Wall clock time and date at job start Tue Mar 31 2020 20:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 C 1.53005 * 109.47206 * 240.00458 * 2 1 3 5 5 C 1.50699 * 109.47612 * 120.00108 * 2 1 3 6 6 C 1.39677 * 126.06615 * 75.28373 * 5 2 1 7 7 C 1.38398 * 105.35740 * 180.09564 * 6 5 2 8 8 C 1.47163 * 126.88667 * 179.91731 * 7 6 5 9 9 O 1.21629 * 119.99658 * 336.41905 * 8 7 6 10 10 N 1.34774 * 120.00449 * 156.41945 * 8 7 6 11 11 C 1.46923 * 120.62856 * 353.24181 * 10 8 7 12 12 C 1.53197 * 108.77647 * 233.58643 * 11 10 8 13 13 C 1.53036 * 109.31191 * 305.36783 * 12 11 10 14 14 C 1.53046 * 109.54162 * 61.36496 * 13 12 11 15 15 H 1.09001 * 109.52061 * 58.59977 * 14 13 12 16 16 C 1.52997 * 109.49717 * 178.68387 * 14 13 12 17 17 N 1.46497 * 109.46819 * 184.83576 * 16 14 13 18 18 C 1.36935 * 119.99999 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00342 * 359.97438 * 18 17 16 20 20 C 1.38823 * 120.00150 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99990 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99649 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46829 * 269.99583 * 22 20 18 24 24 H 1.48501 * 109.47444 * 29.99852 * 22 20 18 25 25 H 1.48500 * 109.46903 * 150.00134 * 22 20 18 26 26 C 1.46927 * 120.63223 * 173.22263 * 10 8 7 27 27 N 1.36600 * 106.23148 * 359.64989 * 7 6 5 28 28 H 0.97008 * 125.19143 * 180.20398 * 27 7 6 29 29 N 1.28441 * 109.61948 * 0.23089 * 27 7 6 30 30 H 1.08999 * 109.47055 * 299.99674 * 1 2 3 31 31 H 1.08994 * 109.47520 * 59.99801 * 1 2 3 32 32 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47091 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47510 * 300.00455 * 3 2 1 35 35 H 1.08999 * 109.46988 * 60.00284 * 3 2 1 36 36 H 1.08998 * 109.47004 * 300.00128 * 4 2 1 37 37 H 1.09002 * 109.46888 * 59.99753 * 4 2 1 38 38 H 1.08995 * 109.47162 * 179.97438 * 4 2 1 39 39 H 1.07999 * 127.31855 * 359.97434 * 6 5 2 40 40 H 1.09004 * 109.58954 * 353.37292 * 11 10 8 41 41 H 1.08995 * 109.58860 * 113.65831 * 11 10 8 42 42 H 1.09007 * 109.49593 * 65.31434 * 12 11 10 43 43 H 1.08995 * 109.49874 * 185.38338 * 12 11 10 44 44 H 1.08998 * 109.46197 * 301.33845 * 13 12 11 45 45 H 1.09000 * 109.46222 * 181.37996 * 13 12 11 46 46 H 1.08998 * 109.47278 * 64.83611 * 16 14 13 47 47 H 1.08999 * 109.47365 * 304.83136 * 16 14 13 48 48 H 0.97005 * 120.00238 * 359.97438 * 17 16 14 49 49 H 0.96999 * 119.99892 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.58565 * 6.62313 * 26 10 8 51 51 H 1.09004 * 109.58573 * 246.19818 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.0361 -2.0916 1.4386 7 6 2.5830 -2.2710 2.6972 8 6 2.8060 -3.5506 3.3892 9 8 2.1465 -4.5274 3.0886 10 7 3.7408 -3.6400 4.3558 11 6 4.6450 -2.5147 4.6291 12 6 6.0908 -3.0176 4.5676 13 6 6.2555 -4.2024 5.5220 14 6 5.3292 -5.3412 5.0891 15 1 5.5682 -5.6367 4.0675 16 6 5.5186 -6.5371 6.0243 17 7 4.7185 -7.6656 5.5421 18 6 4.7289 -8.8531 6.2239 19 1 5.3271 -8.9580 7.1168 20 6 3.9703 -9.9223 5.7672 21 7 3.9806 -11.0639 6.4223 22 14 2.9360 -9.7412 4.2222 23 1 1.5806 -9.2572 4.5880 24 1 3.5800 -8.7652 3.3069 25 1 2.8251 -11.0575 3.5437 26 6 3.8749 -4.8646 5.1566 27 7 2.8798 -1.0228 3.1661 28 1 3.2799 -0.8301 4.0286 29 7 2.5477 -0.1432 2.2911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9565 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 1.6850 -2.8566 0.7620 40 1 4.4967 -1.7365 3.8804 41 1 4.4379 -2.1120 5.6206 42 1 6.3227 -3.3346 3.5508 43 1 6.7677 -2.2157 4.8621 44 1 5.9996 -3.8913 6.5348 45 1 7.2895 -4.5467 5.4985 46 1 5.1964 -6.2667 7.0299 47 1 6.5711 -6.8201 6.0438 48 1 4.1808 -7.5714 4.7402 49 1 3.4509 -11.8111 6.1030 50 1 3.2183 -5.6369 4.7559 51 1 3.6067 -4.6552 6.1922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266795626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:49 Heat of formation + Delta-G solvation = 25.651294 kcal Electronic energy + Delta-G solvation = -29521.567348 eV Core-core repulsion = 25649.777694 eV Total energy + Delta-G solvation = -3871.789654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.84142 -41.21038 -38.98140 -37.90764 -36.84677 -34.66880 -33.36786 -32.41262 -32.19757 -31.39089 -28.23224 -28.08081 -27.52395 -26.97322 -24.71682 -23.96901 -23.56370 -22.68199 -21.85420 -21.06175 -19.87736 -19.63577 -18.74779 -17.60629 -17.14633 -16.95008 -16.69512 -16.19892 -15.92668 -15.83224 -15.58123 -15.16929 -15.03393 -14.88046 -14.73573 -14.54826 -14.44331 -14.22229 -14.16537 -13.88939 -13.40736 -13.12589 -13.05968 -12.95543 -12.81419 -12.50911 -12.39131 -12.27016 -12.13983 -12.01447 -11.94956 -11.90909 -11.86450 -11.68653 -11.49593 -11.47267 -11.23466 -11.04100 -10.32775 -10.15566 -9.82573 -9.33150 -8.07879 -5.39625 0.09724 1.32344 1.35864 1.40322 1.41697 1.53333 1.70846 2.05586 2.41750 3.12502 3.24328 3.39405 3.48551 3.64690 3.78230 3.80461 3.91920 3.97043 4.11347 4.12395 4.18876 4.25487 4.32304 4.42479 4.43598 4.63167 4.63795 4.70687 4.73527 4.82233 4.83396 4.86149 4.95164 4.99362 5.02520 5.07353 5.08342 5.12829 5.14199 5.24840 5.27382 5.29471 5.43130 5.45073 5.46378 5.49365 5.72272 5.88753 6.11543 6.17293 6.76767 6.91384 7.03218 7.80813 7.96736 9.13625 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002795 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.826543 B =10014.858120 C =11341.100386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.139 4.139 5 C 0.041 3.959 6 C -0.162 4.162 7 C -0.038 4.038 8 C 0.582 3.418 9 O -0.568 6.568 10 N -0.601 5.601 11 C 0.081 3.919 12 C -0.125 4.125 13 C -0.106 4.106 14 C -0.100 4.100 15 H 0.057 0.943 16 C 0.160 3.840 17 N -0.763 5.763 18 C -0.229 4.229 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.979 5.979 22 Si 0.944 3.056 23 H -0.284 1.284 24 H -0.265 1.265 25 H -0.290 1.290 26 C 0.122 3.878 27 N -0.367 5.367 28 H 0.458 0.542 29 N -0.270 5.270 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.159 0.841 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.033 0.967 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.058 0.942 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 32.960 -11.467 34.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.117 4.117 6 C -0.192 4.192 7 C -0.166 4.166 8 C 0.370 3.630 9 O -0.445 6.445 10 N -0.333 5.333 11 C -0.041 4.041 12 C -0.163 4.163 13 C -0.144 4.144 14 C -0.119 4.119 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.408 5.408 18 C -0.360 4.360 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.772 3.228 23 H -0.210 1.210 24 H -0.190 1.190 25 H -0.216 1.216 26 C 0.000 4.000 27 N -0.090 5.090 28 H 0.311 0.689 29 N -0.102 5.102 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.176 0.824 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.194 0.806 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.148 33.331 -10.951 35.084 hybrid contribution -0.770 -1.843 -0.484 2.055 sum -0.622 31.488 -11.434 33.506 Atomic orbital electron populations 1.21870 0.92706 1.02210 1.02684 1.19064 0.95874 0.95215 0.88638 1.21736 1.00898 0.93623 1.02489 1.21889 1.01076 1.00472 0.96204 1.22264 1.02325 0.90969 0.96169 1.22155 1.03978 0.97454 0.95563 1.21372 1.10676 0.86446 0.98116 1.17437 0.80151 0.86319 0.79119 1.90861 1.50036 1.38479 1.65153 1.48140 1.33526 1.17209 1.34403 1.22531 0.90133 0.87673 1.03722 1.21874 0.95248 0.99101 1.00049 1.21511 0.99289 0.93355 1.00273 1.21621 0.94977 0.95852 0.99498 0.92437 1.20846 0.94273 0.85474 0.96002 1.42879 1.56082 1.10937 1.30937 1.19075 1.21700 0.89106 1.06156 0.91661 1.25349 1.02030 0.95698 1.01790 1.69845 1.46576 1.03647 1.42930 0.85586 0.79404 0.76817 0.80972 1.21006 1.19041 1.21632 1.21624 0.97310 0.85687 0.95428 1.44363 1.45696 1.01732 1.17202 0.68897 1.73068 1.16768 1.19924 1.00452 0.93146 0.89930 0.92846 0.92978 0.90615 0.92681 0.92548 0.90002 0.92835 0.82366 0.88956 0.87214 0.92534 0.86707 0.89602 0.90344 0.94527 0.94900 0.80588 0.93270 0.92343 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.46 71.98 0.61 -1.14 16 2 C 0.01 0.20 0.97 -52.93 -0.05 0.15 16 3 C -0.13 -1.56 8.04 71.98 0.58 -0.98 16 4 C -0.14 -1.70 8.20 71.98 0.59 -1.11 16 5 C 0.04 0.78 5.65 43.05 0.24 1.03 16 6 C -0.16 -3.72 10.20 22.66 0.23 -3.49 16 7 C -0.04 -0.88 6.47 40.78 0.26 -0.61 16 8 C 0.58 16.96 7.65 86.59 0.66 17.62 16 9 O -0.57 -22.33 16.42 -4.12 -0.07 -22.40 16 10 N -0.60 -14.17 2.97 -823.08 -2.45 -16.62 16 11 C 0.08 1.05 5.36 86.36 0.46 1.51 16 12 C -0.12 -1.59 6.08 30.67 0.19 -1.41 16 13 C -0.11 -1.87 5.17 30.62 0.16 -1.71 16 14 C -0.10 -2.78 2.38 -10.71 -0.03 -2.81 16 15 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.16 5.84 5.65 86.38 0.49 6.33 16 17 N -0.76 -36.85 5.18 -343.46 -1.78 -38.63 16 18 C -0.23 -13.40 10.47 84.04 0.88 -12.52 16 19 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 20 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 21 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 22 Si 0.94 49.17 27.73 68.60 1.90 51.08 16 23 H -0.28 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.27 -13.14 6.52 99.48 0.65 -12.49 16 25 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 26 C 0.12 3.54 5.53 86.36 0.48 4.02 16 27 N -0.37 -6.20 5.66 -48.00 -0.27 -6.47 16 28 H 0.46 4.75 6.37 -220.00 -1.40 3.35 16 29 N -0.27 -5.07 11.47 -47.50 -0.55 -5.61 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.66 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 36 H 0.06 0.75 7.59 -2.39 -0.02 0.73 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.16 3.63 7.78 -2.91 -0.02 3.61 16 40 H 0.09 0.98 4.20 -2.39 -0.01 0.97 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.36 17.60 4.75 -92.70 -0.44 17.16 16 49 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 50 H 0.06 2.22 6.20 -2.39 -0.01 2.21 16 51 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -79.33 397.51 2.35 -76.99 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.97 Total: 23.67 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.22 Total: 1.88 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -4.74 Total: -131.22 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.90 Total: 51.08 kcal Total: -79.33 2.35 -76.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266795626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.638 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds