Wall clock time and date at job start Tue Mar 31 2020 20:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 C 1.53005 * 109.47206 * 240.00458 * 2 1 3 5 5 C 1.50699 * 109.47612 * 120.00108 * 2 1 3 6 6 C 1.39677 * 126.06615 * 75.28373 * 5 2 1 7 7 C 1.38398 * 105.35740 * 180.09564 * 6 5 2 8 8 C 1.47163 * 126.88667 * 179.91731 * 7 6 5 9 9 O 1.21629 * 119.99658 * 336.41905 * 8 7 6 10 10 N 1.34774 * 120.00449 * 156.41945 * 8 7 6 11 11 C 1.46923 * 120.62856 * 353.24181 * 10 8 7 12 12 C 1.53197 * 108.77647 * 233.58643 * 11 10 8 13 13 C 1.53036 * 109.31191 * 305.36783 * 12 11 10 14 14 C 1.53046 * 109.54162 * 61.36496 * 13 12 11 15 15 H 1.09001 * 109.52061 * 58.59977 * 14 13 12 16 16 C 1.52997 * 109.49717 * 178.68387 * 14 13 12 17 17 N 1.46497 * 109.46819 * 184.83576 * 16 14 13 18 18 C 1.36935 * 119.99999 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00342 * 359.97438 * 18 17 16 20 20 C 1.38823 * 120.00150 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99990 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99649 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46829 * 269.99583 * 22 20 18 24 24 H 1.48501 * 109.47444 * 29.99852 * 22 20 18 25 25 H 1.48500 * 109.46903 * 150.00134 * 22 20 18 26 26 C 1.46927 * 120.63223 * 173.22263 * 10 8 7 27 27 N 1.36600 * 106.23148 * 359.64989 * 7 6 5 28 28 H 0.97008 * 125.19143 * 180.20398 * 27 7 6 29 29 N 1.28441 * 109.61948 * 0.23089 * 27 7 6 30 30 H 1.08999 * 109.47055 * 299.99674 * 1 2 3 31 31 H 1.08994 * 109.47520 * 59.99801 * 1 2 3 32 32 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47091 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47510 * 300.00455 * 3 2 1 35 35 H 1.08999 * 109.46988 * 60.00284 * 3 2 1 36 36 H 1.08998 * 109.47004 * 300.00128 * 4 2 1 37 37 H 1.09002 * 109.46888 * 59.99753 * 4 2 1 38 38 H 1.08995 * 109.47162 * 179.97438 * 4 2 1 39 39 H 1.07999 * 127.31855 * 359.97434 * 6 5 2 40 40 H 1.09004 * 109.58954 * 353.37292 * 11 10 8 41 41 H 1.08995 * 109.58860 * 113.65831 * 11 10 8 42 42 H 1.09007 * 109.49593 * 65.31434 * 12 11 10 43 43 H 1.08995 * 109.49874 * 185.38338 * 12 11 10 44 44 H 1.08998 * 109.46197 * 301.33845 * 13 12 11 45 45 H 1.09000 * 109.46222 * 181.37996 * 13 12 11 46 46 H 1.08998 * 109.47278 * 64.83611 * 16 14 13 47 47 H 1.08999 * 109.47365 * 304.83136 * 16 14 13 48 48 H 0.97005 * 120.00238 * 359.97438 * 17 16 14 49 49 H 0.96999 * 119.99892 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.58565 * 6.62313 * 26 10 8 51 51 H 1.09004 * 109.58573 * 246.19818 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.0361 -2.0916 1.4386 7 6 2.5830 -2.2710 2.6972 8 6 2.8060 -3.5506 3.3892 9 8 2.1465 -4.5274 3.0886 10 7 3.7408 -3.6400 4.3558 11 6 4.6450 -2.5147 4.6291 12 6 6.0908 -3.0176 4.5676 13 6 6.2555 -4.2024 5.5220 14 6 5.3292 -5.3412 5.0891 15 1 5.5682 -5.6367 4.0675 16 6 5.5186 -6.5371 6.0243 17 7 4.7185 -7.6656 5.5421 18 6 4.7289 -8.8531 6.2239 19 1 5.3271 -8.9580 7.1168 20 6 3.9703 -9.9223 5.7672 21 7 3.9806 -11.0639 6.4223 22 14 2.9360 -9.7412 4.2222 23 1 1.5806 -9.2572 4.5880 24 1 3.5800 -8.7652 3.3069 25 1 2.8251 -11.0575 3.5437 26 6 3.8749 -4.8646 5.1566 27 7 2.8798 -1.0228 3.1661 28 1 3.2799 -0.8301 4.0286 29 7 2.5477 -0.1432 2.2911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9565 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6850 -2.8566 0.7620 40 1 4.4967 -1.7365 3.8804 41 1 4.4379 -2.1120 5.6206 42 1 6.3227 -3.3346 3.5508 43 1 6.7677 -2.2157 4.8621 44 1 5.9996 -3.8913 6.5348 45 1 7.2895 -4.5467 5.4985 46 1 5.1964 -6.2667 7.0299 47 1 6.5711 -6.8201 6.0438 48 1 4.1808 -7.5714 4.7402 49 1 3.4509 -11.8111 6.1030 50 1 3.2183 -5.6369 4.7559 51 1 3.6067 -4.6552 6.1922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266795626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:50 Heat of formation + Delta-G solvation = 48.911962 kcal Electronic energy + Delta-G solvation = -29520.558690 eV Core-core repulsion = 25649.777694 eV Total energy + Delta-G solvation = -3870.780996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.99960 -40.15691 -37.80821 -37.26962 -35.25161 -33.18659 -31.95681 -31.35529 -31.16746 -30.06765 -27.62009 -27.53531 -26.08715 -25.94114 -23.37426 -22.89798 -22.66360 -21.32065 -20.81437 -19.98544 -19.09813 -17.99399 -17.45292 -16.60650 -16.18882 -15.96308 -15.27488 -15.10862 -14.74065 -14.69106 -14.33094 -14.19069 -14.08506 -14.00393 -13.64512 -13.57251 -13.21420 -13.05587 -12.69789 -12.58951 -12.50270 -12.43765 -11.94559 -11.80432 -11.63769 -11.49573 -11.38736 -11.35050 -11.27759 -10.98235 -10.82797 -10.74609 -10.56885 -10.38116 -10.16080 -10.04328 -9.55561 -9.39833 -9.36831 -8.89899 -8.79681 -7.22191 -5.74866 -3.10831 1.05432 2.26004 2.43491 2.64112 3.02500 3.44716 3.49761 3.53063 3.96835 4.18339 4.33270 4.45285 4.61044 4.63506 4.67782 4.69657 4.85291 4.93383 4.99645 5.00421 5.07571 5.22570 5.33963 5.35162 5.40015 5.44564 5.50145 5.50812 5.57440 5.60373 5.61372 5.61677 5.69938 5.75957 5.79367 5.83906 5.89468 5.93793 6.01402 6.04468 6.17906 6.20340 6.24493 6.32329 6.60452 6.64048 6.69967 7.11454 7.68285 7.90248 8.00210 8.43929 9.22753 9.95589 10.14442 11.43236 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002795 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.826543 B =10014.858120 C =11341.100386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.042 3.958 6 C -0.151 4.151 7 C -0.028 4.028 8 C 0.586 3.414 9 O -0.512 6.512 10 N -0.608 5.608 11 C 0.088 3.912 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.112 4.112 15 H 0.075 0.925 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.276 1.276 25 H -0.291 1.291 26 C 0.119 3.881 27 N -0.385 5.385 28 H 0.446 0.554 29 N -0.271 5.271 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.031 0.969 48 H 0.362 0.638 49 H 0.259 0.741 50 H 0.100 0.900 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 29.141 -10.679 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.192 4.192 4 C -0.198 4.198 5 C -0.117 4.117 6 C -0.180 4.180 7 C -0.156 4.156 8 C 0.371 3.629 9 O -0.385 6.385 10 N -0.342 5.342 11 C -0.036 4.036 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.132 4.132 15 H 0.094 0.906 16 C 0.038 3.962 17 N -0.403 5.403 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.711 3.289 23 H -0.208 1.208 24 H -0.202 1.202 25 H -0.217 1.217 26 C -0.002 4.002 27 N -0.105 5.105 28 H 0.296 0.704 29 N -0.103 5.103 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.180 0.820 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.195 0.805 49 H 0.069 0.931 50 H 0.118 0.882 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.599 29.420 -10.183 31.138 hybrid contribution -0.635 -0.733 -0.810 1.264 sum -1.234 28.687 -10.994 30.746 Atomic orbital electron populations 1.21876 0.93242 1.02478 1.02053 1.18919 0.95467 0.94805 0.89337 1.21768 1.01251 0.94268 1.01896 1.21892 1.01386 1.00602 0.95918 1.21901 1.02776 0.91514 0.95478 1.22002 1.03918 0.96625 0.95443 1.21734 1.09352 0.86615 0.97890 1.17102 0.80461 0.86143 0.79145 1.90896 1.47822 1.36489 1.63269 1.48106 1.33563 1.16914 1.35601 1.22149 0.91057 0.88950 1.01438 1.21878 0.94709 0.99027 1.01301 1.21516 1.00270 0.94356 0.98857 1.21762 0.93991 0.95886 1.01536 0.90624 1.20607 0.95248 0.85624 0.94760 1.42773 1.55383 1.10875 1.31273 1.19029 1.23673 0.87625 1.07256 0.89213 1.24663 1.00003 0.95725 0.98574 1.69703 1.44845 1.02698 1.40915 0.86596 0.81177 0.76862 0.84219 1.20848 1.20214 1.21687 1.21831 0.98058 0.85465 0.94818 1.44374 1.46399 1.02896 1.16846 0.70440 1.73058 1.16884 1.20041 1.00307 0.92479 0.91860 0.92108 0.92508 0.92421 0.92038 0.92003 0.91822 0.92369 0.82026 0.90279 0.90547 0.91237 0.90431 0.91385 0.90986 0.95303 0.95095 0.80477 0.93055 0.88174 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.46 37.15 0.31 -0.68 16 2 C 0.02 0.13 0.97 -155.66 -0.15 -0.02 16 3 C -0.13 -0.96 8.04 37.16 0.30 -0.66 16 4 C -0.14 -0.97 8.20 37.16 0.30 -0.67 16 5 C 0.04 0.43 5.65 -82.47 -0.47 -0.03 16 6 C -0.15 -1.76 10.20 -38.99 -0.40 -2.16 16 7 C -0.03 -0.34 6.47 -82.06 -0.53 -0.87 16 8 C 0.59 8.55 7.65 -12.64 -0.10 8.45 16 9 O -0.51 -9.69 16.42 5.25 0.09 -9.60 16 10 N -0.61 -7.59 2.97 -174.13 -0.52 -8.11 16 11 C 0.09 0.72 5.36 -3.71 -0.02 0.70 16 12 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 13 C -0.11 -1.17 5.17 -26.69 -0.14 -1.31 16 14 C -0.11 -1.63 2.38 -90.50 -0.22 -1.85 16 15 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 16 C 0.17 3.07 5.65 -4.05 -0.02 3.05 16 17 N -0.76 -18.16 5.18 -59.91 -0.31 -18.47 16 18 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 22 Si 0.88 23.18 27.73 -169.99 -4.71 18.46 16 23 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.99 6.52 56.52 0.37 -6.63 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 26 C 0.12 1.78 5.53 -3.71 -0.02 1.76 16 27 N -0.38 -3.67 5.66 33.48 0.19 -3.48 16 28 H 0.45 3.02 6.37 -190.45 -1.21 1.81 16 29 N -0.27 -2.83 11.47 33.64 0.39 -2.44 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.06 0.44 7.59 -51.93 -0.39 0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.16 1.80 7.78 -52.49 -0.41 1.39 16 40 H 0.08 0.57 4.20 -51.93 -0.22 0.35 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.36 8.75 4.75 -40.82 -0.19 8.55 16 49 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 50 H 0.10 1.86 6.20 -51.93 -0.32 1.53 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -35.10 397.51 -9.20 -44.30 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -9.52 Total: 5.06 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.56 Total: -2.66 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.52 Total: -61.55 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.10 -9.20 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266795626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.212 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds