Wall clock time and date at job start Tue Mar 31 2020 20:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 C 1.52998 * 109.47110 * 239.99544 * 2 1 3 5 5 C 1.50693 * 109.46859 * 119.99675 * 2 1 3 6 6 C 1.39678 * 126.07212 * 75.00249 * 5 2 1 7 7 C 1.38398 * 105.35957 * 179.97438 * 6 5 2 8 8 C 1.47171 * 126.88229 * 179.97438 * 7 6 5 9 9 O 1.21625 * 119.99912 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00012 * 174.81259 * 10 8 7 12 12 C 1.53002 * 110.43515 * 302.04205 * 11 10 8 13 13 N 1.46497 * 109.47120 * 307.73153 * 12 11 10 14 14 C 1.36940 * 120.00131 * 174.97094 * 13 12 11 15 15 H 1.08002 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00288 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00414 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99841 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46976 * 90.00661 * 18 16 14 20 20 H 1.48502 * 109.47166 * 210.00147 * 18 16 14 21 21 H 1.48500 * 109.47154 * 330.00624 * 18 16 14 22 22 C 1.54885 * 110.48802 * 179.35944 * 11 10 8 23 23 C 1.54886 * 102.74716 * 279.26504 * 22 11 10 24 24 C 1.54268 * 104.19429 * 322.05351 * 23 22 11 25 25 C 1.53870 * 106.59704 * 23.61430 * 24 23 22 26 26 N 1.36596 * 106.23587 * 359.97438 * 7 6 5 27 27 H 0.97001 * 125.19204 * 179.97438 * 26 7 6 28 28 N 1.28441 * 109.61878 * 359.97438 * 26 7 6 29 29 H 1.08991 * 109.47517 * 300.00410 * 1 2 3 30 30 H 1.09000 * 109.46695 * 60.00567 * 1 2 3 31 31 H 1.09000 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47047 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46505 * 299.99470 * 3 2 1 34 34 H 1.08991 * 109.47314 * 59.99466 * 3 2 1 35 35 H 1.09000 * 109.47588 * 300.00037 * 4 2 1 36 36 H 1.09002 * 109.46920 * 60.00335 * 4 2 1 37 37 H 1.09006 * 109.46937 * 180.02562 * 4 2 1 38 38 H 1.07996 * 127.31708 * 0.23465 * 6 5 2 39 39 H 0.97000 * 119.99886 * 354.81781 * 10 8 7 40 40 H 1.09009 * 109.47058 * 67.72873 * 12 11 10 41 41 H 1.08997 * 109.47324 * 187.73136 * 12 11 10 42 42 H 0.96993 * 120.00230 * 354.97088 * 13 12 11 43 43 H 0.96993 * 120.00353 * 180.02562 * 17 16 14 44 44 H 1.08999 * 110.75586 * 37.57849 * 22 11 10 45 45 H 1.09005 * 110.75574 * 160.94759 * 22 11 10 46 46 H 1.09008 * 110.48428 * 203.38021 * 23 22 11 47 47 H 1.08999 * 110.49038 * 80.73764 * 23 22 11 48 48 H 1.08999 * 110.03494 * 264.32242 * 24 23 22 49 49 H 1.09005 * 110.02771 * 142.89871 * 24 23 22 50 50 H 1.09001 * 110.03054 * 240.70769 * 25 24 23 51 51 H 1.09003 * 110.03178 * 119.28403 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0309 -2.0911 1.4411 7 6 2.5823 -2.2708 2.6977 8 6 2.8038 -3.5502 3.3905 9 8 2.4891 -4.5950 2.8532 10 7 3.3553 -3.5641 4.6201 11 6 3.4716 -4.8252 5.3565 12 6 2.0946 -5.4671 5.5376 13 7 1.1730 -4.4893 6.1212 14 6 -0.1499 -4.8054 6.2806 15 1 -0.5139 -5.7754 5.9756 16 6 -1.0233 -3.8787 6.8331 17 7 -2.2946 -4.1826 6.9867 18 14 -0.3939 -2.2006 7.3599 19 1 -0.5010 -1.2523 6.2222 20 1 -1.2071 -1.7020 8.4981 21 1 1.0265 -2.3136 7.7782 22 6 4.1483 -4.5906 6.7299 23 6 5.6527 -4.5390 6.3652 24 6 5.8125 -5.6098 5.2662 25 6 4.4257 -5.7917 4.6249 26 7 2.8799 -1.0226 3.1662 27 1 3.2800 -0.8299 4.0286 28 7 2.5490 -0.1431 2.2906 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.6787 -2.8562 0.7651 39 1 3.6751 -2.7391 5.0176 40 1 1.7146 -5.7913 4.5687 41 1 2.1792 -6.3277 6.2011 42 1 1.4997 -3.6180 6.3948 43 1 -2.9050 -3.5350 7.3724 44 1 3.8234 -3.6451 7.1641 45 1 3.9433 -5.4190 7.4080 46 1 6.2642 -4.7884 7.2325 47 1 5.9185 -3.5545 5.9803 48 1 6.1467 -6.5494 5.7061 49 1 6.5289 -5.2720 4.5173 50 1 4.0868 -6.8197 4.7534 51 1 4.4690 -5.5422 3.5646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267838987.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:30 Heat of formation + Delta-G solvation = 7.970080 kcal Electronic energy + Delta-G solvation = -30396.879711 eV Core-core repulsion = 26524.323342 eV Total energy + Delta-G solvation = -3872.556369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.67369 -41.38031 -38.84007 -37.86002 -36.38776 -34.69192 -33.47529 -32.11921 -31.79304 -30.02713 -29.70274 -28.11720 -28.09644 -26.40996 -24.75187 -23.80629 -23.66672 -21.91484 -21.43211 -20.83916 -20.09155 -19.68036 -19.37413 -17.33810 -17.01186 -16.84893 -16.54616 -16.27394 -16.10716 -15.78457 -15.53573 -15.22241 -15.01587 -14.86723 -14.71331 -14.52646 -14.38809 -14.06499 -13.94981 -13.74691 -13.11438 -12.98174 -12.96095 -12.60933 -12.52254 -12.41763 -12.29600 -12.22795 -12.11365 -12.02989 -11.98238 -11.90000 -11.87544 -11.77647 -11.49000 -11.32331 -11.17820 -10.88170 -10.32484 -10.16417 -10.03395 -9.31985 -8.06734 -5.39488 0.16501 1.23445 1.31848 1.39273 1.48653 1.72368 1.93050 2.20408 2.41572 3.23782 3.33141 3.36734 3.57641 3.64665 3.79184 3.81434 3.93384 4.11307 4.18652 4.31186 4.33934 4.42432 4.49102 4.57358 4.62035 4.66860 4.75709 4.79580 4.82112 4.85065 4.87080 4.93624 5.02851 5.05757 5.06275 5.11174 5.11649 5.14338 5.24595 5.26286 5.29922 5.44889 5.46474 5.47054 5.49564 5.56163 5.71716 5.93413 6.16021 6.40198 6.90788 7.03385 7.07098 7.77178 8.00505 9.15528 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.004582 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.759520 B = 6109.282058 C = 8047.704840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.014 3.986 3 C -0.129 4.129 4 C -0.135 4.135 5 C 0.036 3.964 6 C -0.164 4.164 7 C -0.042 4.042 8 C 0.596 3.404 9 O -0.546 6.546 10 N -0.699 5.699 11 C 0.169 3.831 12 C 0.149 3.851 13 N -0.743 5.743 14 C -0.231 4.231 15 H 0.047 0.953 16 C -0.064 4.064 17 N -0.985 5.985 18 Si 0.953 3.047 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.239 1.239 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.121 4.121 26 N -0.369 5.369 27 H 0.455 0.545 28 N -0.273 5.273 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.160 0.840 39 H 0.405 0.595 40 H 0.020 0.980 41 H 0.033 0.967 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.135 9.485 -10.392 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 C -0.186 4.186 4 C -0.193 4.193 5 C -0.122 4.122 6 C -0.193 4.193 7 C -0.171 4.171 8 C 0.381 3.619 9 O -0.422 6.422 10 N -0.351 5.351 11 C 0.083 3.917 12 C 0.021 3.979 13 N -0.389 5.389 14 C -0.362 4.362 15 H 0.065 0.935 16 C -0.255 4.255 17 N -0.635 5.635 18 Si 0.780 3.220 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.163 1.163 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.160 4.160 26 N -0.086 5.086 27 H 0.302 0.698 28 N -0.106 5.106 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.177 0.823 39 H 0.241 0.759 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.029 9.559 -10.295 24.465 hybrid contribution -0.667 0.145 0.849 1.089 sum 19.362 9.704 -9.446 23.628 Atomic orbital electron populations 1.21891 0.93226 1.02078 1.02489 1.19066 0.95458 0.95356 0.88863 1.21725 1.00972 0.93575 1.02351 1.21860 1.01158 1.00410 0.95844 1.22325 1.02487 0.91219 0.96208 1.22139 1.04085 0.97305 0.95753 1.21750 1.10643 0.86783 0.97923 1.17031 0.76984 0.86565 0.81321 1.90796 1.51623 1.32895 1.66885 1.45646 1.61896 1.11351 1.16173 1.21442 0.93725 0.83713 0.92793 1.21129 0.88959 0.91943 0.95832 1.42383 1.05108 1.15589 1.75775 1.18991 0.85143 0.99358 1.32723 0.93478 1.25498 0.95414 1.02425 1.02178 1.69891 1.04246 1.36915 1.52491 0.85444 0.79272 0.79889 0.77433 1.21342 1.22012 1.16334 1.22798 0.95997 1.03334 0.93718 1.22377 0.94245 0.99562 0.98958 1.22109 0.95146 1.00050 0.97998 1.22397 0.95115 0.98738 0.99726 1.43562 1.46025 1.02080 1.16939 0.69832 1.73024 1.17237 1.19959 1.00386 0.93923 0.89485 0.93093 0.92715 0.90329 0.93228 0.92550 0.89788 0.92525 0.82278 0.75882 0.96150 0.94927 0.80111 0.93389 0.90650 0.89575 0.89462 0.90539 0.90525 0.91098 0.91332 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.46 71.98 0.61 -2.23 16 2 C 0.01 0.29 0.96 -52.93 -0.05 0.24 16 3 C -0.13 -2.26 8.04 71.98 0.58 -1.69 16 4 C -0.13 -2.23 8.20 71.98 0.59 -1.64 16 5 C 0.04 0.94 5.65 43.05 0.24 1.19 16 6 C -0.16 -4.90 10.13 22.66 0.23 -4.67 16 7 C -0.04 -1.27 7.15 40.79 0.29 -0.98 16 8 C 0.60 19.79 7.04 86.59 0.61 20.40 16 9 O -0.55 -22.29 13.86 -4.11 -0.06 -22.34 16 10 N -0.70 -18.89 4.54 -421.55 -1.91 -20.80 16 11 C 0.17 4.84 0.40 4.68 0.00 4.84 16 12 C 0.15 6.02 4.74 86.38 0.41 6.43 16 13 N -0.74 -35.16 5.11 -343.45 -1.76 -36.91 16 14 C -0.23 -13.74 10.47 84.03 0.88 -12.86 16 15 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 16 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 17 N -0.98 -64.98 13.97 21.65 0.30 -64.68 16 18 Si 0.95 45.60 27.74 68.60 1.90 47.51 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 22 C -0.12 -2.67 5.66 31.88 0.18 -2.49 16 23 C -0.11 -1.76 6.79 31.67 0.22 -1.54 16 24 C -0.12 -2.02 6.80 31.32 0.21 -1.80 16 25 C -0.12 -3.07 5.67 31.32 0.18 -2.89 16 26 N -0.37 -9.09 6.85 -47.99 -0.33 -9.42 16 27 H 0.45 7.92 8.23 -220.00 -1.81 6.10 16 28 N -0.27 -7.27 11.48 -47.49 -0.54 -7.82 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 35 H 0.06 0.99 7.59 -2.39 -0.02 0.97 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.16 4.69 7.79 -2.91 -0.02 4.67 16 39 H 0.41 8.03 7.69 -92.71 -0.71 7.32 16 40 H 0.02 0.97 6.53 -2.38 -0.02 0.95 16 41 H 0.03 1.32 8.02 -2.39 -0.02 1.30 16 42 H 0.37 15.86 5.13 -92.71 -0.48 15.38 16 43 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 45 H 0.09 2.01 7.97 -2.38 -0.02 1.99 16 46 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 50 H 0.07 1.82 7.84 -2.39 -0.02 1.80 16 51 H 0.06 1.74 6.55 -2.39 -0.02 1.73 16 Total: -1.00 -79.48 401.41 1.14 -78.34 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -2.11 Total: 39.22 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.65 Total: -3.09 kcal Atomic # 7 Polarization: -135.39 SS G_CDS: -4.24 Total: -139.63 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.51 kcal Total: -79.48 1.14 -78.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267838987.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.314 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds