Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47114 * 2 1 4 4 C 1.50692 * 109.47365 * 120.00032 * 2 1 3 5 5 C 1.39677 * 126.07063 * 275.28532 * 4 2 1 6 6 C 1.38407 * 105.35937 * 180.09194 * 5 4 2 7 7 C 1.47168 * 126.88007 * 179.91442 * 6 5 4 8 8 O 1.21630 * 119.99513 * 174.54163 * 7 6 5 9 9 N 1.34776 * 120.00088 * 354.54352 * 7 6 5 10 10 C 1.47024 * 125.65022 * 4.93496 * 9 7 6 11 11 C 1.54326 * 107.27103 * 178.90894 * 10 9 7 12 12 C 1.55162 * 102.94148 * 337.80690 * 11 10 9 13 13 H 1.09000 * 111.03579 * 277.41718 * 12 11 10 14 14 C 1.52997 * 110.99932 * 153.57515 * 12 11 10 15 15 N 1.46503 * 109.46623 * 181.34844 * 14 12 11 16 16 C 1.46502 * 119.99918 * 90.00367 * 15 14 12 17 17 C 1.36943 * 120.00365 * 270.00334 * 15 14 12 18 18 H 1.07996 * 119.99698 * 23.61230 * 17 15 14 19 19 C 1.38807 * 120.00051 * 203.61689 * 17 15 14 20 20 N 1.31619 * 120.00232 * 15.84195 * 19 17 15 21 21 Si 1.86797 * 119.99990 * 195.84623 * 19 17 15 22 22 H 1.48501 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47558 * 119.99518 * 21 19 17 24 24 H 1.48495 * 109.47322 * 240.00038 * 21 19 17 25 25 C 1.47426 * 125.64596 * 184.89663 * 9 7 6 26 26 N 1.36599 * 106.23146 * 359.65113 * 6 5 4 27 27 C 1.46497 * 125.18677 * 180.20668 * 26 6 5 28 28 N 1.28441 * 109.61853 * 0.22728 * 26 6 5 29 29 H 1.08996 * 109.47430 * 300.00251 * 1 2 3 30 30 H 1.09002 * 109.47174 * 60.00088 * 1 2 3 31 31 H 1.09007 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46920 * 240.00238 * 2 1 3 33 33 H 1.08998 * 109.47151 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47028 * 300.00002 * 3 2 1 35 35 H 1.08996 * 109.47177 * 59.99594 * 3 2 1 36 36 H 1.08004 * 127.31684 * 359.96399 * 5 4 2 37 37 H 1.09003 * 109.88026 * 298.32524 * 10 9 7 38 38 H 1.08997 * 109.88019 * 59.48730 * 10 9 7 39 39 H 1.08991 * 110.71710 * 219.44538 * 11 10 9 40 40 H 1.09000 * 110.71728 * 96.16906 * 11 10 9 41 41 H 1.09001 * 109.46862 * 61.35539 * 14 12 11 42 42 H 1.08996 * 109.47485 * 301.34498 * 14 12 11 43 43 H 1.08996 * 109.47121 * 94.41746 * 16 15 14 44 44 H 1.09002 * 109.47252 * 334.41557 * 16 15 14 45 45 H 1.09002 * 109.46854 * 214.41678 * 16 15 14 46 46 H 0.97005 * 120.00341 * 180.02562 * 20 19 17 47 47 H 1.09004 * 110.36729 * 85.32552 * 25 9 7 48 48 H 1.08997 * 110.36856 * 323.00632 * 25 9 7 49 49 H 1.09005 * 109.47310 * 84.22821 * 27 26 6 50 50 H 1.09004 * 109.47226 * 204.22851 * 27 26 6 51 51 H 1.09001 * 109.47003 * 324.22685 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2084 -0.1418 2.4940 6 6 2.6845 -1.1661 3.2938 7 6 3.0327 -1.0831 4.7212 8 8 3.3474 -2.0881 5.3298 9 7 3.0028 0.1064 5.3541 10 6 2.5450 1.3760 4.7710 11 6 2.6651 2.4541 5.8687 12 6 2.6495 1.6207 7.1774 13 1 1.6294 1.3756 7.4730 14 6 3.3826 2.3535 8.3028 15 7 3.3755 1.5247 9.5108 16 6 4.4634 0.5739 9.7532 17 6 2.3520 1.6387 10.4135 18 1 1.3924 2.0194 10.0965 19 6 2.5480 1.2649 11.7358 20 7 3.7689 1.1011 12.1994 21 14 1.0789 0.9943 12.8575 22 1 -0.1743 1.2414 12.1001 23 1 1.0883 -0.4041 13.3569 24 1 1.1547 1.9311 14.0072 25 6 3.4231 0.3498 6.7461 26 7 2.7608 -2.2710 2.4941 27 6 3.2134 -3.5958 2.9256 28 7 2.3756 -1.9709 1.3061 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.0161 0.8805 2.7845 37 1 3.1732 1.6412 3.9206 38 1 1.5064 1.2847 4.4531 39 1 1.8148 3.1351 5.8350 40 1 3.6028 3.0011 5.7710 41 1 2.8806 3.2991 8.5080 42 1 4.4119 2.5465 8.0007 43 1 5.2212 1.0414 10.3819 44 1 4.9095 0.2821 8.8024 45 1 4.0688 -0.3093 10.2557 46 1 3.9058 0.8395 13.1235 47 1 4.4978 0.5259 6.7926 48 1 3.1485 -0.4944 7.3784 49 1 2.3807 -4.1349 3.3775 50 1 3.5817 -4.1525 2.0638 51 1 4.0146 -3.4858 3.6565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267592583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = 46.748047 kcal Electronic energy + Delta-G solvation = -29617.622409 eV Core-core repulsion = 25746.747579 eV Total energy + Delta-G solvation = -3870.874830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.66941 -40.98896 -38.93958 -37.20772 -36.77571 -34.23508 -33.29328 -32.62153 -31.73194 -29.98377 -28.25228 -27.98437 -27.69623 -27.24992 -25.31917 -23.75029 -22.85338 -22.76758 -21.41229 -21.16476 -19.75349 -18.64015 -18.36385 -17.60626 -17.45662 -16.99594 -16.84565 -16.38125 -15.85961 -15.45924 -15.29110 -15.07233 -14.93427 -14.88749 -14.46719 -14.38274 -14.19616 -13.85971 -13.78589 -13.52116 -13.40755 -13.29569 -12.93960 -12.85703 -12.81332 -12.55659 -12.41205 -12.30196 -12.21801 -12.03369 -11.98650 -11.96571 -11.77790 -11.61340 -11.44527 -11.37232 -11.24296 -10.61072 -10.26542 -9.93436 -9.70589 -8.74058 -7.81541 -5.29796 0.14338 1.25366 1.44481 1.47228 1.51674 1.56373 1.99610 2.03633 2.51390 3.21514 3.31868 3.38564 3.60625 3.71108 3.84821 3.95655 4.09793 4.13549 4.20699 4.26233 4.29052 4.34992 4.41553 4.49809 4.54562 4.58908 4.63223 4.70682 4.73093 4.78344 4.89994 4.92017 4.93456 5.03503 5.05688 5.07672 5.12229 5.18949 5.24647 5.28492 5.37528 5.44093 5.48995 5.52277 5.56152 5.65521 5.69172 5.69494 6.33290 6.35442 6.83950 7.04024 7.16560 7.90055 8.33991 9.21514 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.002598 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.609378 B =10776.743810 C =11372.635611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.141 4.141 4 C 0.027 3.973 5 C -0.178 4.178 6 C -0.051 4.051 7 C 0.593 3.407 8 O -0.583 6.583 9 N -0.600 5.600 10 C 0.089 3.911 11 C -0.115 4.115 12 C -0.109 4.109 13 H 0.064 0.936 14 C 0.160 3.840 15 N -0.617 5.617 16 C 0.176 3.824 17 C -0.255 4.255 18 H 0.073 0.927 19 C -0.056 4.056 20 N -0.938 5.938 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.291 1.291 25 C 0.128 3.872 26 N -0.270 5.270 27 C 0.088 3.912 28 N -0.295 5.295 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.195 0.805 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.004 0.996 44 H 0.031 0.969 45 H 0.005 0.995 46 H 0.246 0.754 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.086 0.914 50 H 0.115 0.885 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 2.062 -27.882 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.199 4.199 4 C -0.130 4.130 5 C -0.207 4.207 6 C -0.179 4.179 7 C 0.382 3.618 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.032 4.032 11 C -0.153 4.153 12 C -0.131 4.131 13 H 0.082 0.918 14 C 0.034 3.966 15 N -0.340 5.340 16 C 0.031 3.969 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.251 4.251 20 N -0.586 5.586 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.225 1.225 24 H -0.218 1.218 25 C 0.006 3.994 26 N -0.058 5.058 27 C -0.052 4.052 28 N -0.128 5.128 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.212 0.788 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.024 0.976 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.105 0.895 50 H 0.134 0.866 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.499 0.285 -28.006 28.225 hybrid contribution -0.405 -0.357 2.034 2.104 sum -3.904 -0.072 -25.972 26.264 Atomic orbital electron populations 1.21805 0.93196 1.01537 1.03188 1.19565 0.96142 0.95835 0.91357 1.21836 1.01084 0.93364 1.03622 1.22549 1.03329 0.89665 0.97445 1.22902 1.04856 1.00806 0.92093 1.21285 1.13108 0.90356 0.93175 1.16849 0.77674 0.82477 0.84789 1.90781 1.51716 1.35618 1.68323 1.48290 1.62684 1.08116 1.14129 1.22739 1.00996 0.81701 0.97755 1.22733 1.05213 0.96570 0.90760 1.22922 0.99354 0.94378 0.96441 0.91773 1.20870 0.98162 0.92753 0.84794 1.44137 1.25130 1.42986 1.21761 1.20525 0.90021 0.91382 0.94981 1.19523 0.91432 1.38683 0.88944 0.90906 1.25754 0.98327 1.02751 0.98270 1.70234 1.20571 1.53134 1.14616 0.85286 0.80082 0.76671 0.78936 1.18867 1.22502 1.21805 1.22198 0.98659 0.98410 0.80180 1.45742 1.44987 1.10041 1.05001 1.22353 1.01907 0.78369 1.02521 1.73101 1.17708 1.18994 1.02972 0.92138 0.89981 0.94068 0.90001 0.92833 0.90197 0.91214 0.78803 0.88231 0.89297 0.87382 0.88711 0.92260 0.92758 0.97768 0.95073 0.97647 0.94457 0.91435 0.93883 0.89504 0.86609 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.17 71.98 0.66 -0.98 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.28 8.79 71.98 0.63 -0.65 16 4 C 0.03 0.54 6.12 43.05 0.26 0.81 16 5 C -0.18 -3.59 8.59 22.66 0.19 -3.40 16 6 C -0.05 -1.37 6.92 40.79 0.28 -1.09 16 7 C 0.59 18.76 7.82 86.59 0.68 19.44 16 8 O -0.58 -22.54 15.13 -4.12 -0.06 -22.60 16 9 N -0.60 -16.77 3.33 -815.94 -2.71 -19.48 16 10 C 0.09 1.59 5.00 86.73 0.43 2.02 16 11 C -0.11 -2.07 6.42 31.79 0.20 -1.87 16 12 C -0.11 -3.24 3.29 -9.40 -0.03 -3.27 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.16 5.78 5.17 86.38 0.45 6.23 16 15 N -0.62 -30.01 2.84 -726.93 -2.06 -32.07 16 16 C 0.18 8.80 8.63 127.77 1.10 9.91 16 17 C -0.26 -13.79 9.63 84.03 0.81 -12.98 16 18 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 19 C -0.06 -3.17 5.03 84.86 0.43 -2.74 16 20 N -0.94 -56.44 10.92 21.65 0.24 -56.20 16 21 Si 0.96 45.57 29.58 68.60 2.03 47.60 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 C 0.13 4.18 4.96 86.86 0.43 4.61 16 26 N -0.27 -7.02 3.75 -356.01 -1.33 -8.35 16 27 C 0.09 1.88 10.59 127.77 1.35 3.23 16 28 N -0.29 -7.31 11.90 -47.50 -0.57 -7.88 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.52 7.37 -2.39 -0.02 0.50 16 36 H 0.20 2.66 4.12 -2.91 -0.01 2.65 16 37 H 0.10 1.31 6.91 -2.39 -0.02 1.29 16 38 H 0.09 1.33 7.01 -2.39 -0.02 1.31 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.46 8.04 -2.39 -0.02 1.45 16 41 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 42 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 43 H 0.00 0.22 7.36 -2.39 -0.02 0.21 16 44 H 0.03 1.33 6.18 -2.39 -0.01 1.32 16 45 H 0.00 0.26 7.41 -2.39 -0.02 0.25 16 46 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 47 H 0.07 2.20 7.20 -2.38 -0.02 2.19 16 48 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 49 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 50 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.09 2.21 6.78 -2.39 -0.02 2.19 16 Total: -1.00 -74.40 398.35 4.29 -70.11 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.91 Total: 9.75 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.85 Total: 19.12 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.44 Total: -123.98 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.40 4.29 -70.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267592583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.857 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds