Wall clock time and date at job start Tue Mar 31 2020 20:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00204 * 2 1 4 4 H 1.08000 * 119.99892 * 154.66155 * 3 2 1 5 5 C 1.38818 * 119.99775 * 334.66500 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.06679 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.06413 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46508 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46487 * 90.00029 * 11 2 1 13 13 H 1.08997 * 110.88560 * 57.43172 * 12 11 2 14 14 C 1.55163 * 110.99728 * 181.35184 * 12 11 2 15 15 C 1.54323 * 102.93976 * 153.57863 * 14 12 11 16 16 N 1.47020 * 107.27065 * 337.80171 * 15 14 12 17 17 C 1.34782 * 125.64878 * 178.90775 * 16 15 14 18 18 O 1.21626 * 120.00093 * 180.02562 * 17 16 15 19 19 C 1.47165 * 119.99874 * 0.04353 * 17 16 15 20 20 C 1.38398 * 126.88373 * 179.71182 * 19 17 16 21 21 C 1.39668 * 105.36275 * 179.91597 * 20 19 17 22 22 C 1.50698 * 126.07485 * 180.16271 * 21 20 19 23 23 C 1.53000 * 109.47406 * 75.24921 * 22 21 20 24 24 C 1.53000 * 109.47264 * 195.24777 * 22 21 20 25 25 C 1.52998 * 109.46967 * 315.24729 * 22 21 20 26 26 N 1.30872 * 107.85924 * 0.34926 * 21 20 19 27 27 N 1.28440 * 110.92647 * 359.77781 * 26 21 20 28 28 H 0.97000 * 125.19160 * 179.97438 * 27 26 21 29 29 C 1.47421 * 108.70355 * 358.94635 * 16 15 14 30 30 H 1.08992 * 109.47302 * 84.48240 * 1 2 3 31 31 H 1.09000 * 109.46838 * 324.48377 * 1 2 3 32 32 H 1.08997 * 109.46678 * 204.48623 * 1 2 3 33 33 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46812 * 209.99549 * 11 2 1 35 35 H 1.08996 * 109.47010 * 330.00151 * 11 2 1 36 36 H 1.09002 * 110.72023 * 271.93384 * 14 12 11 37 37 H 1.08993 * 110.72243 * 35.21390 * 14 12 11 38 38 H 1.09006 * 109.88114 * 218.38888 * 15 14 12 39 39 H 1.09002 * 110.01436 * 97.29199 * 15 14 12 40 40 H 1.08005 * 127.32019 * 0.03444 * 20 19 17 41 41 H 1.08997 * 109.47192 * 60.00103 * 23 22 21 42 42 H 1.08998 * 109.47305 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.46822 * 300.00592 * 23 22 21 44 44 H 1.09003 * 109.46885 * 60.00375 * 24 22 21 45 45 H 1.08998 * 109.47001 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47217 * 299.99826 * 24 22 21 47 47 H 1.09007 * 109.46867 * 60.00267 * 25 22 21 48 48 H 1.08998 * 109.47330 * 179.97438 * 25 22 21 49 49 H 1.08996 * 109.47277 * 299.99941 * 25 22 21 50 50 H 1.09001 * 110.36626 * 265.28608 * 29 16 15 51 51 H 1.09002 * 110.46245 * 143.01172 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1518 1.2308 0.4003 5 6 1.5558 2.3303 -0.5144 6 7 0.3070 2.2942 -0.9285 7 14 2.5290 3.9213 -0.6189 8 1 3.8995 3.6988 -0.0922 9 1 2.6078 4.3612 -2.0351 10 1 1.8531 4.9689 0.1880 11 6 2.1976 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 3.0020 -0.9466 -1.9912 14 6 3.1982 -3.0710 -1.4828 15 6 2.7694 -3.6594 -2.8435 16 7 1.5089 -3.0052 -3.2241 17 6 0.8194 -3.2295 -4.3603 18 8 -0.2163 -2.6279 -4.5720 19 6 1.3195 -4.2025 -5.3447 20 6 0.7278 -4.5458 -6.5478 21 6 1.5749 -5.4988 -7.1180 22 6 1.3718 -6.1867 -8.4433 23 6 1.7053 -5.2163 -9.5782 24 6 2.2898 -7.4076 -8.5302 25 6 -0.0858 -6.6348 -8.5673 26 7 2.5742 -5.6911 -6.2952 27 7 2.4577 -4.9521 -5.2512 28 1 3.0823 -4.9298 -4.5095 29 6 1.1246 -2.0628 -2.1577 30 1 -0.3633 0.0988 -1.0228 31 1 -0.3633 0.8365 0.5970 32 1 -0.3632 -0.9352 0.4259 33 1 -0.1079 3.0938 -1.2883 34 1 3.1500 -1.1382 0.5143 35 1 1.6085 -2.0282 0.5147 36 1 4.2773 -2.9203 -1.4508 37 1 2.8731 -3.7139 -0.6650 38 1 2.6157 -4.7346 -2.7506 39 1 3.5332 -3.4578 -3.5946 40 1 -0.1923 -4.1578 -6.9592 41 1 2.7438 -4.8971 -9.4899 42 1 1.5580 -5.7137 -10.5368 43 1 1.0514 -4.3464 -9.5163 44 1 2.0522 -8.0991 -7.7217 45 1 2.1426 -7.9055 -9.4886 46 1 3.3283 -7.0884 -8.4419 47 1 -0.7398 -5.7649 -8.5055 48 1 -0.2328 -7.1320 -9.5260 49 1 -0.3234 -7.3262 -7.7589 50 1 0.4331 -2.5384 -1.4622 51 1 0.6751 -1.1664 -2.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267586503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:04 Heat of formation + Delta-G solvation = 59.429874 kcal Electronic energy + Delta-G solvation = -29418.945154 eV Core-core repulsion = 25548.620250 eV Total energy + Delta-G solvation = -3870.324905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.77660 -39.79190 -37.60699 -37.15081 -35.43106 -32.56855 -31.18975 -31.03144 -30.50977 -28.79532 -27.52056 -27.45512 -26.37703 -25.54329 -24.08547 -22.81775 -21.96498 -21.20114 -20.52642 -19.81636 -18.93311 -17.72874 -16.70582 -16.40419 -16.11704 -15.78728 -15.44949 -14.85563 -14.79526 -14.35037 -14.10445 -14.03911 -13.78837 -13.63016 -13.52354 -13.17215 -12.74834 -12.54808 -12.48038 -12.42772 -12.36237 -11.94068 -11.86483 -11.55655 -11.48452 -11.31129 -11.22875 -11.08946 -10.85419 -10.76297 -10.71628 -10.53772 -10.32741 -10.07925 -10.03345 -9.95709 -9.81801 -9.30018 -9.23730 -8.60764 -8.52230 -6.77094 -5.74678 -3.22147 1.18902 2.40771 2.62275 2.93963 3.21596 3.36177 3.43011 3.45027 4.13306 4.33315 4.46371 4.52959 4.55737 4.76131 4.77907 4.84900 4.97001 5.12362 5.16452 5.31428 5.37749 5.41601 5.44715 5.47508 5.54764 5.58746 5.64234 5.68931 5.69879 5.84537 5.86294 5.88435 5.92164 5.95354 6.07593 6.09608 6.13920 6.21946 6.34481 6.41638 6.48278 6.62459 6.79236 6.80702 6.87480 7.46262 7.48891 7.76108 7.82820 7.86496 8.10461 8.40710 9.24084 9.84971 10.34418 11.29754 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002441 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.806923 B =11468.546693 C =11878.098972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.164 3.836 12 C -0.117 4.117 13 H 0.086 0.914 14 C -0.126 4.126 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.598 3.402 18 O -0.516 6.516 19 C -0.026 4.026 20 C -0.151 4.151 21 C 0.038 3.962 22 C 0.017 3.983 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.140 4.140 26 N -0.271 5.271 27 N -0.384 5.384 28 H 0.443 0.557 29 C 0.122 3.878 30 H 0.028 0.972 31 H 0.052 0.948 32 H -0.010 1.010 33 H 0.252 0.748 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.162 0.838 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -19.901 -11.368 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.327 5.327 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.036 3.964 12 C -0.139 4.139 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.038 4.038 16 N -0.349 5.349 17 C 0.385 3.615 18 O -0.390 6.390 19 C -0.155 4.155 20 C -0.180 4.180 21 C -0.121 4.121 22 C 0.015 3.985 23 C -0.196 4.196 24 C -0.192 4.192 25 C -0.197 4.197 26 N -0.104 5.104 27 N -0.105 5.105 28 H 0.293 0.707 29 C 0.002 3.998 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.009 0.991 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.180 0.820 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.924 -20.004 -11.418 23.553 hybrid contribution 0.190 1.439 0.143 1.458 sum 5.114 -18.565 -11.275 22.314 Atomic orbital electron populations 1.20931 0.82242 0.95314 0.99516 1.43953 1.02023 1.00544 1.86161 1.19212 0.99227 0.86332 1.33909 0.91362 1.25170 0.96516 0.98756 0.98751 1.70086 1.11132 1.27916 1.45862 0.86231 0.79495 0.83718 0.77418 1.20379 1.21606 1.21710 1.20767 0.96138 0.88444 0.91055 1.23276 0.94167 0.94788 1.01705 0.89563 1.22692 1.01213 0.98121 0.94429 1.22229 0.86292 0.96601 0.98701 1.48583 1.23923 1.42794 1.19587 1.16628 0.83761 0.81492 0.79628 1.90874 1.22896 1.49056 1.76179 1.21799 0.92309 1.01510 0.99859 1.21968 1.02202 1.00211 0.93628 1.21886 0.92840 0.99808 0.97523 1.18901 0.96566 0.94655 0.88341 1.21876 1.01984 0.98907 0.96866 1.21764 0.99561 0.96423 1.01417 1.21886 0.94241 1.01678 1.01936 1.73041 1.24627 1.16255 0.96461 1.44306 1.19390 1.29386 1.17369 0.70705 1.22396 0.97709 0.92332 0.87397 0.95413 0.92904 0.99144 0.93695 0.93162 0.94193 0.89918 0.90314 0.91856 0.91810 0.81996 0.92485 0.91923 0.92120 0.92538 0.92477 0.92041 0.91989 0.91899 0.92394 0.91609 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.15 59.85 0.49 4.48 16 2 N -0.60 -14.47 2.85 -181.11 -0.52 -14.99 16 3 C -0.26 -6.82 9.67 -15.06 -0.15 -6.97 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.01 0.18 5.38 -17.43 -0.09 0.08 16 6 N -0.91 -26.14 10.12 55.49 0.56 -25.58 16 7 Si 0.90 21.63 29.56 -169.99 -5.02 16.61 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.16 3.04 5.22 -4.04 -0.02 3.02 16 12 C -0.12 -1.92 3.29 -88.47 -0.29 -2.21 16 13 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 14 C -0.13 -1.42 6.42 -24.89 -0.16 -1.58 16 15 C 0.09 0.93 5.13 -3.07 -0.02 0.91 16 16 N -0.61 -9.39 3.33 -171.88 -0.57 -9.96 16 17 C 0.60 10.05 7.84 -12.63 -0.10 9.95 16 18 O -0.52 -10.65 17.17 5.25 0.09 -10.56 16 19 C -0.03 -0.37 6.98 -82.06 -0.57 -0.94 16 20 C -0.15 -1.97 10.12 -38.99 -0.39 -2.37 16 21 C 0.04 0.44 5.65 -82.47 -0.47 -0.03 16 22 C 0.02 0.15 0.97 -155.66 -0.15 0.00 16 23 C -0.14 -1.11 8.46 37.16 0.31 -0.80 16 24 C -0.13 -1.08 8.04 37.16 0.30 -0.78 16 25 C -0.14 -1.07 8.20 37.16 0.30 -0.77 16 26 N -0.27 -3.28 11.48 33.64 0.39 -2.90 16 27 N -0.38 -4.48 6.51 33.48 0.22 -4.26 16 28 H 0.44 4.08 4.98 -190.46 -0.95 3.13 16 29 C 0.12 2.17 5.37 -2.53 -0.01 2.15 16 30 H 0.03 0.73 6.88 -51.93 -0.36 0.37 16 31 H 0.05 1.41 7.03 -51.93 -0.37 1.05 16 32 H -0.01 -0.21 7.83 -51.93 -0.41 -0.62 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 35 H 0.04 0.67 7.81 -51.93 -0.41 0.27 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 38 H 0.06 0.55 7.26 -51.93 -0.38 0.17 16 39 H 0.06 0.61 7.11 -51.93 -0.37 0.24 16 40 H 0.16 1.99 7.78 -52.48 -0.41 1.58 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 47 H 0.06 0.48 7.59 -51.92 -0.39 0.08 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 51 H 0.09 1.99 7.54 -51.93 -0.39 1.60 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -32.07 400.61 -9.28 -41.36 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -9.44 Total: 0.07 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.02 Total: 4.17 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.08 Total: -57.69 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.07 -9.28 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267586503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.786 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds