Wall clock time and date at job start Tue Mar 31 2020 19:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46742 * 2 1 4 4 C 1.50691 * 109.47221 * 119.99924 * 2 1 3 5 5 C 1.35369 * 126.38665 * 324.69270 * 4 2 1 6 6 C 1.41507 * 105.50271 * 179.86306 * 5 4 2 7 7 C 1.47703 * 126.51704 * 180.12707 * 6 5 4 8 8 O 1.21566 * 120.00467 * 0.29651 * 7 6 5 9 9 N 1.34784 * 120.00097 * 180.30032 * 7 6 5 10 10 C 1.46494 * 120.00407 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47309 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47338 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.64165 * 305.70151 * 12 11 10 14 14 C 1.55154 * 110.72285 * 182.56253 * 12 11 10 15 15 C 1.54906 * 101.58191 * 206.13518 * 14 12 11 16 16 N 1.47427 * 104.83624 * 37.00899 * 15 14 12 17 17 C 1.36932 * 125.65184 * 155.90744 * 16 15 14 18 18 H 1.08004 * 120.00121 * 342.04559 * 17 16 15 19 19 C 1.38811 * 120.00177 * 162.04704 * 17 16 15 20 20 N 1.31619 * 120.00027 * 156.24387 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 336.25116 * 19 17 16 22 22 H 1.48496 * 109.47620 * 84.66932 * 21 19 17 23 23 H 1.48506 * 109.47238 * 204.67083 * 21 19 17 24 24 H 1.48504 * 109.47120 * 324.66687 * 21 19 17 25 25 C 1.47319 * 108.72972 * 335.71645 * 16 15 14 26 26 N 1.31813 * 106.96326 * 0.40077 * 6 5 4 27 27 N 1.28467 * 110.07254 * 359.74877 * 26 6 5 28 28 C 1.46500 * 124.88600 * 180.02562 * 27 26 6 29 29 H 1.08996 * 109.46884 * 299.99734 * 1 2 3 30 30 H 1.09000 * 109.46922 * 59.99652 * 1 2 3 31 31 H 1.08996 * 109.46574 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46884 * 240.00266 * 2 1 3 33 33 H 1.09005 * 109.47097 * 60.00238 * 3 2 1 34 34 H 1.09002 * 109.47123 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47697 * 299.99874 * 3 2 1 36 36 H 1.07998 * 127.24642 * 359.96114 * 5 4 2 37 37 H 0.97004 * 119.99637 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47312 * 300.00311 * 10 9 7 39 39 H 1.09008 * 109.46788 * 60.00040 * 10 9 7 40 40 H 1.08999 * 109.47650 * 300.00167 * 11 10 9 41 41 H 1.09001 * 109.47282 * 60.00416 * 11 10 9 42 42 H 1.08997 * 111.00608 * 324.20573 * 14 12 11 43 43 H 1.08998 * 111.00416 * 88.02133 * 14 12 11 44 44 H 1.09003 * 110.36898 * 155.84623 * 15 14 12 45 45 H 1.09004 * 110.37148 * 278.05910 * 15 14 12 46 46 H 0.97004 * 119.99791 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.06357 * 241.86738 * 25 16 15 48 48 H 1.08995 * 109.85112 * 120.61287 * 25 16 15 49 49 H 1.09000 * 109.47103 * 269.95798 * 28 27 26 50 50 H 1.09002 * 109.46776 * 29.95578 * 28 27 26 51 51 H 1.08995 * 109.47162 * 149.95461 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.4617 -0.6917 2.4577 6 6 2.2887 -1.5014 3.2718 7 6 2.0891 -1.8010 4.7043 8 8 1.1331 -1.3373 5.2949 9 7 2.9670 -2.5886 5.3568 10 6 2.7695 -2.8853 6.7777 11 6 3.8976 -3.7937 7.2707 12 6 3.6909 -4.1041 8.7545 13 1 3.5934 -3.1834 9.3298 14 6 4.8549 -4.9722 9.3011 15 6 4.1680 -5.7075 10.4789 16 7 2.7996 -5.9836 10.0050 17 6 1.9812 -6.9800 10.4659 18 1 2.3988 -7.8114 11.0146 19 6 0.6149 -6.9218 10.2280 20 7 -0.1013 -8.0261 10.2308 21 14 -0.2073 -5.2762 9.9035 22 1 -0.0791 -4.9339 8.4642 23 1 -1.6449 -5.3610 10.2660 24 1 0.4484 -4.2252 10.7225 25 6 2.4560 -5.0074 8.9565 26 7 3.2743 -1.9325 2.5102 27 7 3.1390 -1.4795 1.3156 28 6 4.0534 -1.7579 0.2054 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 0.5633 -0.1700 2.7530 37 1 3.7297 -2.9589 4.8855 38 1 2.7756 -1.9561 7.3472 39 1 1.8123 -3.3887 6.9140 40 1 3.8910 -4.7230 6.7011 41 1 4.8549 -3.2907 7.1343 42 1 5.2017 -5.6797 8.5480 43 1 5.6753 -4.3478 9.6547 44 1 4.6883 -6.6395 10.6995 45 1 4.1437 -5.0692 11.3622 46 1 -1.0561 -7.9853 10.0642 47 1 1.6037 -4.4052 9.2711 48 1 2.2220 -5.5283 8.0282 49 1 4.8359 -0.9994 0.1803 50 1 4.5043 -2.7406 0.3437 51 1 3.5005 -1.7407 -0.7337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267531427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:30 Heat of formation + Delta-G solvation = 29.795825 kcal Electronic energy + Delta-G solvation = -28533.309582 eV Core-core repulsion = 24661.699649 eV Total energy + Delta-G solvation = -3871.609934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.79135 -40.65075 -39.63344 -36.74971 -36.55124 -34.84376 -34.47133 -33.09240 -31.02759 -30.62262 -29.13259 -28.05748 -28.01643 -26.41303 -24.68248 -23.71012 -23.30499 -21.88572 -21.72393 -21.18778 -20.32761 -19.02557 -18.47727 -17.79731 -17.55792 -17.38704 -16.85965 -16.59125 -16.11135 -15.57675 -15.45810 -15.26559 -15.13128 -14.81252 -14.76213 -14.59461 -14.21060 -13.99946 -13.96349 -13.64475 -13.52675 -13.42104 -13.19407 -13.02324 -12.94111 -12.75734 -12.63182 -12.41583 -12.18991 -12.13555 -11.88758 -11.82539 -11.79845 -11.79127 -11.46933 -11.29512 -11.17232 -10.78492 -10.37717 -10.02474 -9.97620 -9.08871 -8.24051 -5.46019 0.43651 1.05258 1.25197 1.30894 1.39604 1.49891 2.07904 2.27555 2.35086 2.98602 3.23573 3.35333 3.47286 3.61853 3.80977 3.81994 3.97830 4.01822 4.15697 4.18533 4.23403 4.31285 4.38832 4.45193 4.48223 4.53940 4.58254 4.59489 4.66158 4.69636 4.73192 4.80646 4.84441 4.96787 4.98027 4.98288 5.02661 5.11664 5.13043 5.18439 5.24604 5.27149 5.32033 5.36090 5.40693 5.50151 5.67030 5.80652 6.05982 6.35829 6.74442 6.84133 7.07866 7.51972 8.09817 8.96365 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.002282 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.674981 B =12265.082824 C =13138.139520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C -0.142 4.142 4 C 0.032 3.968 5 C -0.200 4.200 6 C -0.043 4.043 7 C 0.596 3.404 8 O -0.578 6.578 9 N -0.703 5.703 10 C 0.116 3.884 11 C -0.102 4.102 12 C -0.089 4.089 13 H 0.090 0.910 14 C -0.105 4.105 15 C 0.119 3.881 16 N -0.632 5.632 17 C -0.230 4.230 18 H 0.066 0.934 19 C -0.035 4.035 20 N -0.952 5.952 21 Si 0.945 3.055 22 H -0.284 1.284 23 H -0.309 1.309 24 H -0.275 1.275 25 C 0.115 3.885 26 N -0.268 5.268 27 N -0.272 5.272 28 C 0.070 3.930 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.418 0.582 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.047 0.953 45 H 0.030 0.970 46 H 0.262 0.738 47 H 0.004 0.996 48 H 0.022 0.978 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 20.683 -28.583 37.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.093 4.093 5 C -0.228 4.228 6 C -0.201 4.201 7 C 0.381 3.619 8 O -0.456 6.456 9 N -0.354 5.354 10 C -0.007 4.007 11 C -0.140 4.140 12 C -0.108 4.108 13 H 0.108 0.892 14 C -0.143 4.143 15 C -0.005 4.005 16 N -0.359 5.359 17 C -0.359 4.359 18 H 0.083 0.917 19 C -0.230 4.230 20 N -0.600 5.600 21 Si 0.776 3.224 22 H -0.211 1.211 23 H -0.238 1.238 24 H -0.201 1.201 25 C -0.009 4.009 26 N -0.105 5.105 27 N -0.061 5.061 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.255 0.745 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.021 0.979 48 H 0.040 0.960 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.841 20.163 -28.181 37.314 hybrid contribution -1.764 0.410 0.442 1.864 sum 12.077 20.573 -27.739 36.586 Atomic orbital electron populations 1.21859 0.93087 1.02253 1.03177 1.19854 0.96701 0.95834 0.91564 1.21843 1.01274 0.93789 1.03035 1.21804 0.90129 0.99094 0.98302 1.21587 1.03499 1.05376 0.92365 1.21651 0.97827 1.06141 0.94481 1.17291 0.81831 0.78124 0.84607 1.90773 1.31997 1.54295 1.68513 1.45744 1.28455 1.49879 1.11365 1.21445 0.99225 0.99694 0.80367 1.21683 0.98580 0.99659 0.94081 1.22101 0.94148 0.98012 0.96588 0.89179 1.22739 0.96438 0.98193 0.96966 1.21918 0.84106 0.98111 0.96357 1.45091 1.14538 1.34870 1.41354 1.18680 0.88328 0.97819 1.31055 0.91652 1.25497 0.96855 0.99166 1.01489 1.69961 1.07335 1.27455 1.55217 0.85977 0.76047 0.82406 0.77941 1.21073 1.23795 1.20113 1.21906 0.96968 0.90939 0.91110 1.73438 1.23231 1.21193 0.92676 1.45799 1.19518 1.33084 1.07697 1.22673 0.93197 1.05462 0.85482 0.92916 0.89592 0.93040 0.87306 0.93363 0.92263 0.89615 0.82930 0.74501 0.91020 0.94484 0.90798 0.87014 0.90345 0.87160 0.93438 0.95164 0.92929 0.97893 0.95978 0.87653 0.87723 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.79 71.98 0.63 -0.72 16 2 C -0.02 -0.16 3.10 -11.54 -0.04 -0.20 16 3 C -0.14 -0.95 9.18 71.98 0.66 -0.29 16 4 C 0.03 0.52 5.84 41.40 0.24 0.76 16 5 C -0.20 -4.79 9.96 22.41 0.22 -4.56 16 6 C -0.04 -1.19 7.13 42.46 0.30 -0.88 16 7 C 0.60 19.48 7.82 86.74 0.68 20.16 16 8 O -0.58 -23.48 16.93 -3.92 -0.07 -23.54 16 9 N -0.70 -19.33 5.55 -466.13 -2.59 -21.92 16 10 C 0.12 3.45 5.54 86.38 0.48 3.93 16 11 C -0.10 -2.49 4.72 30.59 0.14 -2.34 16 12 C -0.09 -2.73 2.95 -9.61 -0.03 -2.76 16 13 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 14 C -0.11 -2.88 6.54 31.98 0.21 -2.67 16 15 C 0.12 4.56 7.23 86.85 0.63 5.18 16 16 N -0.63 -31.72 3.22 -691.23 -2.22 -33.94 16 17 C -0.23 -13.90 10.56 84.03 0.89 -13.02 16 18 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 19 C -0.04 -2.22 5.43 84.86 0.46 -1.76 16 20 N -0.95 -63.11 13.97 21.65 0.30 -62.81 16 21 Si 0.94 52.02 24.38 68.60 1.67 53.70 16 22 H -0.28 -15.35 6.83 99.48 0.68 -14.67 16 23 H -0.31 -17.04 7.11 99.48 0.71 -16.34 16 24 H -0.27 -14.67 6.87 99.48 0.68 -13.99 16 25 C 0.12 5.16 4.01 86.67 0.35 5.51 16 26 N -0.27 -6.02 11.67 -48.18 -0.56 -6.58 16 27 N -0.27 -4.26 3.70 -355.93 -1.32 -5.57 16 28 C 0.07 0.31 11.11 127.77 1.42 1.73 16 29 H 0.05 0.62 7.36 -2.39 -0.02 0.61 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.32 6.86 -2.39 -0.02 0.30 16 33 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.15 3.71 7.48 -2.91 -0.02 3.68 16 37 H 0.42 9.16 8.20 -92.71 -0.76 8.40 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.38 7.58 -2.38 -0.02 1.36 16 40 H 0.07 1.85 8.00 -2.39 -0.02 1.83 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16 47 H 0.00 0.18 3.55 -2.39 -0.01 0.17 16 48 H 0.02 1.06 7.73 -2.39 -0.02 1.04 16 49 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.12 -0.16 6.88 -2.39 -0.02 -0.18 16 Total: -1.00 -86.97 404.02 2.58 -84.40 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.11 Total: 8.21 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.25 Total: 8.07 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -6.39 Total: -130.83 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 1.67 Total: 53.70 kcal Total: -86.97 2.58 -84.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267531427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.192 kcal (2) G-P(sol) polarization free energy of solvation -86.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds