Wall clock time and date at job start Tue Mar 31 2020 19:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.50701 * 109.47195 * 120.00007 * 2 1 3 5 5 C 1.35367 * 126.38659 * 324.97446 * 4 2 1 6 6 C 1.41504 * 105.50330 * 180.28602 * 5 4 2 7 7 C 1.47705 * 126.51490 * 179.70452 * 6 5 4 8 8 O 1.21564 * 120.00576 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99706 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00007 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47307 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.64679 * 56.68213 * 12 11 10 14 14 C 1.55159 * 110.72072 * 180.02562 * 12 11 10 15 15 C 1.54911 * 101.58330 * 153.86190 * 14 12 11 16 16 N 1.47424 * 104.82969 * 322.99270 * 15 14 12 17 17 C 1.36944 * 125.64470 * 204.09197 * 16 15 14 18 18 H 1.07999 * 119.99724 * 180.02562 * 17 16 15 19 19 C 1.38804 * 120.00046 * 0.03935 * 17 16 15 20 20 N 1.31615 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46982 * 60.00087 * 21 19 17 23 23 H 1.48498 * 109.46860 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47291 * 300.00262 * 21 19 17 25 25 C 1.47025 * 108.70734 * 24.12607 * 16 15 14 26 26 N 1.31811 * 106.96249 * 359.56884 * 6 5 4 27 27 N 1.28472 * 110.07116 * 0.44760 * 26 6 5 28 28 C 1.46500 * 124.88137 * 179.69204 * 27 26 6 29 29 H 1.09005 * 109.46647 * 299.99871 * 1 2 3 30 30 H 1.08996 * 109.47527 * 59.99978 * 1 2 3 31 31 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47189 * 240.00027 * 2 1 3 33 33 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47449 * 299.99623 * 3 2 1 35 35 H 1.09000 * 109.47565 * 60.00160 * 3 2 1 36 36 H 1.08002 * 127.24456 * 0.02562 * 5 4 2 37 37 H 0.97003 * 120.00212 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.46817 * 299.99967 * 10 9 7 39 39 H 1.09002 * 109.47133 * 60.00013 * 10 9 7 40 40 H 1.09007 * 109.46482 * 299.99959 * 11 10 9 41 41 H 1.09002 * 109.47320 * 59.99752 * 11 10 9 42 42 H 1.08996 * 111.00697 * 271.93691 * 14 12 11 43 43 H 1.08996 * 111.00420 * 35.79017 * 14 12 11 44 44 H 1.08998 * 110.37190 * 204.15350 * 15 14 12 45 45 H 1.08999 * 110.45776 * 81.87544 * 15 14 12 46 46 H 0.96998 * 120.00019 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.87970 * 239.52464 * 25 16 15 48 48 H 1.09004 * 110.01082 * 118.43119 * 25 16 15 49 49 H 1.09006 * 109.47113 * 270.02231 * 28 27 26 50 50 H 1.09001 * 109.47120 * 30.02577 * 28 27 26 51 51 H 1.08995 * 109.47226 * 150.02476 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4587 -0.6960 2.4565 6 6 2.2925 -1.4957 3.2736 7 6 2.0976 -1.7882 4.7082 8 8 1.1429 -1.3225 5.2994 9 7 2.9782 -2.5717 5.3619 10 6 2.7853 -2.8614 6.7849 11 6 3.9164 -3.7652 7.2794 12 6 3.7146 -4.0683 8.7653 13 1 2.7376 -4.5204 8.9361 14 6 4.8482 -4.9842 9.2977 15 6 4.8680 -4.6126 10.8015 16 7 4.6008 -3.1632 10.8355 17 6 4.9642 -2.3081 11.8416 18 1 4.7205 -1.2582 11.7722 19 6 5.6459 -2.7906 12.9502 20 7 5.9436 -4.0699 13.0343 21 14 6.1422 -1.6240 14.3222 22 1 4.9282 -0.9895 14.8957 23 1 6.8535 -2.3817 15.3830 24 1 7.0398 -0.5735 13.7783 25 6 3.8789 -2.7879 9.6109 26 7 3.2745 -1.9321 2.5104 27 7 3.1389 -1.4795 1.3157 28 6 4.0536 -1.7575 0.2056 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.5570 -0.1792 2.7502 37 1 3.7402 -2.9431 4.8903 38 1 2.7923 -1.9291 7.3497 39 1 1.8290 -3.3650 6.9268 40 1 3.9097 -4.6975 6.7145 41 1 4.8725 -3.2613 7.1375 42 1 4.5987 -6.0360 9.1585 43 1 5.7998 -4.7440 8.8234 44 1 5.8454 -4.8283 11.2328 45 1 4.0893 -5.1546 11.3381 46 1 6.4196 -4.4072 13.8092 47 1 4.4531 -2.0472 9.0544 48 1 2.8991 -2.3830 9.8647 49 1 4.8362 -0.9992 0.1810 50 1 4.5042 -2.7404 0.3436 51 1 3.5010 -1.7399 -0.7337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267531428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:39 Heat of formation + Delta-G solvation = 50.248716 kcal Electronic energy + Delta-G solvation = -28094.981588 eV Core-core repulsion = 24224.258558 eV Total energy + Delta-G solvation = -3870.723030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.01898 -39.39653 -37.72389 -36.24725 -35.11820 -33.83055 -32.93180 -30.84076 -29.94599 -28.99378 -27.91242 -27.67645 -26.37889 -24.77414 -23.49340 -22.92522 -21.95393 -20.69845 -20.04883 -19.80520 -19.05185 -17.72421 -16.81771 -16.66582 -16.64232 -15.67305 -15.57663 -15.04093 -14.83683 -14.55669 -14.47218 -14.19134 -13.80111 -13.67033 -13.57367 -13.49962 -13.08451 -12.95933 -12.64689 -12.45385 -12.19372 -12.10695 -11.83975 -11.73458 -11.62369 -11.51887 -11.39197 -11.05075 -10.98176 -10.84950 -10.68637 -10.25922 -10.10652 -9.92285 -9.82394 -9.68044 -9.41503 -9.39444 -9.21407 -8.95791 -8.57352 -6.74265 -5.57750 -2.98849 1.38648 1.85335 2.10858 3.17621 3.38556 3.45660 3.49296 3.50979 3.95452 4.03224 4.28806 4.50814 4.55846 4.60876 4.62578 4.77475 4.91094 5.00608 5.08064 5.14848 5.19983 5.23566 5.30091 5.35140 5.39996 5.49374 5.55049 5.55928 5.68399 5.71414 5.72973 5.83912 5.86705 5.97566 6.10381 6.14829 6.28139 6.31799 6.42612 6.46687 6.51604 6.68577 6.72556 6.85969 7.07044 7.42397 7.60598 7.70852 7.71824 7.93555 8.21931 8.44696 9.30381 9.91562 10.57332 11.46084 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.001794 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.736631 B =15600.104646 C =15960.529790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.016 3.984 5 C -0.173 4.173 6 C -0.012 4.012 7 C 0.601 3.399 8 O -0.533 6.533 9 N -0.716 5.716 10 C 0.117 3.883 11 C -0.116 4.116 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.138 4.138 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.014 4.014 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.139 3.861 26 N -0.263 5.263 27 N -0.282 5.282 28 C 0.084 3.916 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.161 0.839 37 H 0.405 0.595 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.251 0.749 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 4.177 -32.917 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.172 4.172 7 C 0.385 3.615 8 O -0.408 6.408 9 N -0.367 5.367 10 C -0.006 4.006 11 C -0.154 4.154 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.177 4.177 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.209 4.209 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.013 3.987 26 N -0.098 5.098 27 N -0.069 5.069 28 C -0.056 4.056 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.038 0.962 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.860 3.812 -32.312 33.060 hybrid contribution -0.020 0.830 0.440 0.939 sum -5.880 4.642 -31.872 32.740 Atomic orbital electron populations 1.21835 0.92943 1.02643 1.02757 1.19677 0.96865 0.95457 0.92332 1.21858 1.01065 0.94513 1.02821 1.21364 0.90849 1.00386 0.98237 1.21463 1.02948 1.04683 0.90988 1.21929 0.95935 1.04129 0.95193 1.16883 0.82483 0.78588 0.83556 1.90805 1.30534 1.52110 1.67306 1.45929 1.28297 1.50699 1.11744 1.21556 0.99388 1.00351 0.79278 1.21784 0.98011 0.98910 0.96703 1.22092 0.99554 0.97855 0.92171 0.90922 1.23036 0.96969 0.97305 1.00394 1.21920 1.02713 0.83553 0.89199 1.44517 1.65321 1.04855 1.18434 1.19056 1.29434 0.90280 0.96048 0.90605 1.24782 1.01304 0.96280 0.98530 1.69795 1.45932 1.11708 1.29857 0.86153 0.78220 0.79583 0.81562 1.21245 1.21616 1.21230 1.21370 0.94958 0.93999 0.88354 1.73525 1.23766 1.21012 0.91517 1.45281 1.19319 1.34560 1.07777 1.22163 0.92950 1.04400 0.86084 0.91613 0.91712 0.92140 0.90237 0.92711 0.91643 0.91711 0.82170 0.76041 0.90723 0.91284 0.91627 0.91162 0.92520 0.92210 0.87730 0.97158 0.93795 0.95954 0.96212 0.89650 0.88369 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.78 37.16 0.33 -0.36 16 2 C -0.02 -0.12 3.10 -91.77 -0.28 -0.40 16 3 C -0.14 -0.67 9.18 37.16 0.34 -0.33 16 4 C 0.02 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -1.92 9.96 -39.36 -0.39 -2.31 16 6 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 7 C 0.60 9.01 7.82 -12.39 -0.10 8.92 16 8 O -0.53 -9.65 16.93 5.31 0.09 -9.56 16 9 N -0.72 -9.49 5.55 -61.29 -0.34 -9.83 16 10 C 0.12 1.66 5.52 -4.04 -0.02 1.64 16 11 C -0.12 -1.61 4.71 -26.74 -0.13 -1.74 16 12 C -0.10 -1.71 2.98 -88.79 -0.26 -1.97 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.14 -2.65 6.53 -24.58 -0.16 -2.81 16 15 C 0.15 3.78 5.89 -2.53 -0.01 3.76 16 16 N -0.61 -16.14 3.39 -170.07 -0.58 -16.72 16 17 C -0.22 -6.36 10.27 -15.06 -0.15 -6.51 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.40 5.49 -17.44 -0.10 -0.50 16 20 N -0.92 -27.62 10.09 55.49 0.56 -27.06 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.14 3.03 5.99 -3.06 -0.02 3.01 16 26 N -0.26 -3.00 11.67 33.42 0.39 -2.61 16 27 N -0.28 -2.41 3.70 -63.85 -0.24 -2.65 16 28 C 0.08 0.32 11.11 59.85 0.66 0.99 16 29 H 0.06 0.35 7.35 -51.93 -0.38 -0.03 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.26 6.86 -51.93 -0.36 -0.09 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.16 1.68 7.47 -52.49 -0.39 1.28 16 37 H 0.40 4.62 8.20 -40.82 -0.33 4.28 16 38 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.99 8.06 -51.93 -0.42 0.58 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.12 8.05 -51.93 -0.42 0.71 16 44 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.02 0.49 7.76 -51.93 -0.40 0.08 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.09 0.13 6.88 -51.93 -0.36 -0.23 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -35.39 408.48 -9.15 -44.53 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.80 Total: -0.23 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.37 Total: 0.29 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.20 Total: -58.87 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.39 -9.15 -44.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267531428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.783 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds