Wall clock time and date at job start Tue Mar 31 2020 20:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46857 * 2 1 4 4 C 1.52997 * 109.47247 * 240.00136 * 2 1 3 5 5 C 1.50693 * 109.46881 * 120.00094 * 2 1 3 6 6 C 1.39679 * 126.07165 * 75.00178 * 5 2 1 7 7 C 1.38405 * 105.36046 * 179.97438 * 6 5 2 8 8 C 1.47168 * 126.88231 * 180.02562 * 7 6 5 9 9 O 1.21624 * 119.99857 * 23.47776 * 8 7 6 10 10 N 1.34773 * 119.99767 * 203.47293 * 8 7 6 11 11 C 1.46918 * 120.63212 * 6.51087 * 10 8 7 12 12 C 1.53627 * 108.54564 * 126.36629 * 11 10 8 13 13 C 1.53044 * 109.24016 * 54.85301 * 12 11 10 14 14 C 1.53031 * 109.54093 * 298.51523 * 13 12 11 15 15 H 1.09007 * 109.49776 * 301.41595 * 14 13 12 16 16 C 1.53000 * 109.52863 * 181.33324 * 14 13 12 17 17 N 1.46504 * 109.47266 * 175.14121 * 16 14 13 18 18 C 1.36936 * 119.99690 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00239 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99550 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47152 * 90.00549 * 22 20 18 24 24 H 1.48501 * 109.47012 * 210.00028 * 22 20 18 25 25 H 1.48495 * 109.47354 * 330.00283 * 22 20 18 26 26 C 1.46929 * 120.62742 * 186.78598 * 10 8 7 27 27 N 1.36600 * 106.23380 * 0.02562 * 7 6 5 28 28 H 0.96995 * 125.19339 * 179.97438 * 27 7 6 29 29 N 1.28445 * 109.61741 * 359.97438 * 27 7 6 30 30 H 1.08988 * 109.47285 * 299.99876 * 1 2 3 31 31 H 1.09001 * 109.47016 * 60.00107 * 1 2 3 32 32 H 1.09005 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46884 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47300 * 300.00008 * 3 2 1 35 35 H 1.09002 * 109.47193 * 60.00096 * 3 2 1 36 36 H 1.09005 * 109.47515 * 299.99895 * 4 2 1 37 37 H 1.09001 * 109.47311 * 59.99938 * 4 2 1 38 38 H 1.08997 * 109.47366 * 179.97438 * 4 2 1 39 39 H 1.08000 * 127.31466 * 0.23991 * 6 5 2 40 40 H 1.09004 * 109.58476 * 246.19999 * 11 10 8 41 41 H 1.09001 * 109.58789 * 6.62440 * 11 10 8 42 42 H 1.08997 * 109.63217 * 294.86392 * 12 11 10 43 43 H 1.09003 * 109.45665 * 174.73616 * 12 11 10 44 44 H 1.09005 * 109.46031 * 178.49010 * 13 12 11 45 45 H 1.09003 * 109.44682 * 58.52493 * 13 12 11 46 46 H 1.08996 * 109.46934 * 295.14439 * 16 14 13 47 47 H 1.09002 * 109.46429 * 55.14274 * 16 14 13 48 48 H 0.96999 * 119.99734 * 0.02562 * 17 16 14 49 49 H 0.97001 * 119.99813 * 179.97438 * 21 20 18 50 50 H 1.09005 * 109.58684 * 353.37725 * 26 10 8 51 51 H 1.09001 * 109.58370 * 113.65941 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 2.0309 -2.0912 1.4410 7 6 2.5824 -2.2710 2.6976 8 6 2.8048 -3.5506 3.3898 9 8 2.9070 -4.5790 2.7486 10 7 2.8952 -3.5827 4.7341 11 6 2.6332 -2.3765 5.5310 12 6 1.5708 -2.7111 6.5890 13 6 2.0374 -3.9165 7.4086 14 6 2.1995 -5.1289 6.4890 15 1 1.2497 -5.3434 5.9989 16 6 2.6339 -6.3420 7.3139 17 7 2.6765 -7.5274 6.4541 18 6 3.0418 -8.7393 6.9765 19 1 3.2989 -8.8213 8.0222 20 6 3.0827 -9.8624 6.1617 21 7 3.4334 -11.0274 6.6639 22 14 2.6386 -9.7206 4.3528 23 1 3.8597 -9.4114 3.5661 24 1 2.0593 -11.0047 3.8832 25 1 1.6441 -8.6330 4.1710 26 6 3.2635 -4.8231 5.4302 27 7 2.8789 -1.0228 3.1667 28 1 3.2787 -0.8301 4.0291 29 7 2.5473 -0.1432 2.2913 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6788 -2.8562 0.7648 40 1 3.5524 -2.0555 6.0210 41 1 2.2662 -1.5819 4.8813 42 1 0.6270 -2.9484 6.0981 43 1 1.4326 -1.8543 7.2485 44 1 1.2984 -4.1405 8.1780 45 1 2.9935 -3.6872 7.8791 46 1 3.6238 -6.1611 7.7326 47 1 1.9215 -6.5052 8.1227 48 1 2.4466 -7.4536 5.5146 49 1 3.4616 -11.8123 6.0946 50 1 3.3126 -5.6433 4.7139 51 1 4.2342 -4.6984 5.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266795625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:45 Heat of formation + Delta-G solvation = 49.002880 kcal Electronic energy + Delta-G solvation = -29519.819719 eV Core-core repulsion = 25649.042666 eV Total energy + Delta-G solvation = -3870.777053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.99764 -40.15081 -37.80111 -37.26995 -35.24712 -33.18655 -31.94143 -31.35533 -31.16670 -30.06046 -27.61565 -27.53959 -26.08543 -25.93993 -23.37400 -22.89987 -22.66166 -21.32028 -20.81446 -19.98542 -19.09807 -17.99394 -17.45239 -16.61576 -16.18596 -15.94708 -15.26723 -15.10579 -14.74211 -14.72045 -14.31405 -14.22509 -14.04960 -13.98060 -13.64957 -13.56989 -13.21429 -13.05769 -12.69739 -12.59150 -12.50125 -12.43685 -11.94517 -11.80366 -11.63658 -11.49672 -11.38524 -11.35120 -11.28221 -10.98192 -10.82831 -10.74570 -10.56654 -10.38074 -10.16148 -10.04357 -9.55554 -9.39698 -9.36778 -8.89880 -8.79534 -7.22177 -5.74844 -3.10846 1.05493 2.26029 2.43333 2.64316 3.02466 3.44724 3.49781 3.53083 3.96832 4.18365 4.33619 4.45347 4.60336 4.63519 4.68000 4.69499 4.85315 4.93456 4.99228 5.00412 5.07612 5.22532 5.33641 5.35557 5.39879 5.44646 5.50145 5.50670 5.57487 5.60413 5.61395 5.61795 5.69935 5.75975 5.79437 5.83916 5.89646 5.93780 6.01395 6.04632 6.17995 6.20367 6.24494 6.32370 6.60479 6.64055 6.70007 7.11502 7.68263 7.90315 8.00181 8.43956 9.22768 9.95602 10.14464 11.43255 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.002795 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.552054 B =10013.748284 C =11339.900235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.042 3.958 6 C -0.151 4.151 7 C -0.028 4.028 8 C 0.586 3.414 9 O -0.512 6.512 10 N -0.608 5.608 11 C 0.087 3.913 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.112 4.112 15 H 0.075 0.925 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.119 3.881 27 N -0.385 5.385 28 H 0.446 0.554 29 N -0.271 5.271 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.029 0.971 47 H 0.031 0.969 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.100 0.900 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 29.399 -8.996 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.192 4.192 4 C -0.198 4.198 5 C -0.117 4.117 6 C -0.180 4.180 7 C -0.156 4.156 8 C 0.371 3.629 9 O -0.385 6.385 10 N -0.342 5.342 11 C -0.036 4.036 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.131 4.131 15 H 0.094 0.906 16 C 0.038 3.962 17 N -0.403 5.403 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.711 3.289 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.002 4.002 27 N -0.105 5.105 28 H 0.296 0.704 29 N -0.103 5.103 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.180 0.820 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.195 0.805 49 H 0.069 0.931 50 H 0.118 0.882 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.861 29.645 -8.712 31.139 hybrid contribution -0.262 -0.758 -0.977 1.264 sum -4.123 28.888 -9.688 30.747 Atomic orbital electron populations 1.21876 0.93260 1.02417 1.02059 1.18917 0.95440 0.94815 0.89356 1.21766 1.01284 0.94256 1.01884 1.21892 1.01454 1.00593 0.95881 1.21904 1.02817 0.91532 0.95415 1.22004 1.04314 0.96622 0.95046 1.21737 1.09881 0.86522 0.97454 1.17103 0.77384 0.86673 0.81700 1.90895 1.49237 1.32953 1.65393 1.48107 1.68752 1.12370 1.04960 1.22245 0.99760 0.87230 0.94396 1.21954 0.98380 0.99250 0.97301 1.21518 1.02027 0.93697 0.97765 1.21757 0.99347 0.95804 0.96241 0.90624 1.20608 0.98286 0.84677 0.92672 1.42773 1.83790 1.05494 1.08247 1.19027 1.38120 0.84118 0.96311 0.89213 1.24660 1.01349 0.95345 0.97611 1.69704 1.54330 0.98994 1.35137 0.86596 0.78682 0.76853 0.86724 1.20848 1.21688 1.20214 1.21828 0.97530 0.85468 0.95348 1.44372 1.46629 1.02852 1.16665 0.70441 1.73063 1.16836 1.20026 1.00371 0.92482 0.91861 0.92158 0.92508 0.92412 0.92040 0.91986 0.91828 0.92341 0.82025 0.90509 0.90255 0.91219 0.90471 0.90985 0.91392 0.95303 0.95095 0.80477 0.93055 0.88187 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.46 37.16 0.31 -0.65 16 2 C 0.02 0.13 0.96 -155.66 -0.15 -0.02 16 3 C -0.13 -0.97 8.04 37.16 0.30 -0.67 16 4 C -0.14 -1.00 8.20 37.16 0.30 -0.70 16 5 C 0.04 0.43 5.65 -82.47 -0.47 -0.03 16 6 C -0.15 -1.76 10.20 -38.98 -0.40 -2.16 16 7 C -0.03 -0.34 6.47 -82.06 -0.53 -0.87 16 8 C 0.59 8.55 7.65 -12.64 -0.10 8.45 16 9 O -0.51 -9.69 16.42 5.26 0.09 -9.60 16 10 N -0.61 -7.59 2.97 -173.87 -0.52 -8.10 16 11 C 0.09 0.72 5.40 -3.49 -0.02 0.70 16 12 C -0.13 -1.09 6.10 -26.38 -0.16 -1.25 16 13 C -0.11 -1.17 5.17 -26.69 -0.14 -1.31 16 14 C -0.11 -1.63 2.37 -90.50 -0.21 -1.84 16 15 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 16 C 0.17 3.07 5.66 -4.04 -0.02 3.05 16 17 N -0.76 -18.16 5.18 -59.91 -0.31 -18.47 16 18 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 22 Si 0.88 23.18 27.73 -169.99 -4.71 18.46 16 23 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 25 H -0.28 -6.99 6.52 56.52 0.37 -6.63 16 26 C 0.12 1.78 5.53 -3.71 -0.02 1.76 16 27 N -0.38 -3.67 5.66 33.48 0.19 -3.48 16 28 H 0.45 3.02 6.37 -190.46 -1.21 1.81 16 29 N -0.27 -2.83 11.48 33.64 0.39 -2.44 16 30 H 0.06 0.42 8.14 -51.94 -0.42 0.00 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.06 0.45 7.59 -51.93 -0.39 0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.16 1.80 7.79 -52.49 -0.41 1.39 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.57 4.18 -51.93 -0.22 0.35 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.36 8.75 4.75 -40.82 -0.19 8.55 16 49 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 50 H 0.10 1.85 6.20 -51.93 -0.32 1.53 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -35.10 397.56 -9.19 -44.29 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -9.52 Total: 5.05 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.55 Total: -2.66 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.52 Total: -61.54 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.10 -9.19 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266795625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.297 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds