Wall clock time and date at job start Tue Mar 31 2020 19:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.50701 * 109.47195 * 120.00007 * 2 1 3 5 5 C 1.35367 * 126.38659 * 324.97446 * 4 2 1 6 6 C 1.41504 * 105.50330 * 180.28602 * 5 4 2 7 7 C 1.47705 * 126.51490 * 179.70452 * 6 5 4 8 8 O 1.21564 * 120.00576 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99706 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00007 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47307 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.64679 * 56.68213 * 12 11 10 14 14 C 1.55159 * 110.72072 * 180.02562 * 12 11 10 15 15 C 1.54911 * 101.58330 * 153.86190 * 14 12 11 16 16 N 1.47424 * 104.82969 * 322.99270 * 15 14 12 17 17 C 1.36944 * 125.64470 * 204.09197 * 16 15 14 18 18 H 1.07999 * 119.99724 * 180.02562 * 17 16 15 19 19 C 1.38804 * 120.00046 * 0.03935 * 17 16 15 20 20 N 1.31615 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46982 * 60.00087 * 21 19 17 23 23 H 1.48498 * 109.46860 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47291 * 300.00262 * 21 19 17 25 25 C 1.47025 * 108.70734 * 24.12607 * 16 15 14 26 26 N 1.31811 * 106.96249 * 359.56884 * 6 5 4 27 27 N 1.28472 * 110.07116 * 0.44760 * 26 6 5 28 28 C 1.46500 * 124.88137 * 179.69204 * 27 26 6 29 29 H 1.09005 * 109.46647 * 299.99871 * 1 2 3 30 30 H 1.08996 * 109.47527 * 59.99978 * 1 2 3 31 31 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47189 * 240.00027 * 2 1 3 33 33 H 1.09003 * 109.46862 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47449 * 299.99623 * 3 2 1 35 35 H 1.09000 * 109.47565 * 60.00160 * 3 2 1 36 36 H 1.08002 * 127.24456 * 0.02562 * 5 4 2 37 37 H 0.97003 * 120.00212 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.46817 * 299.99967 * 10 9 7 39 39 H 1.09002 * 109.47133 * 60.00013 * 10 9 7 40 40 H 1.09007 * 109.46482 * 299.99959 * 11 10 9 41 41 H 1.09002 * 109.47320 * 59.99752 * 11 10 9 42 42 H 1.08996 * 111.00697 * 271.93691 * 14 12 11 43 43 H 1.08996 * 111.00420 * 35.79017 * 14 12 11 44 44 H 1.08998 * 110.37190 * 204.15350 * 15 14 12 45 45 H 1.08999 * 110.45776 * 81.87544 * 15 14 12 46 46 H 0.96998 * 120.00019 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.87970 * 239.52464 * 25 16 15 48 48 H 1.09004 * 110.01082 * 118.43119 * 25 16 15 49 49 H 1.09006 * 109.47113 * 270.02231 * 28 27 26 50 50 H 1.09001 * 109.47120 * 30.02577 * 28 27 26 51 51 H 1.08995 * 109.47226 * 150.02476 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4587 -0.6960 2.4565 6 6 2.2925 -1.4957 3.2736 7 6 2.0976 -1.7882 4.7082 8 8 1.1429 -1.3225 5.2994 9 7 2.9782 -2.5717 5.3619 10 6 2.7853 -2.8614 6.7849 11 6 3.9164 -3.7652 7.2794 12 6 3.7146 -4.0683 8.7653 13 1 2.7376 -4.5204 8.9361 14 6 4.8482 -4.9842 9.2977 15 6 4.8680 -4.6126 10.8015 16 7 4.6008 -3.1632 10.8355 17 6 4.9642 -2.3081 11.8416 18 1 4.7205 -1.2582 11.7722 19 6 5.6459 -2.7906 12.9502 20 7 5.9436 -4.0699 13.0343 21 14 6.1422 -1.6240 14.3222 22 1 4.9282 -0.9895 14.8957 23 1 6.8535 -2.3817 15.3830 24 1 7.0398 -0.5735 13.7783 25 6 3.8789 -2.7879 9.6109 26 7 3.2745 -1.9321 2.5104 27 7 3.1389 -1.4795 1.3157 28 6 4.0536 -1.7575 0.2056 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.5570 -0.1792 2.7502 37 1 3.7402 -2.9431 4.8903 38 1 2.7923 -1.9291 7.3497 39 1 1.8290 -3.3650 6.9268 40 1 3.9097 -4.6975 6.7145 41 1 4.8725 -3.2613 7.1375 42 1 4.5987 -6.0360 9.1585 43 1 5.7998 -4.7440 8.8234 44 1 5.8454 -4.8283 11.2328 45 1 4.0893 -5.1546 11.3381 46 1 6.4196 -4.4072 13.8092 47 1 4.4531 -2.0472 9.0544 48 1 2.8991 -2.3830 9.8647 49 1 4.8362 -0.9992 0.1810 50 1 4.5042 -2.7404 0.3436 51 1 3.5010 -1.7399 -0.7337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267531428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:37 Heat of formation + Delta-G solvation = 26.987467 kcal Electronic energy + Delta-G solvation = -28095.990271 eV Core-core repulsion = 24224.258558 eV Total energy + Delta-G solvation = -3871.731713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.75716 -40.57249 -39.38600 -36.72119 -36.48700 -34.80615 -34.41669 -32.50673 -30.86201 -30.54782 -28.84150 -28.02660 -27.79519 -26.53366 -24.54086 -23.63753 -23.18367 -21.91609 -21.56984 -20.94163 -20.21913 -18.89308 -18.41942 -17.53460 -17.37435 -17.04610 -16.80060 -16.58050 -16.10618 -15.59177 -15.51159 -15.18371 -14.87318 -14.73767 -14.57703 -14.26904 -13.97844 -13.81302 -13.59023 -13.48326 -13.40019 -13.34320 -13.11967 -12.99897 -12.82476 -12.68140 -12.60357 -12.25074 -12.11407 -12.03440 -11.78651 -11.78223 -11.76930 -11.64696 -11.44567 -11.30900 -11.13345 -10.73449 -10.31528 -9.97794 -9.94237 -8.87458 -7.77165 -5.21587 0.48296 1.08849 1.44672 1.48464 1.53200 1.54920 2.14046 2.32811 2.49508 3.28235 3.31410 3.49951 3.72725 3.74782 3.85334 3.93533 4.04432 4.17027 4.18578 4.30400 4.34087 4.34911 4.41396 4.48201 4.60483 4.63204 4.67371 4.70550 4.72878 4.74228 4.82656 4.88375 4.98113 5.01004 5.02024 5.10385 5.15140 5.18126 5.25203 5.29203 5.37282 5.38936 5.43330 5.43591 5.51416 5.69597 5.83537 5.83981 6.32714 6.41208 6.87882 7.11852 7.13092 7.79805 8.43884 9.24247 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.001794 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.736631 B =15600.104646 C =15960.529790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.199 4.199 6 C -0.043 4.043 7 C 0.598 3.402 8 O -0.575 6.575 9 N -0.704 5.704 10 C 0.123 3.877 11 C -0.099 4.099 12 C -0.083 4.083 13 H 0.081 0.919 14 C -0.121 4.121 15 C 0.149 3.851 16 N -0.629 5.629 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.069 4.069 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.133 3.867 26 N -0.270 5.270 27 N -0.274 5.274 28 C 0.070 3.930 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.155 0.845 37 H 0.416 0.584 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.072 0.928 45 H -0.016 1.016 46 H 0.247 0.753 47 H 0.024 0.976 48 H 0.012 0.988 49 H 0.101 0.899 50 H 0.105 0.895 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 4.265 -36.397 37.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.227 4.227 6 C -0.201 4.201 7 C 0.383 3.617 8 O -0.453 6.453 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.137 4.137 12 C -0.103 4.103 13 H 0.100 0.900 14 C -0.160 4.160 15 C 0.024 3.976 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.094 0.906 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.202 1.202 25 C 0.008 3.992 26 N -0.108 5.108 27 N -0.062 5.062 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.253 0.747 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.002 0.998 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.030 0.970 49 H 0.119 0.881 50 H 0.124 0.876 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.234 3.888 -35.834 36.423 hybrid contribution -0.203 0.829 1.427 1.663 sum -5.437 4.717 -34.408 35.153 Atomic orbital electron populations 1.21849 0.92851 1.02398 1.03151 1.19848 0.96888 0.95608 0.91616 1.21851 1.01164 0.94066 1.03009 1.21805 0.89995 0.99176 0.98436 1.21585 1.03386 1.05503 0.92204 1.21711 0.97648 1.06210 0.94527 1.17222 0.81932 0.78023 0.84494 1.90767 1.32273 1.53825 1.68483 1.45790 1.28312 1.50190 1.11255 1.21393 0.99612 0.99399 0.79659 1.21623 0.97694 1.00276 0.94127 1.22005 0.99445 0.95088 0.93736 0.90038 1.22878 0.98022 0.99340 0.95736 1.21768 0.99850 0.82901 0.93050 1.44860 1.65902 1.05361 1.19364 1.19420 1.29635 0.90882 0.97213 0.90641 1.25654 1.01567 0.97993 1.00911 1.70055 1.46370 1.13221 1.30139 0.85110 0.77901 0.77658 0.78404 1.20640 1.21586 1.20249 1.21563 0.93860 0.96339 0.87415 1.73452 1.23312 1.21393 0.92610 1.45783 1.19539 1.33160 1.07719 1.22655 0.93176 1.05380 0.85593 0.92895 0.89699 0.92715 0.87335 0.92524 0.89620 0.93412 0.82778 0.74741 0.92916 0.91405 0.88451 0.90915 0.89462 0.91470 0.91013 0.99784 0.94297 0.95820 0.96976 0.88078 0.87643 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.78 71.98 0.63 -0.49 16 2 C -0.02 -0.15 3.10 -11.54 -0.04 -0.18 16 3 C -0.14 -0.97 9.18 71.98 0.66 -0.31 16 4 C 0.03 0.47 5.84 41.40 0.24 0.72 16 5 C -0.20 -4.47 9.96 22.41 0.22 -4.25 16 6 C -0.04 -1.12 7.13 42.46 0.30 -0.82 16 7 C 0.60 18.37 7.82 86.74 0.68 19.05 16 8 O -0.58 -21.84 16.93 -3.92 -0.07 -21.91 16 9 N -0.70 -18.34 5.55 -466.10 -2.59 -20.93 16 10 C 0.12 3.41 5.52 86.38 0.48 3.89 16 11 C -0.10 -2.53 4.71 30.59 0.14 -2.39 16 12 C -0.08 -2.81 2.98 -9.61 -0.03 -2.84 16 13 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 14 C -0.12 -4.47 6.53 31.99 0.21 -4.26 16 15 C 0.15 7.63 5.89 86.86 0.51 8.14 16 16 N -0.63 -34.29 3.39 -691.98 -2.35 -36.64 16 17 C -0.24 -14.37 10.27 84.03 0.86 -13.50 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 20 N -0.95 -58.26 10.09 21.65 0.22 -58.04 16 21 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 C 0.13 5.85 5.99 86.73 0.52 6.36 16 26 N -0.27 -5.88 11.67 -48.18 -0.56 -6.44 16 27 N -0.27 -4.10 3.70 -355.92 -1.32 -5.42 16 28 C 0.07 0.29 11.11 127.77 1.42 1.71 16 29 H 0.05 0.55 7.35 -2.38 -0.02 0.53 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.23 6.86 -2.39 -0.02 0.21 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.15 3.48 7.47 -2.91 -0.02 3.46 16 37 H 0.42 8.91 8.20 -92.71 -0.76 8.15 16 38 H 0.05 1.71 7.49 -2.38 -0.02 1.69 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 42 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 44 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 45 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.02 1.03 7.76 -2.39 -0.02 1.01 16 48 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 50 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 51 H 0.13 -0.24 6.88 -2.39 -0.02 -0.26 16 Total: -1.00 -80.78 408.48 2.80 -77.98 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.15 Total: 14.73 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 7.28 Total: 7.23 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -6.60 Total: -127.47 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -80.78 2.80 -77.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267531428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.968 kcal (2) G-P(sol) polarization free energy of solvation -80.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds