Wall clock time and date at job start Tue Mar 31 2020 20:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47295 * 2 1 4 4 C 1.53000 * 109.47703 * 239.99819 * 2 1 3 5 5 C 1.50704 * 109.46823 * 119.99977 * 2 1 3 6 6 C 1.39671 * 126.06914 * 75.27170 * 5 2 1 7 7 C 1.38411 * 105.35762 * 180.14803 * 6 5 2 8 8 C 1.47161 * 126.88388 * 179.91458 * 7 6 5 9 9 O 1.21633 * 119.99986 * 359.70774 * 8 7 6 10 10 N 1.34777 * 119.99978 * 179.43453 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27750 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.46924 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.64066 * 54.29554 * 13 12 11 15 15 C 1.55161 * 110.71952 * 177.43783 * 13 12 11 16 16 C 1.55126 * 101.48113 * 153.73328 * 15 13 12 17 17 N 1.47427 * 104.94260 * 323.22134 * 16 15 13 18 18 C 1.36938 * 125.64691 * 203.96750 * 17 16 15 19 19 H 1.08002 * 120.00239 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99797 * 0.04420 * 18 17 16 21 21 N 1.31614 * 120.00430 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47257 * 90.00080 * 22 20 18 24 24 H 1.48501 * 109.47261 * 210.00072 * 22 20 18 25 25 H 1.48498 * 109.47286 * 329.99723 * 22 20 18 26 26 C 1.47018 * 108.70220 * 24.00623 * 17 16 15 27 27 N 1.36601 * 106.23219 * 359.65214 * 7 6 5 28 28 H 0.96998 * 125.19108 * 180.25187 * 27 7 6 29 29 N 1.28448 * 109.61854 * 0.22656 * 27 7 6 30 30 H 1.08993 * 109.47527 * 300.00249 * 1 2 3 31 31 H 1.09010 * 109.46893 * 60.00331 * 1 2 3 32 32 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47013 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46851 * 299.99671 * 3 2 1 35 35 H 1.09002 * 109.46510 * 59.99586 * 3 2 1 36 36 H 1.09007 * 109.47149 * 300.00503 * 4 2 1 37 37 H 1.09000 * 109.47088 * 59.99933 * 4 2 1 38 38 H 1.08997 * 109.47598 * 180.02562 * 4 2 1 39 39 H 1.07997 * 127.32130 * 0.05387 * 6 5 2 40 40 H 0.97000 * 119.99736 * 0.27024 * 10 8 7 41 41 H 1.08992 * 109.46803 * 299.99362 * 11 10 8 42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 43 43 H 1.09006 * 109.47179 * 299.99384 * 12 11 10 44 44 H 1.08997 * 109.47540 * 59.99921 * 12 11 10 45 45 H 1.08994 * 111.00096 * 271.93583 * 15 13 12 46 46 H 1.08996 * 111.00316 * 35.79262 * 15 13 12 47 47 H 1.08997 * 110.41641 * 204.29485 * 16 15 13 48 48 H 1.08994 * 110.30137 * 82.09392 * 16 15 13 49 49 H 0.97007 * 120.00442 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.88254 * 239.51707 * 26 17 16 51 51 H 1.09001 * 110.01179 * 118.43447 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 2.0357 -2.0915 1.4389 7 6 2.5814 -2.2709 2.6982 8 6 2.8036 -3.5503 3.3904 9 8 2.4906 -4.5953 2.8523 10 7 3.3589 -3.5646 4.6184 11 6 3.5856 -4.8387 5.3050 12 6 4.2225 -4.5755 6.6710 13 6 4.4588 -5.9062 7.3884 14 1 5.0408 -6.5823 6.7622 15 6 5.1635 -5.6773 8.7517 16 6 4.6953 -6.9197 9.5538 17 7 3.3030 -7.1464 9.1252 18 6 2.3418 -7.8008 9.8484 19 1 1.3467 -7.9156 9.4445 20 6 2.6463 -8.3162 11.1008 21 7 3.8586 -8.1755 11.5934 22 14 1.3348 -9.2082 12.0876 23 1 1.3667 -10.6558 11.7584 24 1 1.5961 -9.0245 13.5379 25 1 -0.0009 -8.6533 11.7512 26 6 3.1178 -6.5543 7.7923 27 7 2.8778 -1.0226 3.1672 28 1 3.2777 -0.8299 4.0296 29 7 2.5467 -0.1430 2.2917 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7217 -1.2489 39 1 1.6855 -2.8567 0.7620 40 1 3.6085 -2.7312 5.0475 41 1 2.6341 -5.3528 5.4404 42 1 4.2525 -5.4600 4.7072 43 1 5.1742 -4.0616 6.5353 44 1 3.5560 -3.9541 7.2690 45 1 6.2471 -5.6698 8.6348 46 1 4.8163 -4.7570 9.2213 47 1 4.7345 -6.7182 10.6243 48 1 5.3132 -7.7833 9.3082 49 1 4.0715 -8.5360 12.4684 50 1 2.3356 -5.7960 7.8289 51 1 2.8493 -7.3290 7.0740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267545333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:54 Heat of formation + Delta-G solvation = 39.151992 kcal Electronic energy + Delta-G solvation = -28026.589862 eV Core-core repulsion = 24155.385643 eV Total energy + Delta-G solvation = -3871.204220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.94361 -39.67666 -37.84974 -37.28873 -35.41999 -33.17158 -31.53037 -31.36686 -30.49456 -28.99620 -27.64656 -27.58020 -26.68147 -24.93418 -23.61099 -23.00988 -22.11558 -21.00134 -20.14024 -19.78552 -18.98483 -18.74845 -16.92727 -16.25344 -16.11679 -16.06924 -15.62232 -15.28757 -14.92035 -14.61217 -14.36054 -14.27281 -13.98665 -13.78694 -13.62260 -13.57681 -12.63663 -12.58050 -12.49879 -12.33712 -12.00399 -11.98865 -11.78551 -11.70489 -11.62238 -11.44738 -11.35751 -11.13545 -10.93326 -10.88364 -10.78297 -10.42067 -10.18115 -10.03821 -9.94668 -9.77429 -9.55348 -9.48953 -9.47099 -9.24735 -8.64723 -6.82334 -5.65067 -3.06498 0.94301 2.21566 2.41746 2.76461 2.96023 3.40037 3.45025 3.46809 3.99835 4.31674 4.42388 4.49353 4.64833 4.76598 4.83997 4.94891 5.01123 5.15915 5.21851 5.29374 5.30402 5.38860 5.46179 5.46881 5.53911 5.56548 5.56989 5.57443 5.69868 5.72306 5.79210 5.81088 5.94979 5.96776 5.99984 6.03584 6.14098 6.15458 6.23062 6.35257 6.56844 6.57818 6.60672 6.74436 6.94822 7.12002 7.52150 7.62943 7.63703 7.83171 7.85810 8.36966 9.22924 9.84011 10.49095 11.38810 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.001722 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.809268 B =16258.593851 C =16660.034371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.016 3.984 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.039 3.961 6 C -0.147 4.147 7 C -0.035 4.035 8 C 0.587 3.413 9 O -0.518 6.518 10 N -0.725 5.725 11 C 0.117 3.883 12 C -0.117 4.117 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.139 4.139 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.140 3.860 27 N -0.380 5.380 28 H 0.444 0.556 29 N -0.264 5.264 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.163 0.837 40 H 0.394 0.606 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.011 0.989 49 H 0.251 0.749 50 H 0.022 0.978 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 19.603 -22.324 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.119 4.119 6 C -0.176 4.176 7 C -0.163 4.163 8 C 0.371 3.629 9 O -0.391 6.391 10 N -0.376 5.376 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.117 4.117 14 H 0.091 0.909 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.014 3.986 27 N -0.096 5.096 28 H 0.288 0.712 29 N -0.097 5.097 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.181 0.819 40 H 0.227 0.773 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.029 0.971 49 H 0.062 0.938 50 H 0.040 0.960 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.119 19.689 -22.036 29.551 hybrid contribution -0.435 -0.863 0.980 1.376 sum -0.553 18.826 -21.056 28.250 Atomic orbital electron populations 1.21879 0.93207 1.02445 1.02125 1.18925 0.95486 0.94836 0.89304 1.21773 1.01266 0.94254 1.01958 1.21891 1.01390 1.00567 0.95927 1.21927 1.02926 0.91595 0.95476 1.22007 1.03796 0.96548 0.95253 1.21796 1.10250 0.86500 0.97801 1.16993 0.78028 0.86778 0.81055 1.90872 1.50695 1.31753 1.65819 1.45979 1.63356 1.10750 1.17535 1.21609 1.01936 0.84133 0.92836 1.21810 1.00515 0.99024 0.94168 1.22096 0.98267 0.94658 0.96689 0.90865 1.23075 0.98232 1.01184 0.95253 1.21959 0.83848 0.90953 1.00633 1.44507 1.08731 1.65404 1.14443 1.19093 0.91156 1.27360 0.97377 0.90529 1.24788 0.96914 1.01387 0.97718 1.69800 1.18228 1.50701 1.18461 0.86073 0.80556 0.79524 0.79365 1.21629 1.21661 1.20715 1.21362 0.93835 0.94981 0.88471 1.43613 1.46445 1.02907 1.16657 0.71155 1.73085 1.16602 1.19819 1.00203 0.92444 0.91836 0.92128 0.92503 0.92379 0.92010 0.92006 0.91801 0.92369 0.81923 0.77276 0.90426 0.90965 0.91580 0.91117 0.92440 0.92233 0.87672 0.97133 0.93779 0.96040 0.96218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.46 37.16 0.31 -0.56 16 2 C 0.02 0.12 0.97 -155.66 -0.15 -0.03 16 3 C -0.14 -0.89 8.04 37.16 0.30 -0.59 16 4 C -0.14 -0.84 8.20 37.16 0.30 -0.53 16 5 C 0.04 0.36 5.65 -82.47 -0.47 -0.10 16 6 C -0.15 -1.49 10.12 -38.98 -0.39 -1.88 16 7 C -0.04 -0.36 7.16 -82.06 -0.59 -0.95 16 8 C 0.59 7.04 7.80 -12.64 -0.10 6.94 16 9 O -0.52 -8.22 16.92 5.25 0.09 -8.13 16 10 N -0.73 -7.09 5.55 -61.47 -0.34 -7.43 16 11 C 0.12 1.39 5.54 -4.04 -0.02 1.37 16 12 C -0.12 -1.38 4.72 -26.73 -0.13 -1.51 16 13 C -0.10 -1.58 2.95 -88.78 -0.26 -1.84 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.14 -2.50 6.55 -24.46 -0.16 -2.66 16 16 C 0.15 3.64 5.89 -2.41 -0.01 3.63 16 17 N -0.60 -15.56 3.40 -169.94 -0.58 -16.14 16 18 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 2.86 6.11 -3.07 -0.02 2.85 16 27 N -0.38 -3.09 6.85 33.48 0.23 -2.86 16 28 H 0.44 2.14 8.22 -190.45 -1.57 0.57 16 29 N -0.26 -2.52 11.48 33.64 0.39 -2.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.06 0.36 7.59 -51.93 -0.39 -0.03 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.16 1.54 7.78 -52.49 -0.41 1.13 16 40 H 0.39 2.56 7.66 -40.82 -0.31 2.24 16 41 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.84 8.00 -51.93 -0.42 0.43 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 47 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 407.61 15.07 6.14 6.14 Total: -1.00 -33.86 407.61 -10.24 -44.10 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -10.08 Total: -1.58 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.63 Total: -2.73 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.26 Total: -55.01 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.86 -10.24 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267545333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.254 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds