Wall clock time and date at job start Tue Mar 31 2020 19:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47114 * 2 1 4 4 C 1.50692 * 109.47365 * 120.00032 * 2 1 3 5 5 C 1.39677 * 126.07063 * 275.28532 * 4 2 1 6 6 C 1.38407 * 105.35937 * 180.09194 * 5 4 2 7 7 C 1.47168 * 126.88007 * 179.91442 * 6 5 4 8 8 O 1.21630 * 119.99513 * 174.54163 * 7 6 5 9 9 N 1.34776 * 120.00088 * 354.54352 * 7 6 5 10 10 C 1.47024 * 125.65022 * 4.93496 * 9 7 6 11 11 C 1.54326 * 107.27103 * 178.90894 * 10 9 7 12 12 C 1.55162 * 102.94148 * 337.80690 * 11 10 9 13 13 H 1.09000 * 111.03579 * 277.41718 * 12 11 10 14 14 C 1.52997 * 110.99932 * 153.57515 * 12 11 10 15 15 N 1.46503 * 109.46623 * 181.34844 * 14 12 11 16 16 C 1.46502 * 119.99918 * 90.00367 * 15 14 12 17 17 C 1.36943 * 120.00365 * 270.00334 * 15 14 12 18 18 H 1.07996 * 119.99698 * 23.61230 * 17 15 14 19 19 C 1.38807 * 120.00051 * 203.61689 * 17 15 14 20 20 N 1.31619 * 120.00232 * 15.84195 * 19 17 15 21 21 Si 1.86797 * 119.99990 * 195.84623 * 19 17 15 22 22 H 1.48501 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47558 * 119.99518 * 21 19 17 24 24 H 1.48495 * 109.47322 * 240.00038 * 21 19 17 25 25 C 1.47426 * 125.64596 * 184.89663 * 9 7 6 26 26 N 1.36599 * 106.23146 * 359.65113 * 6 5 4 27 27 C 1.46497 * 125.18677 * 180.20668 * 26 6 5 28 28 N 1.28441 * 109.61853 * 0.22728 * 26 6 5 29 29 H 1.08996 * 109.47430 * 300.00251 * 1 2 3 30 30 H 1.09002 * 109.47174 * 60.00088 * 1 2 3 31 31 H 1.09007 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46920 * 240.00238 * 2 1 3 33 33 H 1.08998 * 109.47151 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47028 * 300.00002 * 3 2 1 35 35 H 1.08996 * 109.47177 * 59.99594 * 3 2 1 36 36 H 1.08004 * 127.31684 * 359.96399 * 5 4 2 37 37 H 1.09003 * 109.88026 * 298.32524 * 10 9 7 38 38 H 1.08997 * 109.88019 * 59.48730 * 10 9 7 39 39 H 1.08991 * 110.71710 * 219.44538 * 11 10 9 40 40 H 1.09000 * 110.71728 * 96.16906 * 11 10 9 41 41 H 1.09001 * 109.46862 * 61.35539 * 14 12 11 42 42 H 1.08996 * 109.47485 * 301.34498 * 14 12 11 43 43 H 1.08996 * 109.47121 * 94.41746 * 16 15 14 44 44 H 1.09002 * 109.47252 * 334.41557 * 16 15 14 45 45 H 1.09002 * 109.46854 * 214.41678 * 16 15 14 46 46 H 0.97005 * 120.00341 * 180.02562 * 20 19 17 47 47 H 1.09004 * 110.36729 * 85.32552 * 25 9 7 48 48 H 1.08997 * 110.36856 * 323.00632 * 25 9 7 49 49 H 1.09005 * 109.47310 * 84.22821 * 27 26 6 50 50 H 1.09004 * 109.47226 * 204.22851 * 27 26 6 51 51 H 1.09001 * 109.47003 * 324.22685 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2084 -0.1418 2.4940 6 6 2.6845 -1.1661 3.2938 7 6 3.0327 -1.0831 4.7212 8 8 3.3474 -2.0881 5.3298 9 7 3.0028 0.1064 5.3541 10 6 2.5450 1.3760 4.7710 11 6 2.6651 2.4541 5.8687 12 6 2.6495 1.6207 7.1774 13 1 1.6294 1.3756 7.4730 14 6 3.3826 2.3535 8.3028 15 7 3.3755 1.5247 9.5108 16 6 4.4634 0.5739 9.7532 17 6 2.3520 1.6387 10.4135 18 1 1.3924 2.0194 10.0965 19 6 2.5480 1.2649 11.7358 20 7 3.7689 1.1011 12.1994 21 14 1.0789 0.9943 12.8575 22 1 -0.1743 1.2414 12.1001 23 1 1.0883 -0.4041 13.3569 24 1 1.1547 1.9311 14.0072 25 6 3.4231 0.3498 6.7461 26 7 2.7608 -2.2710 2.4941 27 6 3.2134 -3.5958 2.9256 28 7 2.3756 -1.9709 1.3061 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.0161 0.8805 2.7845 37 1 3.1732 1.6412 3.9206 38 1 1.5064 1.2847 4.4531 39 1 1.8148 3.1351 5.8350 40 1 3.6028 3.0011 5.7710 41 1 2.8806 3.2991 8.5080 42 1 4.4119 2.5465 8.0007 43 1 5.2212 1.0414 10.3819 44 1 4.9095 0.2821 8.8024 45 1 4.0688 -0.3093 10.2557 46 1 3.9058 0.8395 13.1235 47 1 4.4978 0.5259 6.7926 48 1 3.1485 -0.4944 7.3784 49 1 2.3807 -4.1349 3.3775 50 1 3.5817 -4.1525 2.0638 51 1 4.0146 -3.4858 3.6565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267592583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:44 Heat of formation + Delta-G solvation = 66.395475 kcal Electronic energy + Delta-G solvation = -29616.770433 eV Core-core repulsion = 25746.747579 eV Total energy + Delta-G solvation = -3870.022854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.73592 -39.80696 -37.65047 -36.16820 -35.39492 -32.89953 -32.26811 -31.12142 -30.54156 -28.72142 -27.45360 -26.94662 -26.42490 -25.48789 -24.11759 -22.81746 -21.81350 -21.24323 -20.40588 -19.83179 -18.86105 -17.31129 -16.66308 -16.51025 -16.43836 -15.89404 -15.46359 -14.84473 -14.77370 -14.42305 -14.20655 -14.04705 -13.67638 -13.54908 -13.52848 -13.06271 -12.81907 -12.79700 -12.67820 -12.49742 -12.38157 -12.31170 -11.77830 -11.66881 -11.47290 -11.43205 -11.38198 -11.01707 -10.97517 -10.75103 -10.65040 -10.45224 -10.37953 -10.08238 -10.05636 -9.85890 -9.83747 -9.25178 -9.03631 -8.58299 -8.52459 -6.73325 -5.72407 -3.19213 1.17746 2.20793 2.39674 3.05435 3.15519 3.38229 3.46024 3.47526 4.14906 4.26682 4.49652 4.60308 4.69890 4.77990 4.90795 4.93561 5.02669 5.03000 5.11530 5.16690 5.31036 5.33971 5.37101 5.38898 5.41989 5.46681 5.51254 5.58778 5.64160 5.68381 5.77013 5.88167 5.92334 5.99068 6.01631 6.04643 6.11124 6.20424 6.32527 6.36318 6.48772 6.58630 6.67251 6.76041 6.84862 7.35633 7.46970 7.71966 7.81623 7.89869 8.08594 8.40416 9.23404 9.87560 10.36509 11.32235 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.002598 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.609378 B =10776.743810 C =11372.635611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.029 3.971 5 C -0.194 4.194 6 C -0.027 4.027 7 C 0.599 3.401 8 O -0.542 6.542 9 N -0.601 5.601 10 C 0.094 3.906 11 C -0.130 4.130 12 C -0.118 4.118 13 H 0.083 0.917 14 C 0.163 3.837 15 N -0.600 5.600 16 C 0.158 3.842 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.122 3.878 26 N -0.260 5.260 27 C 0.090 3.910 28 N -0.279 5.279 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.169 0.831 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.030 0.970 44 H 0.002 0.998 45 H 0.038 0.962 46 H 0.252 0.748 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -0.194 -24.899 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.128 4.128 5 C -0.222 4.222 6 C -0.156 4.156 7 C 0.387 3.613 8 O -0.420 6.420 9 N -0.333 5.333 10 C -0.029 4.029 11 C -0.168 4.168 12 C -0.140 4.140 13 H 0.102 0.898 14 C 0.034 3.966 15 N -0.323 5.323 16 C 0.014 3.986 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.001 3.999 26 N -0.046 5.046 27 C -0.050 4.050 28 N -0.112 5.112 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.110 -2.016 -24.966 25.136 hybrid contribution -0.831 0.337 1.225 1.518 sum -2.941 -1.679 -23.741 23.981 Atomic orbital electron populations 1.21819 0.93967 1.02134 1.02090 1.19404 0.95603 0.94966 0.92893 1.21830 1.01372 0.94680 1.02274 1.21945 1.04339 0.90161 0.96350 1.22579 1.06656 1.00295 0.92689 1.21387 1.11139 0.89024 0.94010 1.16499 0.78197 0.82712 0.83940 1.90809 1.49805 1.34153 1.67276 1.48265 1.63120 1.07017 1.14940 1.22426 0.99416 0.83848 0.97188 1.22731 1.03004 0.96821 0.94285 1.23245 1.01416 0.94203 0.95161 0.89819 1.20654 0.96690 0.93063 0.86151 1.43894 1.25821 1.42108 1.20439 1.20840 0.90582 0.92753 0.94461 1.19174 0.90528 1.40319 0.88560 0.91465 1.25008 0.96105 1.01830 0.96615 1.70085 1.18763 1.51304 1.14679 0.86250 0.82372 0.77566 0.80732 1.20316 1.21641 1.21786 1.22449 0.98631 0.99511 0.79275 1.45515 1.44629 1.09540 1.04962 1.22279 1.02196 0.78707 1.01810 1.73093 1.17243 1.17839 1.03015 0.92282 0.92023 0.92605 0.89950 0.92372 0.91933 0.92096 0.81400 0.91027 0.91069 0.89995 0.90456 0.92753 0.94322 0.95178 0.97982 0.94291 0.93814 0.91349 0.89751 0.89660 0.88887 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.15 0.34 -0.70 16 2 C -0.01 -0.07 3.38 -91.78 -0.31 -0.38 16 3 C -0.14 -0.93 8.79 37.16 0.33 -0.60 16 4 C 0.03 0.32 6.12 -82.47 -0.51 -0.18 16 5 C -0.19 -2.22 8.59 -38.98 -0.33 -2.56 16 6 C -0.03 -0.38 6.92 -82.06 -0.57 -0.94 16 7 C 0.60 9.50 7.82 -12.64 -0.10 9.40 16 8 O -0.54 -10.06 15.13 5.25 0.08 -9.98 16 9 N -0.60 -8.78 3.33 -171.88 -0.57 -9.35 16 10 C 0.09 1.02 5.00 -3.06 -0.02 1.01 16 11 C -0.13 -1.45 6.42 -24.89 -0.16 -1.61 16 12 C -0.12 -1.85 3.29 -88.47 -0.29 -2.15 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 14 C 0.16 3.05 5.17 -4.04 -0.02 3.03 16 15 N -0.60 -14.49 2.84 -181.12 -0.51 -15.01 16 16 C 0.16 3.83 8.63 59.85 0.52 4.35 16 17 C -0.26 -6.88 9.63 -15.06 -0.14 -7.02 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.09 5.03 -17.43 -0.09 0.00 16 20 N -0.90 -26.35 10.92 55.49 0.61 -25.75 16 21 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 C 0.12 2.02 4.96 -2.53 -0.01 2.01 16 26 N -0.26 -3.43 3.75 -63.88 -0.24 -3.67 16 27 C 0.09 0.94 10.59 59.85 0.63 1.58 16 28 N -0.28 -3.63 11.90 33.64 0.40 -3.23 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.37 7.37 -51.93 -0.38 -0.01 16 36 H 0.17 1.54 4.12 -52.48 -0.22 1.32 16 37 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 38 H 0.07 0.70 7.01 -51.93 -0.36 0.34 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 42 H 0.04 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.03 0.79 7.36 -51.93 -0.38 0.41 16 44 H 0.00 0.04 6.18 -51.93 -0.32 -0.28 16 45 H 0.04 1.03 7.41 -51.93 -0.38 0.64 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.07 1.13 7.20 -51.93 -0.37 0.76 16 48 H 0.08 1.66 7.99 -51.93 -0.41 1.24 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.11 1.18 6.78 -51.93 -0.35 0.83 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -32.79 398.35 -8.57 -41.36 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.58 Total: -2.40 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.73 Total: 5.23 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.32 Total: -57.01 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.79 -8.57 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267592583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.759 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds