Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46857 * 2 1 4 4 C 1.52997 * 109.47247 * 240.00136 * 2 1 3 5 5 C 1.50693 * 109.46881 * 120.00094 * 2 1 3 6 6 C 1.39679 * 126.07165 * 75.00178 * 5 2 1 7 7 C 1.38405 * 105.36046 * 179.97438 * 6 5 2 8 8 C 1.47168 * 126.88231 * 180.02562 * 7 6 5 9 9 O 1.21624 * 119.99857 * 23.47776 * 8 7 6 10 10 N 1.34773 * 119.99767 * 203.47293 * 8 7 6 11 11 C 1.46918 * 120.63212 * 6.51087 * 10 8 7 12 12 C 1.53627 * 108.54564 * 126.36629 * 11 10 8 13 13 C 1.53044 * 109.24016 * 54.85301 * 12 11 10 14 14 C 1.53031 * 109.54093 * 298.51523 * 13 12 11 15 15 H 1.09007 * 109.49776 * 301.41595 * 14 13 12 16 16 C 1.53000 * 109.52863 * 181.33324 * 14 13 12 17 17 N 1.46504 * 109.47266 * 175.14121 * 16 14 13 18 18 C 1.36936 * 119.99690 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00239 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99550 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47152 * 90.00549 * 22 20 18 24 24 H 1.48501 * 109.47012 * 210.00028 * 22 20 18 25 25 H 1.48495 * 109.47354 * 330.00283 * 22 20 18 26 26 C 1.46929 * 120.62742 * 186.78598 * 10 8 7 27 27 N 1.36600 * 106.23380 * 0.02562 * 7 6 5 28 28 H 0.96995 * 125.19339 * 179.97438 * 27 7 6 29 29 N 1.28445 * 109.61741 * 359.97438 * 27 7 6 30 30 H 1.08988 * 109.47285 * 299.99876 * 1 2 3 31 31 H 1.09001 * 109.47016 * 60.00107 * 1 2 3 32 32 H 1.09005 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46884 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47300 * 300.00008 * 3 2 1 35 35 H 1.09002 * 109.47193 * 60.00096 * 3 2 1 36 36 H 1.09005 * 109.47515 * 299.99895 * 4 2 1 37 37 H 1.09001 * 109.47311 * 59.99938 * 4 2 1 38 38 H 1.08997 * 109.47366 * 179.97438 * 4 2 1 39 39 H 1.08000 * 127.31466 * 0.23991 * 6 5 2 40 40 H 1.09004 * 109.58476 * 246.19999 * 11 10 8 41 41 H 1.09001 * 109.58789 * 6.62440 * 11 10 8 42 42 H 1.08997 * 109.63217 * 294.86392 * 12 11 10 43 43 H 1.09003 * 109.45665 * 174.73616 * 12 11 10 44 44 H 1.09005 * 109.46031 * 178.49010 * 13 12 11 45 45 H 1.09003 * 109.44682 * 58.52493 * 13 12 11 46 46 H 1.08996 * 109.46934 * 295.14439 * 16 14 13 47 47 H 1.09002 * 109.46429 * 55.14274 * 16 14 13 48 48 H 0.96999 * 119.99734 * 0.02562 * 17 16 14 49 49 H 0.97001 * 119.99813 * 179.97438 * 21 20 18 50 50 H 1.09005 * 109.58684 * 353.37725 * 26 10 8 51 51 H 1.09001 * 109.58370 * 113.65941 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 2.0309 -2.0912 1.4410 7 6 2.5824 -2.2710 2.6976 8 6 2.8048 -3.5506 3.3898 9 8 2.9070 -4.5790 2.7486 10 7 2.8952 -3.5827 4.7341 11 6 2.6332 -2.3765 5.5310 12 6 1.5708 -2.7111 6.5890 13 6 2.0374 -3.9165 7.4086 14 6 2.1995 -5.1289 6.4890 15 1 1.2497 -5.3434 5.9989 16 6 2.6339 -6.3420 7.3139 17 7 2.6765 -7.5274 6.4541 18 6 3.0418 -8.7393 6.9765 19 1 3.2989 -8.8213 8.0222 20 6 3.0827 -9.8624 6.1617 21 7 3.4334 -11.0274 6.6639 22 14 2.6386 -9.7206 4.3528 23 1 3.8597 -9.4114 3.5661 24 1 2.0593 -11.0047 3.8832 25 1 1.6441 -8.6330 4.1710 26 6 3.2635 -4.8231 5.4302 27 7 2.8789 -1.0228 3.1667 28 1 3.2787 -0.8301 4.0291 29 7 2.5473 -0.1432 2.2913 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6788 -2.8562 0.7648 40 1 3.5524 -2.0555 6.0210 41 1 2.2662 -1.5819 4.8813 42 1 0.6270 -2.9484 6.0981 43 1 1.4326 -1.8543 7.2485 44 1 1.2984 -4.1405 8.1780 45 1 2.9935 -3.6872 7.8791 46 1 3.6238 -6.1611 7.7326 47 1 1.9215 -6.5052 8.1227 48 1 2.4466 -7.4536 5.5146 49 1 3.4616 -11.8123 6.0946 50 1 3.3126 -5.6433 4.7139 51 1 4.2342 -4.6984 5.9100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266795625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = 25.750776 kcal Electronic energy + Delta-G solvation = -29520.828006 eV Core-core repulsion = 25649.042666 eV Total energy + Delta-G solvation = -3871.785340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.83950 -41.20512 -38.97534 -37.90825 -36.84224 -34.66967 -33.35875 -32.40489 -32.19689 -31.38350 -28.23748 -28.07439 -27.52452 -26.96959 -24.71966 -23.96667 -23.56293 -22.68252 -21.85343 -21.06244 -19.87741 -19.63542 -18.74797 -17.61124 -17.15009 -16.93699 -16.69408 -16.18653 -15.92968 -15.83143 -15.60246 -15.16464 -15.02088 -14.89633 -14.72348 -14.52556 -14.43965 -14.22329 -14.17165 -13.89107 -13.40557 -13.12479 -13.05424 -12.96117 -12.81436 -12.50985 -12.39126 -12.27164 -12.14380 -12.01137 -11.94982 -11.90970 -11.86431 -11.68582 -11.49606 -11.47208 -11.23708 -11.04127 -10.32687 -10.15424 -9.82343 -9.33132 -8.07854 -5.39639 0.09792 1.32335 1.35862 1.40321 1.41736 1.53382 1.70746 2.05647 2.41748 3.12492 3.24371 3.39372 3.48619 3.64979 3.78142 3.80493 3.91280 3.97012 4.11262 4.12517 4.18902 4.25189 4.32368 4.42561 4.43411 4.63144 4.63786 4.70655 4.73676 4.82217 4.83455 4.86170 4.95216 4.99406 5.02611 5.07420 5.08384 5.12780 5.14168 5.24825 5.27373 5.29512 5.43177 5.44970 5.46798 5.49009 5.72238 5.88732 6.11588 6.17320 6.76830 6.91367 7.03246 7.80811 7.96758 9.13644 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.002795 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.552054 B =10013.748284 C =11339.900235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.139 4.139 5 C 0.041 3.959 6 C -0.162 4.162 7 C -0.038 4.038 8 C 0.582 3.418 9 O -0.568 6.568 10 N -0.601 5.601 11 C 0.081 3.919 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.099 4.099 15 H 0.057 0.943 16 C 0.160 3.840 17 N -0.763 5.763 18 C -0.229 4.229 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.979 5.979 22 Si 0.944 3.056 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.265 1.265 26 C 0.122 3.878 27 N -0.367 5.367 28 H 0.458 0.542 29 N -0.270 5.270 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.058 0.942 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 33.307 -9.193 34.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 C -0.188 4.188 4 C -0.197 4.197 5 C -0.117 4.117 6 C -0.192 4.192 7 C -0.166 4.166 8 C 0.370 3.630 9 O -0.445 6.445 10 N -0.333 5.333 11 C -0.041 4.041 12 C -0.162 4.162 13 C -0.144 4.144 14 C -0.119 4.119 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.408 5.408 18 C -0.360 4.360 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.772 3.228 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.190 1.190 26 C 0.000 4.000 27 N -0.090 5.090 28 H 0.311 0.689 29 N -0.102 5.102 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.176 0.824 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.500 33.651 -8.855 35.086 hybrid contribution -0.051 -1.891 -0.806 2.056 sum -4.551 31.760 -9.661 33.507 Atomic orbital electron populations 1.21861 0.92420 1.02280 1.02780 1.19063 0.96083 0.95114 0.88528 1.21737 1.00735 0.93712 1.02591 1.21895 1.00932 1.00541 0.96361 1.22267 1.02350 0.90993 0.96112 1.22157 1.04477 0.97447 0.95076 1.21375 1.11163 0.86349 0.97721 1.17437 0.76592 0.86812 0.82196 1.90860 1.52017 1.34964 1.66685 1.48140 1.67576 1.12944 1.04622 1.22628 1.01554 0.85586 0.94309 1.21948 0.97459 0.99494 0.97344 1.21513 1.03398 0.92335 0.97188 1.21616 0.97978 0.96007 0.96321 0.92438 1.20847 0.98752 0.84353 0.92647 1.42879 1.83416 1.05684 1.08855 1.19073 1.35925 0.85827 0.95199 0.91656 1.25345 1.02627 0.95232 1.01661 1.69845 1.56720 0.99802 1.36634 0.85587 0.78459 0.76913 0.81823 1.21012 1.21636 1.19042 1.21622 0.98381 0.85539 0.94505 1.44361 1.45940 1.01683 1.17013 0.68897 1.73073 1.16689 1.19923 1.00539 0.92880 0.90017 0.92744 0.93296 0.90581 0.92475 0.92503 0.89939 0.93154 0.82367 0.87187 0.88933 0.92515 0.86757 0.90343 0.89606 0.94526 0.94896 0.80588 0.93272 0.92359 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.46 71.98 0.61 -1.02 16 2 C 0.01 0.20 0.96 -52.93 -0.05 0.15 16 3 C -0.13 -1.59 8.04 71.98 0.58 -1.01 16 4 C -0.14 -1.79 8.20 71.98 0.59 -1.20 16 5 C 0.04 0.79 5.65 43.05 0.24 1.03 16 6 C -0.16 -3.72 10.20 22.66 0.23 -3.49 16 7 C -0.04 -0.88 6.47 40.79 0.26 -0.61 16 8 C 0.58 16.95 7.65 86.59 0.66 17.61 16 9 O -0.57 -22.33 16.42 -4.11 -0.07 -22.39 16 10 N -0.60 -14.17 2.97 -822.24 -2.44 -16.61 16 11 C 0.08 1.04 5.40 86.51 0.47 1.51 16 12 C -0.12 -1.59 6.10 30.82 0.19 -1.40 16 13 C -0.11 -1.87 5.17 30.62 0.16 -1.71 16 14 C -0.10 -2.77 2.37 -10.72 -0.03 -2.80 16 15 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 16 C 0.16 5.84 5.66 86.38 0.49 6.33 16 17 N -0.76 -36.84 5.18 -343.45 -1.78 -38.62 16 18 C -0.23 -13.39 10.47 84.03 0.88 -12.51 16 19 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 20 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 21 N -0.98 -64.19 13.97 21.65 0.30 -63.88 16 22 Si 0.94 49.18 27.73 68.60 1.90 51.08 16 23 H -0.28 -14.74 7.11 99.48 0.71 -14.04 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 25 H -0.27 -13.14 6.52 99.48 0.65 -12.50 16 26 C 0.12 3.54 5.53 86.36 0.48 4.02 16 27 N -0.37 -6.20 5.66 -47.99 -0.27 -6.48 16 28 H 0.46 4.75 6.37 -220.01 -1.40 3.35 16 29 N -0.27 -5.07 11.48 -47.49 -0.55 -5.62 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.06 0.78 7.59 -2.38 -0.02 0.76 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.16 3.63 7.79 -2.91 -0.02 3.61 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.99 4.18 -2.39 -0.01 0.98 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.36 17.60 4.75 -92.71 -0.44 17.16 16 49 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 50 H 0.06 2.22 6.20 -2.38 -0.01 2.20 16 51 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -79.33 397.56 2.36 -76.97 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.97 Total: 23.66 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.23 Total: 1.89 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -4.73 Total: -131.20 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.39 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.90 Total: 51.08 kcal Total: -79.33 2.36 -76.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266795625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.720 kcal (2) G-P(sol) polarization free energy of solvation -79.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds