Wall clock time and date at job start Tue Mar 31 2020 20:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47295 * 2 1 4 4 C 1.53000 * 109.47703 * 239.99819 * 2 1 3 5 5 C 1.50704 * 109.46823 * 119.99977 * 2 1 3 6 6 C 1.39671 * 126.06914 * 75.27170 * 5 2 1 7 7 C 1.38411 * 105.35762 * 180.14803 * 6 5 2 8 8 C 1.47161 * 126.88388 * 179.91458 * 7 6 5 9 9 O 1.21633 * 119.99986 * 359.70774 * 8 7 6 10 10 N 1.34777 * 119.99978 * 179.43453 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27750 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 C 1.53009 * 109.46924 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.64066 * 54.29554 * 13 12 11 15 15 C 1.55161 * 110.71952 * 177.43783 * 13 12 11 16 16 C 1.55126 * 101.48113 * 153.73328 * 15 13 12 17 17 N 1.47427 * 104.94260 * 323.22134 * 16 15 13 18 18 C 1.36938 * 125.64691 * 203.96750 * 17 16 15 19 19 H 1.08002 * 120.00239 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99797 * 0.04420 * 18 17 16 21 21 N 1.31614 * 120.00430 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47257 * 90.00080 * 22 20 18 24 24 H 1.48501 * 109.47261 * 210.00072 * 22 20 18 25 25 H 1.48498 * 109.47286 * 329.99723 * 22 20 18 26 26 C 1.47018 * 108.70220 * 24.00623 * 17 16 15 27 27 N 1.36601 * 106.23219 * 359.65214 * 7 6 5 28 28 H 0.96998 * 125.19108 * 180.25187 * 27 7 6 29 29 N 1.28448 * 109.61854 * 0.22656 * 27 7 6 30 30 H 1.08993 * 109.47527 * 300.00249 * 1 2 3 31 31 H 1.09010 * 109.46893 * 60.00331 * 1 2 3 32 32 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47013 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46851 * 299.99671 * 3 2 1 35 35 H 1.09002 * 109.46510 * 59.99586 * 3 2 1 36 36 H 1.09007 * 109.47149 * 300.00503 * 4 2 1 37 37 H 1.09000 * 109.47088 * 59.99933 * 4 2 1 38 38 H 1.08997 * 109.47598 * 180.02562 * 4 2 1 39 39 H 1.07997 * 127.32130 * 0.05387 * 6 5 2 40 40 H 0.97000 * 119.99736 * 0.27024 * 10 8 7 41 41 H 1.08992 * 109.46803 * 299.99362 * 11 10 8 42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 43 43 H 1.09006 * 109.47179 * 299.99384 * 12 11 10 44 44 H 1.08997 * 109.47540 * 59.99921 * 12 11 10 45 45 H 1.08994 * 111.00096 * 271.93583 * 15 13 12 46 46 H 1.08996 * 111.00316 * 35.79262 * 15 13 12 47 47 H 1.08997 * 110.41641 * 204.29485 * 16 15 13 48 48 H 1.08994 * 110.30137 * 82.09392 * 16 15 13 49 49 H 0.97007 * 120.00442 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.88254 * 239.51707 * 26 17 16 51 51 H 1.09001 * 110.01179 * 118.43447 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 2.0357 -2.0915 1.4389 7 6 2.5814 -2.2709 2.6982 8 6 2.8036 -3.5503 3.3904 9 8 2.4906 -4.5953 2.8523 10 7 3.3589 -3.5646 4.6184 11 6 3.5856 -4.8387 5.3050 12 6 4.2225 -4.5755 6.6710 13 6 4.4588 -5.9062 7.3884 14 1 5.0408 -6.5823 6.7622 15 6 5.1635 -5.6773 8.7517 16 6 4.6953 -6.9197 9.5538 17 7 3.3030 -7.1464 9.1252 18 6 2.3418 -7.8008 9.8484 19 1 1.3467 -7.9156 9.4445 20 6 2.6463 -8.3162 11.1008 21 7 3.8586 -8.1755 11.5934 22 14 1.3348 -9.2082 12.0876 23 1 1.3667 -10.6558 11.7584 24 1 1.5961 -9.0245 13.5379 25 1 -0.0009 -8.6533 11.7512 26 6 3.1178 -6.5543 7.7923 27 7 2.8778 -1.0226 3.1672 28 1 3.2777 -0.8299 4.0296 29 7 2.5467 -0.1430 2.2917 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7217 -1.2489 39 1 1.6855 -2.8567 0.7620 40 1 3.6085 -2.7312 5.0475 41 1 2.6341 -5.3528 5.4404 42 1 4.2525 -5.4600 4.7072 43 1 5.1742 -4.0616 6.5353 44 1 3.5560 -3.9541 7.2690 45 1 6.2471 -5.6698 8.6348 46 1 4.8163 -4.7570 9.2213 47 1 4.7345 -6.7182 10.6243 48 1 5.3132 -7.7833 9.3082 49 1 4.0715 -8.5360 12.4684 50 1 2.3356 -5.7960 7.8289 51 1 2.8493 -7.3290 7.0740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267545333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:52 Heat of formation + Delta-G solvation = 17.056169 kcal Electronic energy + Delta-G solvation = -28027.548009 eV Core-core repulsion = 24155.385643 eV Total energy + Delta-G solvation = -3872.162366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.66645 -40.65452 -39.39091 -37.83963 -36.60228 -34.83988 -32.82265 -32.10158 -31.68950 -30.60523 -28.36461 -28.05847 -27.97350 -26.65426 -24.67258 -23.82061 -23.13913 -21.95635 -21.80381 -20.99818 -19.97048 -19.39099 -18.90042 -17.23494 -17.10232 -16.91502 -16.81736 -16.53311 -15.99133 -15.91877 -15.58110 -15.02235 -14.93734 -14.78980 -14.61123 -14.39968 -14.27338 -13.81981 -13.54161 -13.35777 -13.13780 -13.08177 -12.95282 -12.85132 -12.70202 -12.49113 -12.36272 -12.27311 -12.01257 -12.00763 -11.87264 -11.79287 -11.66778 -11.46414 -11.43992 -11.30064 -11.15229 -10.75173 -10.44349 -10.14897 -10.08023 -8.88160 -7.78530 -5.22661 0.12627 1.44513 1.46348 1.49112 1.55074 1.73103 1.93831 2.07453 2.48338 3.30249 3.34572 3.59480 3.71094 3.75347 3.81799 3.92084 4.13924 4.14743 4.19675 4.28390 4.33390 4.36855 4.47187 4.62201 4.67685 4.70708 4.73455 4.85510 4.87399 4.87833 4.96796 4.99286 5.08899 5.08980 5.09726 5.15154 5.16741 5.24538 5.26223 5.28021 5.43416 5.48249 5.48493 5.50731 5.51245 5.68851 5.83397 5.95209 6.31981 6.33334 6.90268 6.98347 7.11019 7.79283 8.42654 9.22929 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.001722 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.809268 B =16258.593851 C =16660.034371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.013 3.987 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.035 3.965 6 C -0.159 4.159 7 C -0.043 4.043 8 C 0.590 3.410 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.123 3.877 12 C -0.101 4.101 13 C -0.084 4.084 14 H 0.080 0.920 15 C -0.121 4.121 16 C 0.148 3.852 17 N -0.629 5.629 18 C -0.241 4.241 19 H 0.077 0.923 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.133 3.867 27 N -0.364 5.364 28 H 0.458 0.542 29 N -0.272 5.272 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.163 0.837 40 H 0.413 0.587 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.071 0.929 48 H -0.018 1.018 49 H 0.247 0.753 50 H 0.026 0.974 51 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 21.726 -23.521 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.011 3.989 3 C -0.188 4.188 4 C -0.196 4.196 5 C -0.123 4.123 6 C -0.188 4.188 7 C -0.172 4.172 8 C 0.375 3.625 9 O -0.440 6.440 10 N -0.360 5.360 11 C 0.000 4.000 12 C -0.139 4.139 13 C -0.104 4.104 14 H 0.098 0.902 15 C -0.160 4.160 16 C 0.023 3.977 17 N -0.355 5.355 18 C -0.370 4.370 19 H 0.094 0.906 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.195 1.195 26 C 0.008 3.992 27 N -0.083 5.083 28 H 0.306 0.694 29 N -0.105 5.105 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.181 0.819 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.000 1.000 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.019 21.871 -23.227 31.903 hybrid contribution -0.469 -1.525 1.331 2.078 sum -0.488 20.346 -21.896 29.893 Atomic orbital electron populations 1.21866 0.92635 1.02346 1.02576 1.19062 0.95926 0.95047 0.88827 1.21740 1.00791 0.93925 1.02388 1.21883 1.01002 1.00607 0.96070 1.22280 1.02569 0.91340 0.96071 1.22178 1.03991 0.97156 0.95495 1.21539 1.11169 0.86468 0.97974 1.17158 0.77371 0.86693 0.81263 1.90851 1.52753 1.33383 1.67012 1.45743 1.62382 1.11076 1.16770 1.21410 1.00773 0.84763 0.93099 1.21653 1.02452 0.96551 0.93238 1.22009 0.95275 0.96810 0.96262 0.90178 1.22909 1.00075 0.98120 0.94875 1.21805 0.83302 0.92808 0.99789 1.44852 1.08864 1.65452 1.16324 1.19450 0.91918 1.27604 0.98001 0.90553 1.25630 0.99039 1.02585 0.98829 1.70059 1.19830 1.51466 1.18424 0.85064 0.78529 0.78114 0.77543 1.21508 1.21675 1.19528 1.21582 0.96759 0.94828 0.86052 1.43621 1.45690 1.01905 1.17035 0.69434 1.73084 1.16801 1.20049 1.00556 0.93295 0.90072 0.92515 0.93160 0.90669 0.92856 0.92185 0.90119 0.92953 0.81925 0.75024 0.92685 0.91204 0.88115 0.90541 0.89516 0.91329 0.91124 0.99982 0.94339 0.95585 0.97036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.46 71.98 0.61 -0.93 16 2 C 0.01 0.17 0.97 -52.93 -0.05 0.12 16 3 C -0.13 -1.51 8.04 71.98 0.58 -0.93 16 4 C -0.14 -1.45 8.20 71.98 0.59 -0.86 16 5 C 0.04 0.61 5.65 43.05 0.24 0.86 16 6 C -0.16 -3.12 10.12 22.66 0.23 -2.89 16 7 C -0.04 -0.82 7.16 40.79 0.29 -0.53 16 8 C 0.59 13.51 7.80 86.59 0.68 14.19 16 9 O -0.56 -17.88 16.92 -4.14 -0.07 -17.95 16 10 N -0.71 -12.25 5.55 -466.64 -2.59 -14.84 16 11 C 0.12 2.66 5.54 86.38 0.48 3.14 16 12 C -0.10 -2.03 4.72 30.60 0.14 -1.89 16 13 C -0.08 -2.54 2.95 -9.60 -0.03 -2.56 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.12 -4.12 6.55 32.06 0.21 -3.91 16 16 C 0.15 7.26 5.89 86.93 0.51 7.78 16 17 N -0.63 -32.88 3.40 -691.57 -2.35 -35.23 16 18 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 20 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 21 N -0.95 -57.06 10.09 21.65 0.22 -56.84 16 22 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.13 5.41 6.11 86.73 0.53 5.94 16 27 N -0.36 -5.25 6.85 -47.99 -0.33 -5.58 16 28 H 0.46 3.25 8.22 -220.00 -1.81 1.44 16 29 N -0.27 -4.77 11.48 -47.49 -0.54 -5.31 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 36 H 0.06 0.65 7.59 -2.38 -0.02 0.63 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.16 3.09 7.78 -2.91 -0.02 3.06 16 40 H 0.41 3.98 7.66 -92.71 -0.71 3.27 16 41 H 0.05 1.47 7.58 -2.39 -0.02 1.45 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.23 8.05 -2.39 -0.02 2.21 16 47 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 50 H 0.03 1.04 7.73 -2.38 -0.02 1.02 16 51 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.05 407.61 1.11 -74.94 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -1.59 Total: 11.33 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.34 Total: 1.07 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -5.59 Total: -117.80 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.07 Total: -17.95 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.05 1.11 -74.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267545333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.993 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds