Wall clock time and date at job start Tue Mar 31 2020 19:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46742 * 2 1 4 4 C 1.50691 * 109.47221 * 119.99924 * 2 1 3 5 5 C 1.35369 * 126.38665 * 324.69270 * 4 2 1 6 6 C 1.41507 * 105.50271 * 179.86306 * 5 4 2 7 7 C 1.47703 * 126.51704 * 180.12707 * 6 5 4 8 8 O 1.21566 * 120.00467 * 0.29651 * 7 6 5 9 9 N 1.34784 * 120.00097 * 180.30032 * 7 6 5 10 10 C 1.46494 * 120.00407 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47309 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47338 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.64165 * 305.70151 * 12 11 10 14 14 C 1.55154 * 110.72285 * 182.56253 * 12 11 10 15 15 C 1.54906 * 101.58191 * 206.13518 * 14 12 11 16 16 N 1.47427 * 104.83624 * 37.00899 * 15 14 12 17 17 C 1.36932 * 125.65184 * 155.90744 * 16 15 14 18 18 H 1.08004 * 120.00121 * 342.04559 * 17 16 15 19 19 C 1.38811 * 120.00177 * 162.04704 * 17 16 15 20 20 N 1.31619 * 120.00027 * 156.24387 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 336.25116 * 19 17 16 22 22 H 1.48496 * 109.47620 * 84.66932 * 21 19 17 23 23 H 1.48506 * 109.47238 * 204.67083 * 21 19 17 24 24 H 1.48504 * 109.47120 * 324.66687 * 21 19 17 25 25 C 1.47319 * 108.72972 * 335.71645 * 16 15 14 26 26 N 1.31813 * 106.96326 * 0.40077 * 6 5 4 27 27 N 1.28467 * 110.07254 * 359.74877 * 26 6 5 28 28 C 1.46500 * 124.88600 * 180.02562 * 27 26 6 29 29 H 1.08996 * 109.46884 * 299.99734 * 1 2 3 30 30 H 1.09000 * 109.46922 * 59.99652 * 1 2 3 31 31 H 1.08996 * 109.46574 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46884 * 240.00266 * 2 1 3 33 33 H 1.09005 * 109.47097 * 60.00238 * 3 2 1 34 34 H 1.09002 * 109.47123 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47697 * 299.99874 * 3 2 1 36 36 H 1.07998 * 127.24642 * 359.96114 * 5 4 2 37 37 H 0.97004 * 119.99637 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47312 * 300.00311 * 10 9 7 39 39 H 1.09008 * 109.46788 * 60.00040 * 10 9 7 40 40 H 1.08999 * 109.47650 * 300.00167 * 11 10 9 41 41 H 1.09001 * 109.47282 * 60.00416 * 11 10 9 42 42 H 1.08997 * 111.00608 * 324.20573 * 14 12 11 43 43 H 1.08998 * 111.00416 * 88.02133 * 14 12 11 44 44 H 1.09003 * 110.36898 * 155.84623 * 15 14 12 45 45 H 1.09004 * 110.37148 * 278.05910 * 15 14 12 46 46 H 0.97004 * 119.99791 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.06357 * 241.86738 * 25 16 15 48 48 H 1.08995 * 109.85112 * 120.61287 * 25 16 15 49 49 H 1.09000 * 109.47103 * 269.95798 * 28 27 26 50 50 H 1.09002 * 109.46776 * 29.95578 * 28 27 26 51 51 H 1.08995 * 109.47162 * 149.95461 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.4617 -0.6917 2.4577 6 6 2.2887 -1.5014 3.2718 7 6 2.0891 -1.8010 4.7043 8 8 1.1331 -1.3373 5.2949 9 7 2.9670 -2.5886 5.3568 10 6 2.7695 -2.8853 6.7777 11 6 3.8976 -3.7937 7.2707 12 6 3.6909 -4.1041 8.7545 13 1 3.5934 -3.1834 9.3298 14 6 4.8549 -4.9722 9.3011 15 6 4.1680 -5.7075 10.4789 16 7 2.7996 -5.9836 10.0050 17 6 1.9812 -6.9800 10.4659 18 1 2.3988 -7.8114 11.0146 19 6 0.6149 -6.9218 10.2280 20 7 -0.1013 -8.0261 10.2308 21 14 -0.2073 -5.2762 9.9035 22 1 -0.0791 -4.9339 8.4642 23 1 -1.6449 -5.3610 10.2660 24 1 0.4484 -4.2252 10.7225 25 6 2.4560 -5.0074 8.9565 26 7 3.2743 -1.9325 2.5102 27 7 3.1390 -1.4795 1.3156 28 6 4.0534 -1.7579 0.2054 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 0.5633 -0.1700 2.7530 37 1 3.7297 -2.9589 4.8855 38 1 2.7756 -1.9561 7.3472 39 1 1.8123 -3.3887 6.9140 40 1 3.8910 -4.7230 6.7011 41 1 4.8549 -3.2907 7.1343 42 1 5.2017 -5.6797 8.5480 43 1 5.6753 -4.3478 9.6547 44 1 4.6883 -6.6395 10.6995 45 1 4.1437 -5.0692 11.3622 46 1 -1.0561 -7.9853 10.0642 47 1 1.6037 -4.4052 9.2711 48 1 2.2220 -5.5283 8.0282 49 1 4.8359 -0.9994 0.1803 50 1 4.5043 -2.7406 0.3437 51 1 3.5005 -1.7407 -0.7337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267531427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:32 Heat of formation + Delta-G solvation = 56.716929 kcal Electronic energy + Delta-G solvation = -28532.142196 eV Core-core repulsion = 24661.699649 eV Total energy + Delta-G solvation = -3870.442547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.01220 -39.41712 -38.06826 -36.23777 -35.19361 -33.82609 -32.88508 -31.37182 -29.98442 -29.28019 -28.06804 -27.66638 -26.84429 -24.67915 -23.53973 -22.96508 -22.07476 -20.72035 -20.17010 -20.07881 -19.31587 -17.73230 -16.91877 -16.65796 -16.63697 -16.08885 -15.66189 -15.18045 -15.01710 -14.53767 -14.42937 -14.17975 -13.84782 -13.72167 -13.58803 -13.42273 -13.11111 -13.01417 -12.87595 -12.64056 -12.57744 -12.32165 -12.10423 -11.96997 -11.72416 -11.48841 -11.38257 -11.28411 -11.05483 -10.99915 -10.74451 -10.47202 -10.43044 -10.07073 -10.03340 -9.72920 -9.40919 -9.21907 -9.20467 -8.97184 -8.53356 -6.97576 -5.87650 -3.15421 1.39012 1.86151 2.11349 3.15631 3.39009 3.46278 3.58192 3.60486 3.95979 4.03989 4.29764 4.51311 4.60707 4.63036 4.63930 4.77856 4.88266 4.91800 5.00628 5.05130 5.07509 5.15483 5.24327 5.27707 5.32472 5.36870 5.47483 5.50434 5.52011 5.57236 5.59930 5.72058 5.80277 5.85582 5.88322 6.00839 6.13308 6.15615 6.22580 6.23414 6.41884 6.42958 6.48087 6.55977 6.69520 6.87571 6.88009 7.41745 7.71752 7.79894 8.22026 8.38523 8.91562 9.77519 10.27306 11.28832 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.002282 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.674981 B =12265.082824 C =13138.139520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.144 4.144 4 C 0.016 3.984 5 C -0.173 4.173 6 C -0.011 4.011 7 C 0.601 3.399 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.114 3.886 11 C -0.116 4.116 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.124 4.124 15 C 0.132 3.868 16 N -0.611 5.611 17 C -0.242 4.242 18 H 0.092 0.908 19 C 0.020 3.980 20 N -0.908 5.908 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.304 1.304 24 H -0.280 1.280 25 C 0.123 3.877 26 N -0.263 5.263 27 N -0.282 5.282 28 C 0.085 3.915 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.161 0.839 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.023 0.977 46 H 0.262 0.738 47 H 0.025 0.975 48 H 0.041 0.959 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.494 18.473 -25.594 33.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.171 4.171 7 C 0.385 3.615 8 O -0.405 6.405 9 N -0.367 5.367 10 C -0.009 4.009 11 C -0.155 4.155 12 C -0.118 4.118 13 H 0.095 0.905 14 C -0.163 4.163 15 C 0.006 3.994 16 N -0.338 5.338 17 C -0.369 4.369 18 H 0.109 0.891 19 C -0.178 4.178 20 N -0.552 5.552 21 Si 0.718 3.282 22 H -0.212 1.212 23 H -0.233 1.233 24 H -0.207 1.207 25 C -0.002 4.002 26 N -0.098 5.098 27 N -0.069 5.069 28 C -0.056 4.056 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.059 0.941 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.645 17.942 -25.177 32.697 hybrid contribution -0.906 1.143 -0.413 1.516 sum 9.738 19.085 -25.589 33.375 Atomic orbital electron populations 1.21840 0.92906 1.02747 1.02738 1.19678 0.96902 0.95409 0.92333 1.21855 1.00992 0.94552 1.02800 1.21365 0.90983 1.00313 0.98161 1.21470 1.03051 1.04494 0.91036 1.21903 0.96003 1.03981 0.95224 1.16894 0.82411 0.78662 0.83579 1.90816 1.30127 1.52370 1.67228 1.45876 1.28444 1.50567 1.11794 1.21553 1.00173 0.99634 0.79548 1.21770 0.97522 0.99665 0.96500 1.22110 0.96826 0.98699 0.94179 0.90519 1.22774 0.96301 0.98289 0.98909 1.21604 0.86478 0.97226 0.94064 1.44881 1.13134 1.35314 1.40493 1.18655 0.87780 0.97476 1.32973 0.89057 1.24949 0.96035 0.96780 1.00040 1.69863 1.07169 1.25802 1.52412 0.86931 0.77398 0.85805 0.78070 1.21156 1.23280 1.20650 1.21794 0.94529 0.90945 0.92913 1.73514 1.23782 1.20943 0.91593 1.45281 1.19317 1.34601 1.07746 1.22161 0.92931 1.04363 0.86119 0.91622 0.91704 0.92068 0.90199 0.91761 0.92752 0.91631 0.82157 0.76011 0.91180 0.90710 0.90785 0.91257 0.91264 0.91628 0.93430 0.95941 0.92783 0.95719 0.94113 0.89701 0.88352 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.79 37.16 0.33 -0.46 16 2 C -0.02 -0.13 3.10 -91.77 -0.28 -0.41 16 3 C -0.14 -0.68 9.18 37.16 0.34 -0.34 16 4 C 0.02 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.02 9.96 -39.36 -0.39 -2.42 16 6 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 7 C 0.60 9.54 7.82 -12.39 -0.10 9.44 16 8 O -0.53 -10.24 16.93 5.31 0.09 -10.15 16 9 N -0.72 -9.99 5.55 -61.30 -0.34 -10.33 16 10 C 0.11 1.73 5.54 -4.05 -0.02 1.71 16 11 C -0.12 -1.59 4.72 -26.74 -0.13 -1.72 16 12 C -0.10 -1.65 2.95 -88.79 -0.26 -1.91 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.12 -1.96 6.54 -24.59 -0.16 -2.12 16 15 C 0.13 2.65 7.23 -2.53 -0.02 2.63 16 16 N -0.61 -15.38 3.22 -169.83 -0.55 -15.93 16 17 C -0.24 -7.13 10.56 -15.06 -0.16 -7.29 16 18 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 19 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 20 N -0.91 -29.04 13.97 55.49 0.78 -28.26 16 21 Si 0.89 24.18 24.38 -169.99 -4.15 20.03 16 22 H -0.28 -7.58 6.83 56.52 0.39 -7.20 16 23 H -0.30 -8.38 7.11 56.52 0.40 -7.97 16 24 H -0.28 -7.54 6.87 56.52 0.39 -7.15 16 25 C 0.12 2.78 4.01 -2.90 -0.01 2.76 16 26 N -0.26 -3.11 11.67 33.42 0.39 -2.72 16 27 N -0.28 -2.52 3.70 -63.85 -0.24 -2.76 16 28 C 0.08 0.35 11.11 59.85 0.66 1.01 16 29 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.30 6.86 -51.93 -0.36 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.16 1.79 7.48 -52.49 -0.39 1.40 16 37 H 0.41 4.74 8.20 -40.82 -0.33 4.40 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.35 7.58 -51.92 -0.39 0.96 16 40 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 47 H 0.03 0.62 3.55 -51.93 -0.18 0.44 16 48 H 0.04 0.97 7.73 -51.93 -0.40 0.56 16 49 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.09 0.17 6.88 -51.93 -0.36 -0.19 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -37.36 404.02 -8.01 -45.37 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.72 Total: -1.67 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.37 Total: 0.33 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.04 Total: -60.00 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.15 Total: 20.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.36 -8.01 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267531427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.083 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds