Wall clock time and date at job start Tue Mar 31 2020 20:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00204 * 2 1 4 4 H 1.08000 * 119.99892 * 154.66155 * 3 2 1 5 5 C 1.38818 * 119.99775 * 334.66500 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.06679 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.06413 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46508 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46487 * 90.00029 * 11 2 1 13 13 H 1.08997 * 110.88560 * 57.43172 * 12 11 2 14 14 C 1.55163 * 110.99728 * 181.35184 * 12 11 2 15 15 C 1.54323 * 102.93976 * 153.57863 * 14 12 11 16 16 N 1.47020 * 107.27065 * 337.80171 * 15 14 12 17 17 C 1.34782 * 125.64878 * 178.90775 * 16 15 14 18 18 O 1.21626 * 120.00093 * 180.02562 * 17 16 15 19 19 C 1.47165 * 119.99874 * 0.04353 * 17 16 15 20 20 C 1.38398 * 126.88373 * 179.71182 * 19 17 16 21 21 C 1.39668 * 105.36275 * 179.91597 * 20 19 17 22 22 C 1.50698 * 126.07485 * 180.16271 * 21 20 19 23 23 C 1.53000 * 109.47406 * 75.24921 * 22 21 20 24 24 C 1.53000 * 109.47264 * 195.24777 * 22 21 20 25 25 C 1.52998 * 109.46967 * 315.24729 * 22 21 20 26 26 N 1.30872 * 107.85924 * 0.34926 * 21 20 19 27 27 N 1.28440 * 110.92647 * 359.77781 * 26 21 20 28 28 H 0.97000 * 125.19160 * 179.97438 * 27 26 21 29 29 C 1.47421 * 108.70355 * 358.94635 * 16 15 14 30 30 H 1.08992 * 109.47302 * 84.48240 * 1 2 3 31 31 H 1.09000 * 109.46838 * 324.48377 * 1 2 3 32 32 H 1.08997 * 109.46678 * 204.48623 * 1 2 3 33 33 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46812 * 209.99549 * 11 2 1 35 35 H 1.08996 * 109.47010 * 330.00151 * 11 2 1 36 36 H 1.09002 * 110.72023 * 271.93384 * 14 12 11 37 37 H 1.08993 * 110.72243 * 35.21390 * 14 12 11 38 38 H 1.09006 * 109.88114 * 218.38888 * 15 14 12 39 39 H 1.09002 * 110.01436 * 97.29199 * 15 14 12 40 40 H 1.08005 * 127.32019 * 0.03444 * 20 19 17 41 41 H 1.08997 * 109.47192 * 60.00103 * 23 22 21 42 42 H 1.08998 * 109.47305 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.46822 * 300.00592 * 23 22 21 44 44 H 1.09003 * 109.46885 * 60.00375 * 24 22 21 45 45 H 1.08998 * 109.47001 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47217 * 299.99826 * 24 22 21 47 47 H 1.09007 * 109.46867 * 60.00267 * 25 22 21 48 48 H 1.08998 * 109.47330 * 179.97438 * 25 22 21 49 49 H 1.08996 * 109.47277 * 299.99941 * 25 22 21 50 50 H 1.09001 * 110.36626 * 265.28608 * 29 16 15 51 51 H 1.09002 * 110.46245 * 143.01172 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1518 1.2308 0.4003 5 6 1.5558 2.3303 -0.5144 6 7 0.3070 2.2942 -0.9285 7 14 2.5290 3.9213 -0.6189 8 1 3.8995 3.6988 -0.0922 9 1 2.6078 4.3612 -2.0351 10 1 1.8531 4.9689 0.1880 11 6 2.1976 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 3.0020 -0.9466 -1.9912 14 6 3.1982 -3.0710 -1.4828 15 6 2.7694 -3.6594 -2.8435 16 7 1.5089 -3.0052 -3.2241 17 6 0.8194 -3.2295 -4.3603 18 8 -0.2163 -2.6279 -4.5720 19 6 1.3195 -4.2025 -5.3447 20 6 0.7278 -4.5458 -6.5478 21 6 1.5749 -5.4988 -7.1180 22 6 1.3718 -6.1867 -8.4433 23 6 1.7053 -5.2163 -9.5782 24 6 2.2898 -7.4076 -8.5302 25 6 -0.0858 -6.6348 -8.5673 26 7 2.5742 -5.6911 -6.2952 27 7 2.4577 -4.9521 -5.2512 28 1 3.0823 -4.9298 -4.5095 29 6 1.1246 -2.0628 -2.1577 30 1 -0.3633 0.0988 -1.0228 31 1 -0.3633 0.8365 0.5970 32 1 -0.3632 -0.9352 0.4259 33 1 -0.1079 3.0938 -1.2883 34 1 3.1500 -1.1382 0.5143 35 1 1.6085 -2.0282 0.5147 36 1 4.2773 -2.9203 -1.4508 37 1 2.8731 -3.7139 -0.6650 38 1 2.6157 -4.7346 -2.7506 39 1 3.5332 -3.4578 -3.5946 40 1 -0.1923 -4.1578 -6.9592 41 1 2.7438 -4.8971 -9.4899 42 1 1.5580 -5.7137 -10.5368 43 1 1.0514 -4.3464 -9.5163 44 1 2.0522 -8.0991 -7.7217 45 1 2.1426 -7.9055 -9.4886 46 1 3.3283 -7.0884 -8.4419 47 1 -0.7398 -5.7649 -8.5055 48 1 -0.2328 -7.1320 -9.5260 49 1 -0.3234 -7.3262 -7.7589 50 1 0.4331 -2.5384 -1.4622 51 1 0.6751 -1.1664 -2.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267586503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:02 Heat of formation + Delta-G solvation = 39.843539 kcal Electronic energy + Delta-G solvation = -29419.794482 eV Core-core repulsion = 25548.620250 eV Total energy + Delta-G solvation = -3871.174232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.76448 -41.05316 -38.99383 -37.87790 -37.17072 -34.12870 -32.61787 -32.17612 -31.67330 -30.07700 -28.32084 -28.07021 -28.04940 -27.27791 -25.35406 -23.78092 -23.06651 -22.81473 -21.63115 -21.22611 -19.81970 -18.81625 -18.69003 -17.58730 -17.31700 -16.88653 -16.83414 -16.35135 -15.81689 -15.50208 -15.41705 -15.12113 -14.91278 -14.73564 -14.60842 -14.54315 -14.30483 -13.98539 -13.86460 -13.23654 -13.13738 -13.09052 -12.94893 -12.87865 -12.62317 -12.49830 -12.42229 -12.36107 -12.18616 -12.03547 -11.98599 -11.88267 -11.80763 -11.64797 -11.55054 -11.44887 -11.30863 -10.61970 -10.35521 -10.19641 -9.84225 -8.75406 -7.83072 -5.30843 0.06412 1.43779 1.44619 1.45413 1.54667 1.54974 1.86459 1.99470 2.49532 3.14386 3.31646 3.38982 3.51645 3.62295 3.78556 3.86495 3.98999 4.13006 4.13415 4.20012 4.22848 4.32662 4.41895 4.52504 4.63428 4.67308 4.79711 4.79985 4.84714 4.86034 4.88396 4.93985 4.96107 5.01250 5.08088 5.09002 5.12861 5.17395 5.25510 5.26376 5.42104 5.45800 5.46753 5.47672 5.50481 5.65678 5.81199 5.90374 6.24526 6.36151 6.75618 6.91851 7.17795 7.89835 8.33716 9.20714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002441 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.806923 B =11468.546693 C =11878.098972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.622 5.622 3 C -0.254 4.254 4 H 0.078 0.922 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.963 3.037 8 H -0.260 1.260 9 H -0.299 1.299 10 H -0.294 1.294 11 C 0.161 3.839 12 C -0.110 4.110 13 H 0.056 0.944 14 C -0.108 4.108 15 C 0.078 3.922 16 N -0.614 5.614 17 C 0.594 3.406 18 O -0.570 6.570 19 C -0.040 4.040 20 C -0.158 4.158 21 C 0.039 3.961 22 C 0.014 3.986 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.138 4.138 26 N -0.269 5.269 27 N -0.369 5.369 28 H 0.454 0.546 29 C 0.130 3.870 30 H -0.005 1.005 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.244 0.756 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.162 0.838 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -22.820 -11.587 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.345 5.345 3 C -0.384 4.384 4 H 0.096 0.904 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.792 3.208 8 H -0.184 1.184 9 H -0.226 1.226 10 H -0.221 1.221 11 C 0.034 3.966 12 C -0.132 4.132 13 H 0.075 0.925 14 C -0.147 4.147 15 C -0.044 4.044 16 N -0.346 5.346 17 C 0.382 3.618 18 O -0.448 6.448 19 C -0.169 4.169 20 C -0.187 4.187 21 C -0.119 4.119 22 C 0.013 3.987 23 C -0.195 4.195 24 C -0.188 4.188 25 C -0.196 4.196 26 N -0.102 5.102 27 N -0.092 5.092 28 H 0.306 0.694 29 C 0.008 3.992 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.179 0.821 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.684 -22.981 -11.601 26.866 hybrid contribution -0.619 2.254 0.227 2.349 sum 7.066 -20.727 -11.374 24.676 Atomic orbital electron populations 1.20562 0.83134 0.95398 0.97141 1.44192 1.01934 1.02018 1.86320 1.19589 0.99262 0.87322 1.32246 0.90444 1.25923 0.97403 1.02081 0.99609 1.70290 1.12696 1.28073 1.47715 0.85245 0.78983 0.79994 0.76556 1.18416 1.22613 1.22137 1.20994 0.96501 0.86541 0.92523 1.22965 0.93748 0.97199 0.99332 0.92512 1.22686 1.02224 0.94504 0.95255 1.22592 0.84513 0.98181 0.99130 1.48614 1.25183 1.42213 1.18627 1.17016 0.83217 0.81402 0.80145 1.90838 1.25349 1.51240 1.77407 1.21399 0.93723 1.02065 0.99674 1.22161 1.02494 1.00463 0.93584 1.22329 0.91982 0.99227 0.98387 1.19077 0.97592 0.95020 0.87061 1.21874 1.01281 0.98708 0.97599 1.21737 0.98754 0.95860 1.02401 1.21888 0.93258 1.01532 1.02919 1.73059 1.24591 1.16029 0.96522 1.44278 1.18694 1.28562 1.17626 0.69385 1.22108 0.98438 0.90814 0.87882 0.98697 0.96084 0.96037 0.94672 0.91660 0.91900 0.87082 0.87950 0.88414 0.89918 0.82051 0.93237 0.89753 0.92812 0.93071 0.90414 0.92754 0.92470 0.89814 0.92897 0.91499 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 8.15 127.77 1.04 10.25 16 2 N -0.62 -29.99 2.85 -726.92 -2.07 -32.06 16 3 C -0.25 -13.55 9.67 84.03 0.81 -12.74 16 4 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 5 C -0.06 -3.14 5.38 84.86 0.46 -2.69 16 6 N -0.94 -57.03 10.12 21.65 0.22 -56.81 16 7 Si 0.96 45.44 29.56 68.60 2.03 47.47 16 8 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 9 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 C 0.16 5.65 5.22 86.38 0.45 6.11 16 12 C -0.11 -3.49 3.29 -9.40 -0.03 -3.52 16 13 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.11 -1.99 6.42 31.78 0.20 -1.79 16 15 C 0.08 1.44 5.13 86.73 0.45 1.88 16 16 N -0.61 -18.54 3.33 -815.96 -2.71 -21.25 16 17 C 0.59 20.44 7.84 86.59 0.68 21.12 16 18 O -0.57 -25.07 17.17 -4.11 -0.07 -25.14 16 19 C -0.04 -1.10 6.98 40.78 0.28 -0.82 16 20 C -0.16 -4.09 10.12 22.65 0.23 -3.86 16 21 C 0.04 0.84 5.65 43.05 0.24 1.09 16 22 C 0.01 0.23 0.97 -52.93 -0.05 0.18 16 23 C -0.14 -1.95 8.46 71.98 0.61 -1.35 16 24 C -0.13 -1.78 8.04 71.98 0.58 -1.20 16 25 C -0.14 -1.87 8.20 71.98 0.59 -1.28 16 26 N -0.27 -5.96 11.48 -47.49 -0.55 -6.51 16 27 N -0.37 -7.84 6.51 -48.00 -0.31 -8.15 16 28 H 0.45 6.89 4.98 -220.01 -1.10 5.80 16 29 C 0.13 4.71 5.37 86.85 0.47 5.17 16 30 H -0.01 -0.30 6.88 -2.39 -0.02 -0.32 16 31 H 0.02 1.15 7.03 -2.39 -0.02 1.14 16 32 H 0.02 0.92 7.83 -2.39 -0.02 0.90 16 33 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.07 2.12 8.04 -2.39 -0.02 2.11 16 35 H 0.06 1.94 7.81 -2.39 -0.02 1.92 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 1.50 8.04 -2.39 -0.02 1.48 16 38 H 0.10 1.23 7.26 -2.38 -0.02 1.21 16 39 H 0.08 1.27 7.11 -2.39 -0.02 1.25 16 40 H 0.16 4.10 7.78 -2.91 -0.02 4.08 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 47 H 0.06 0.83 7.59 -2.38 -0.02 0.81 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 2.38 8.00 -2.39 -0.02 2.36 16 51 H 0.03 1.59 7.54 -2.39 -0.02 1.57 16 Total: -1.00 -75.04 400.61 3.36 -71.68 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -0.18 Total: 14.22 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 7.01 Total: 16.55 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -5.42 Total: -124.78 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.07 Total: -25.14 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -75.04 3.36 -71.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267586503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.528 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds