.67 5.87 86.22 0.51 2.18 16 14 C -0.13 -2.15 6.07 30.53 0.19 -1.96 16 15 C -0.10 -2.30 5.17 30.62 0.16 -2.14 16 16 C -0.09 -3.17 2.38 -10.71 -0.03 -3.20 16 17 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 18 C 0.16 6.52 5.65 86.38 0.49 7.01 16 19 N -0.75 -40.80 5.38 -343.46 -1.85 -42.64 16 20 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 22 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 23 N -0.97 -64.03 13.06 21.65 0.28 -63.74 16 24 Si 0.98 48.32 29.55 68.60 2.03 50.34 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 28 C 0.13 4.67 5.51 86.36 0.48 5.15 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 2.18 7.00 -2.39 -0.02 2.16 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.23 1.58 7.64 -2.91 -0.02 1.55 16 40 H 0.10 1.39 4.61 -2.39 -0.01 1.38 16 41 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.37 22.22 6.89 -92.70 -0.64 21.58 16 49 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.05 2.29 6.23 -2.39 -0.01 2.27 16 Total: -1.00 -87.38 406.08 3.55 -83.84 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.27 Total: 31.40 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 7.37 Total: 3.69 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -6.06 Total: -141.58 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.06 Total: -27.69 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.34 kcal Total: -87.38 3.55 -83.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265634520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.163 kcal (2) G-P(sol) polarization free energy of solvation -87.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds