Wall clock time and date at job start Tue Mar 31 2020 19:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47515 * 2 1 4 4 C 1.50695 * 109.47431 * 179.97438 * 3 2 1 5 5 N 1.30447 * 125.98586 * 269.99871 * 4 3 2 6 6 N 1.39938 * 108.89680 * 180.02562 * 5 4 3 7 7 H 0.96995 * 125.75595 * 179.97438 * 6 5 4 8 8 C 1.34268 * 108.49020 * 359.75095 * 6 5 4 9 9 C 1.38043 * 107.41387 * 0.39537 * 8 6 5 10 10 C 1.47433 * 126.41045 * 179.87286 * 9 8 6 11 11 O 1.21610 * 119.99690 * 139.70030 * 10 9 8 12 12 N 1.34770 * 120.00123 * 319.69889 * 10 9 8 13 13 C 1.46929 * 120.60502 * 354.50624 * 12 10 9 14 14 C 1.53194 * 108.77616 * 233.53627 * 13 12 10 15 15 C 1.53041 * 109.33532 * 305.41426 * 14 13 12 16 16 C 1.53040 * 109.53780 * 61.34991 * 15 14 13 17 17 H 1.08999 * 109.50392 * 58.61725 * 16 15 14 18 18 C 1.53003 * 109.49799 * 178.68284 * 16 15 14 19 19 C 1.52997 * 109.46971 * 184.99781 * 18 16 15 20 20 N 1.46504 * 109.46909 * 179.97438 * 19 18 16 21 21 C 1.36936 * 119.99956 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00054 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00155 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00391 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99693 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47136 * 89.99865 * 25 23 21 27 27 H 1.48499 * 109.46866 * 209.99491 * 25 23 21 28 28 H 1.48497 * 109.47347 * 329.99788 * 25 23 21 29 29 C 1.46927 * 120.63151 * 174.48805 * 12 10 9 30 30 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47102 * 299.99763 * 1 2 3 32 32 H 1.08997 * 109.47025 * 60.00207 * 1 2 3 33 33 H 1.09002 * 109.47163 * 239.99447 * 2 1 3 34 34 H 1.09007 * 109.47034 * 119.99837 * 2 1 3 35 35 H 1.09001 * 109.46647 * 59.99797 * 3 2 1 36 36 H 1.09006 * 109.46921 * 300.00507 * 3 2 1 37 37 H 1.07993 * 126.28889 * 180.24898 * 8 6 5 38 38 H 1.08997 * 109.56091 * 113.76305 * 13 12 10 39 39 H 1.09001 * 109.61547 * 353.33837 * 13 12 10 40 40 H 1.08994 * 109.50149 * 185.44884 * 14 13 12 41 41 H 1.09004 * 109.49384 * 65.38074 * 14 13 12 42 42 H 1.08999 * 109.45678 * 181.36725 * 15 14 13 43 43 H 1.08999 * 109.46453 * 301.32542 * 15 14 13 44 44 H 1.08998 * 109.46709 * 304.99785 * 18 16 15 45 45 H 1.08997 * 109.47267 * 64.99471 * 18 16 15 46 46 H 1.08998 * 109.47408 * 299.99576 * 19 18 16 47 47 H 1.08998 * 109.47432 * 60.00306 * 19 18 16 48 48 H 0.96994 * 120.00183 * 0.02562 * 20 19 18 49 49 H 0.97002 * 120.00081 * 180.02562 * 24 23 21 50 50 H 1.08996 * 109.58589 * 6.64378 * 29 12 10 51 51 H 1.08997 * 109.70289 * 246.28999 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3131 1.4426 1.0565 6 7 5.6508 1.4431 0.6458 7 1 6.4237 1.4436 1.2320 8 6 5.6843 1.4377 -0.6964 9 6 4.3778 1.4428 -1.1422 10 6 3.9327 1.4423 -2.5478 11 8 2.9803 0.7649 -2.8837 12 7 4.5813 2.1927 -3.4603 13 6 5.6557 3.1070 -3.0496 14 6 5.3435 4.5074 -3.5866 15 6 5.1247 4.4328 -5.0994 16 6 3.9312 3.5232 -5.3997 17 1 3.0425 3.9131 -4.9034 18 6 3.6929 3.4754 -6.9103 19 6 2.4264 2.6678 -7.2015 20 7 2.1979 2.6226 -8.6479 21 6 1.1156 1.9500 -9.1494 22 1 0.4302 1.4533 -8.4786 23 6 0.8994 1.9067 -10.5199 24 7 -0.1412 1.2607 -11.0019 25 14 2.0852 2.7653 -11.6801 26 1 3.1644 1.8231 -12.0712 27 1 1.3545 3.2120 -12.8932 28 1 2.6794 3.9430 -10.9982 29 6 4.2277 2.1115 -4.8840 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.5703 1.4328 -1.3137 38 1 6.6050 2.7619 -3.4591 39 1 5.7143 3.1375 -1.9616 40 1 6.1789 5.1738 -3.3722 41 1 4.4418 4.8882 -3.1068 42 1 4.9263 5.4320 -5.4872 43 1 6.0179 4.0292 -5.5761 44 1 3.5728 4.4895 -7.2914 45 1 4.5454 3.0026 -7.3979 46 1 2.5465 1.6537 -6.8204 47 1 1.5738 3.1406 -6.7140 48 1 2.8136 3.0684 -9.2504 49 1 -0.2921 1.2301 -11.9596 50 1 3.3443 1.4848 -5.0059 51 1 5.0588 1.6845 -5.4453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267887293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:13 Heat of formation + Delta-G solvation = 4.900062 kcal Electronic energy + Delta-G solvation = -29285.861908 eV Core-core repulsion = 25413.172413 eV Total energy + Delta-G solvation = -3872.689495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55552 -40.77688 -38.72246 -37.08665 -36.19865 -35.00492 -33.52506 -32.60561 -32.56809 -31.46279 -29.15292 -28.12313 -26.65385 -25.72679 -23.90864 -23.48026 -22.92219 -22.22720 -21.57876 -20.82987 -20.18024 -19.62790 -18.61308 -17.75085 -16.98677 -16.66767 -16.33122 -16.05910 -15.95453 -15.82610 -15.43074 -15.32695 -15.13890 -14.90649 -14.74421 -14.50380 -14.20221 -14.15955 -13.98687 -13.70413 -13.66930 -13.08185 -12.99158 -12.86397 -12.61927 -12.50108 -12.30077 -12.20184 -12.08315 -11.97759 -11.89452 -11.83388 -11.68989 -11.52856 -11.51689 -11.18446 -10.94876 -10.87903 -10.50377 -9.82068 -9.49341 -9.31849 -8.03995 -5.38965 0.60751 1.10319 1.37023 1.42953 1.50444 1.75492 2.02865 2.28751 2.48500 3.26556 3.40321 3.51934 3.69203 3.81049 3.90723 3.98147 4.04703 4.09659 4.15251 4.16215 4.32021 4.36005 4.38946 4.45957 4.52598 4.54587 4.59268 4.70336 4.75119 4.79394 4.81057 4.88975 4.92333 4.92563 4.97691 5.07954 5.10156 5.18110 5.25427 5.32243 5.32607 5.36866 5.40614 5.41180 5.54718 5.63441 5.73897 6.19949 6.27719 6.45502 6.58244 7.06509 7.27735 7.81238 8.03847 9.18036 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013607 B = 0.002678 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.319263 B =10453.751102 C =12073.585383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.039 4.039 4 C 0.118 3.882 5 N -0.317 5.317 6 N -0.444 5.444 7 H 0.462 0.538 8 C 0.131 3.869 9 C -0.310 4.310 10 C 0.585 3.415 11 O -0.582 6.582 12 N -0.604 5.604 13 C 0.096 3.904 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.087 4.087 17 H 0.056 0.944 18 C -0.108 4.108 19 C 0.152 3.848 20 N -0.758 5.758 21 C -0.243 4.243 22 H 0.046 0.954 23 C -0.068 4.068 24 N -0.987 5.987 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.294 1.294 28 H -0.247 1.247 29 C 0.117 3.883 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.018 0.982 47 H 0.009 0.991 48 H 0.369 0.631 49 H 0.259 0.741 50 H 0.059 0.941 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.061 7.012 27.512 35.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.078 4.078 4 C -0.049 4.049 5 N -0.140 5.140 6 N -0.151 5.151 7 H 0.311 0.689 8 C -0.022 4.022 9 C -0.325 4.325 10 C 0.374 3.626 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.025 4.025 14 C -0.168 4.168 15 C -0.147 4.147 16 C -0.107 4.107 17 H 0.074 0.926 18 C -0.146 4.146 19 C 0.026 3.974 20 N -0.404 5.404 21 C -0.374 4.374 22 H 0.064 0.936 23 C -0.259 4.259 24 N -0.637 5.637 25 Si 0.791 3.209 26 H -0.200 1.200 27 H -0.220 1.220 28 H -0.171 1.171 29 C -0.005 4.005 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.247 0.753 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.036 0.964 47 H 0.027 0.973 48 H 0.202 0.798 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.428 6.549 28.674 36.391 hybrid contribution -0.057 -0.064 -1.795 1.797 sum 21.371 6.486 26.880 34.947 Atomic orbital electron populations 1.21727 0.94547 1.02217 1.02009 1.21328 0.96663 0.95117 1.01498 1.20046 0.86076 0.98635 1.03070 1.22448 0.97116 0.96022 0.89327 1.77097 0.87709 1.26884 1.22297 1.46127 1.07337 1.55791 1.05834 0.68934 1.23652 0.98611 0.94403 0.85568 1.20172 0.94067 1.25133 0.93102 1.17758 0.81472 0.78642 0.84681 1.90790 1.29587 1.44667 1.81219 1.48041 1.37293 1.41649 1.06620 1.22267 0.89770 0.88755 1.01708 1.21907 1.02861 0.96775 0.95274 1.21563 0.97099 0.99396 0.96616 1.21341 0.99596 0.95484 0.94257 0.92586 1.21667 0.96624 1.00503 0.95848 1.20840 0.96250 0.97379 0.82973 1.42693 1.29593 1.64495 1.03592 1.19044 1.01940 1.24852 0.91576 0.93564 1.25659 1.00135 1.01662 0.98468 1.69919 1.31899 1.49064 1.12810 0.85257 0.78324 0.79303 0.77973 1.19983 1.22038 1.17086 1.21631 1.01217 0.97356 0.80344 0.92135 0.91204 0.93600 0.93370 0.91695 0.89123 0.91413 0.75286 0.88334 0.88141 0.87710 0.93075 0.90998 0.90008 0.90783 0.90393 0.96444 0.97283 0.79761 0.93199 0.92276 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 3 C -0.04 -0.88 5.28 29.85 0.16 -0.72 16 4 C 0.12 2.61 6.51 43.51 0.28 2.89 16 5 N -0.32 -6.00 12.63 -46.68 -0.59 -6.59 16 6 N -0.44 -4.31 7.29 -56.32 -0.41 -4.72 16 7 H 0.46 0.69 8.96 -213.43 -1.91 -1.22 16 8 C 0.13 1.29 9.63 84.27 0.81 2.10 16 9 C -0.31 -6.25 5.22 -20.15 -0.11 -6.35 16 10 C 0.58 15.52 7.34 86.67 0.64 16.16 16 11 O -0.58 -21.43 15.45 -4.06 -0.06 -21.49 16 12 N -0.60 -12.56 2.97 -822.77 -2.45 -15.00 16 13 C 0.10 1.01 5.47 86.36 0.47 1.48 16 14 C -0.13 -1.43 6.08 30.67 0.19 -1.24 16 15 C -0.11 -1.60 5.17 30.62 0.16 -1.44 16 16 C -0.09 -2.01 2.34 -10.71 -0.03 -2.04 16 17 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 18 C -0.11 -3.05 4.80 30.59 0.15 -2.91 16 19 C 0.15 6.23 6.02 86.38 0.52 6.75 16 20 N -0.76 -37.56 5.41 -343.45 -1.86 -39.42 16 21 C -0.24 -14.86 10.47 84.03 0.88 -13.98 16 22 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 24 N -0.99 -65.84 13.97 21.65 0.30 -65.54 16 25 Si 0.97 46.36 27.74 68.60 1.90 48.27 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.25 -10.49 6.52 99.48 0.65 -9.84 16 29 C 0.12 2.94 5.34 86.36 0.46 3.40 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.39 7.66 -2.39 -0.02 1.37 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.77 7.80 -2.38 -0.02 1.75 16 37 H 0.23 0.07 7.32 -2.91 -0.02 0.05 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.75 4.79 -2.39 -0.01 0.74 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.02 0.77 6.70 -2.39 -0.02 0.75 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.37 16.80 5.53 -92.71 -0.51 16.29 16 49 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 50 H 0.06 2.01 5.72 -2.39 -0.01 2.00 16 51 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -87.11 400.17 1.24 -85.88 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -1.55 Total: 22.88 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.94 Total: -4.26 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -5.00 Total: -131.27 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.06 Total: -21.49 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.27 kcal Total: -87.11 1.24 -85.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267887293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.778 kcal (2) G-P(sol) polarization free energy of solvation -87.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds