Wall clock time and date at job start Tue Mar 31 2020 19:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47011 * 2 1 4 4 C 1.50700 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.35367 * 126.38194 * 275.34784 * 4 3 2 6 6 C 1.41509 * 105.49885 * 180.14086 * 5 4 3 7 7 C 1.47709 * 126.51365 * 179.84282 * 6 5 4 8 8 O 1.21566 * 120.00472 * 353.78564 * 7 6 5 9 9 N 1.34784 * 119.99613 * 173.79137 * 7 6 5 10 10 C 1.46918 * 120.63141 * 4.64387 * 9 7 6 11 11 C 1.53192 * 108.78180 * 233.63193 * 10 9 7 12 12 C 1.53037 * 109.31169 * 305.37110 * 11 10 9 13 13 C 1.53048 * 109.54012 * 61.35847 * 12 11 10 14 14 H 1.09004 * 109.49530 * 178.68764 * 13 12 11 15 15 C 1.52998 * 109.49489 * 58.58715 * 13 12 11 16 16 C 1.46925 * 120.62614 * 184.67323 * 9 7 6 17 17 H 1.09009 * 109.58553 * 246.29397 * 16 9 7 18 18 C 1.53001 * 109.59174 * 6.57929 * 16 9 7 19 19 N 1.46506 * 109.46865 * 286.69898 * 18 16 9 20 20 C 1.36930 * 119.99713 * 184.72046 * 19 18 16 21 21 H 1.08004 * 120.00262 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99829 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00221 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00082 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46862 * 90.00204 * 24 22 20 26 26 H 1.48501 * 109.47193 * 210.00337 * 24 22 20 27 27 H 1.48494 * 109.47143 * 330.00255 * 24 22 20 28 28 N 1.31807 * 106.96282 * 359.57896 * 6 5 4 29 29 N 1.28464 * 110.07300 * 0.26216 * 28 6 5 30 30 H 0.97005 * 124.88012 * 179.97438 * 29 28 6 31 31 H 1.08994 * 109.47637 * 300.00905 * 1 2 3 32 32 H 1.09006 * 109.46796 * 60.00797 * 1 2 3 33 33 H 1.09005 * 109.46912 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47637 * 239.99095 * 2 1 3 35 35 H 1.09006 * 109.46796 * 119.99203 * 2 1 3 36 36 H 1.08993 * 109.47034 * 59.99533 * 3 2 1 37 37 H 1.08997 * 109.46750 * 299.99048 * 3 2 1 38 38 H 1.07995 * 127.25316 * 359.97438 * 5 4 3 39 39 H 1.08998 * 109.58684 * 353.42452 * 10 9 7 40 40 H 1.09006 * 109.58649 * 113.84672 * 10 9 7 41 41 H 1.09003 * 109.49393 * 65.31707 * 11 10 9 42 42 H 1.08990 * 109.50292 * 185.41744 * 11 10 9 43 43 H 1.08992 * 109.46400 * 181.38336 * 12 11 10 44 44 H 1.09003 * 109.46168 * 301.33987 * 12 11 10 45 45 H 1.08995 * 109.47508 * 300.16138 * 15 13 12 46 46 H 1.09003 * 109.46872 * 60.16383 * 15 13 12 47 47 H 1.09004 * 109.46958 * 180.16244 * 15 13 12 48 48 H 1.08994 * 109.46808 * 46.69750 * 18 16 9 49 49 H 1.08998 * 109.46808 * 166.70139 * 18 16 9 50 50 H 0.97003 * 119.99805 * 4.72788 * 19 18 16 51 51 H 0.96996 * 120.00411 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3495 1.3411 1.0861 6 6 5.6718 1.3913 0.5847 7 6 6.9158 1.3218 1.3781 8 8 6.8632 1.3239 2.5926 9 7 8.1094 1.2561 0.7554 10 6 8.1968 1.3548 -0.7079 11 6 8.9728 0.1452 -1.2384 12 6 10.3279 0.0638 -0.5318 13 6 10.1109 -0.1229 0.9716 14 1 11.0763 -0.2041 1.4712 15 6 9.2997 -1.3969 1.2161 16 6 9.3477 1.0837 1.5271 17 1 9.9618 1.9799 1.4376 18 6 9.0057 0.8412 2.9985 19 7 8.5514 2.0940 3.6072 20 6 8.2804 2.1447 4.9484 21 1 8.4020 1.2613 5.5577 22 6 7.8495 3.3316 5.5250 23 7 7.5895 3.3806 6.8143 24 14 7.6400 4.8598 4.4714 25 1 6.2554 4.9063 3.9367 26 1 7.8930 6.0684 5.2963 27 1 8.6051 4.8195 3.3435 28 7 5.5823 1.5062 -0.7253 29 7 4.3485 1.5374 -1.0819 30 1 4.0375 1.6180 -1.9972 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6768 1.9562 -0.8901 38 1 4.0448 1.2451 2.1177 39 1 7.1936 1.3610 -1.1342 40 1 8.7181 2.2721 -0.9817 41 1 8.4056 -0.7649 -1.0433 42 1 9.1282 0.2548 -2.3116 43 1 10.8923 -0.7817 -0.9250 44 1 10.8846 0.9845 -0.7067 45 1 8.3352 -1.3153 0.7150 46 1 9.8431 -2.2551 0.8207 47 1 9.1429 -1.5279 2.2868 48 1 8.2144 0.0950 3.0693 49 1 9.8914 0.4826 3.5230 50 1 8.4426 2.8875 3.0599 51 1 7.2887 4.2100 7.2173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268187986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:30 Heat of formation + Delta-G solvation = 65.814929 kcal Electronic energy + Delta-G solvation = -30865.573294 eV Core-core repulsion = 26995.525266 eV Total energy + Delta-G solvation = -3870.048028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.74396 -41.52196 -38.55200 -36.62580 -36.20291 -34.63859 -33.79909 -32.66341 -32.21714 -31.85927 -28.77320 -27.54844 -27.18736 -26.06487 -24.50565 -23.98413 -22.94948 -22.42431 -21.91310 -20.67315 -19.98409 -18.95338 -18.85422 -17.56532 -17.06321 -16.67637 -16.61833 -16.07626 -15.95140 -15.69798 -15.43383 -15.17829 -15.02565 -14.80263 -14.68577 -14.51748 -14.17700 -14.10303 -13.90918 -13.81844 -13.47977 -13.12645 -13.10998 -12.92831 -12.65373 -12.59823 -12.45366 -12.19053 -12.14477 -11.97409 -11.92700 -11.76340 -11.60447 -11.53056 -11.27895 -10.93987 -10.76139 -10.39490 -10.13644 -9.95313 -9.45794 -8.91235 -7.93994 -5.15586 0.57699 1.11348 1.28349 1.35546 1.40598 1.81947 2.21676 2.50417 2.52652 3.32839 3.38144 3.63599 3.65689 3.71443 3.95760 3.97332 4.11751 4.15074 4.19448 4.26190 4.29770 4.39963 4.47754 4.52581 4.61703 4.66559 4.71931 4.77822 4.82537 4.85435 4.90934 4.92699 4.97131 5.02243 5.08350 5.12770 5.21895 5.24007 5.28096 5.30100 5.32696 5.35022 5.43001 5.45934 5.57126 5.80590 5.86357 6.16147 6.29586 6.56872 6.92998 7.18010 7.44856 7.97832 8.16564 9.29855 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008267 B = 0.005004 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.290602 B = 5593.794622 C = 7915.870690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.048 4.048 4 C 0.046 3.954 5 C -0.213 4.213 6 C -0.020 4.020 7 C 0.551 3.449 8 O -0.504 6.504 9 N -0.595 5.595 10 C 0.069 3.931 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.093 4.093 14 H 0.090 0.910 15 C -0.139 4.139 16 C 0.146 3.854 17 H 0.066 0.934 18 C 0.170 3.830 19 N -0.722 5.722 20 C -0.191 4.191 21 H 0.049 0.951 22 C -0.072 4.072 23 N -0.993 5.993 24 Si 0.954 3.046 25 H -0.294 1.294 26 H -0.291 1.291 27 H -0.264 1.264 28 N -0.258 5.258 29 N -0.364 5.364 30 H 0.461 0.539 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.029 0.971 49 H 0.021 0.979 50 H 0.355 0.645 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -8.176 -28.710 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.082 4.082 5 C -0.241 4.241 6 C -0.179 4.179 7 C 0.336 3.664 8 O -0.375 6.375 9 N -0.331 5.331 10 C -0.053 4.053 11 C -0.163 4.163 12 C -0.145 4.145 13 C -0.113 4.113 14 H 0.108 0.892 15 C -0.197 4.197 16 C 0.042 3.958 17 H 0.084 0.916 18 C 0.044 3.956 19 N -0.365 5.365 20 C -0.323 4.323 21 H 0.067 0.933 22 C -0.261 4.261 23 N -0.647 5.647 24 Si 0.783 3.217 25 H -0.221 1.221 26 H -0.218 1.218 27 H -0.190 1.190 28 N -0.095 5.095 29 N -0.080 5.080 30 H 0.310 0.690 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.188 0.812 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.042 -8.189 -28.775 30.735 hybrid contribution -0.796 1.078 0.796 1.559 sum -7.838 -7.111 -27.979 29.913 Atomic orbital electron populations 1.21762 0.94127 1.02309 1.02593 1.21500 0.96872 0.94928 1.02290 1.20376 0.83725 0.98974 1.05561 1.21619 0.96098 1.04291 0.86159 1.21580 0.91289 1.10899 1.00360 1.22078 0.95184 1.10158 0.90516 1.17749 0.82819 0.78907 0.86927 1.91297 1.85719 1.47378 1.13104 1.47851 1.04516 1.72342 1.08356 1.22863 1.06074 0.98583 0.77819 1.21883 0.95957 0.97671 1.00763 1.21546 0.97428 1.03016 0.92544 1.21454 0.98737 0.93164 0.97898 0.89207 1.21797 0.99967 0.97200 1.00704 1.21492 0.85222 0.98795 0.90270 0.91561 1.20887 0.95201 0.88996 0.90550 1.42521 1.80420 1.08630 1.04962 1.18975 1.32995 0.95604 0.84726 0.93301 1.25236 1.03512 1.00625 0.96742 1.69872 1.56222 1.27042 1.11552 0.85400 0.77629 0.80226 0.78396 1.22104 1.21806 1.18952 1.72968 1.01862 1.21292 1.13354 1.43527 1.02341 1.51568 1.10573 0.69024 0.92661 0.91216 0.92331 0.91240 0.93122 0.89203 0.87383 0.84303 0.84380 0.91964 0.92046 0.88602 0.89609 0.91289 0.93495 0.90622 0.94510 0.95374 0.96131 0.81246 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.45 5.92 30.60 0.18 -1.27 16 3 C -0.05 -0.61 5.77 29.85 0.17 -0.43 16 4 C 0.05 0.93 6.48 41.40 0.27 1.20 16 5 C -0.21 -6.67 10.73 22.41 0.24 -6.43 16 6 C -0.02 -0.67 6.90 42.46 0.29 -0.38 16 7 C 0.55 22.17 7.33 86.75 0.64 22.80 16 8 O -0.50 -25.66 10.65 -3.92 -0.04 -25.70 16 9 N -0.60 -19.70 2.41 -798.56 -1.93 -21.63 16 10 C 0.07 1.66 6.32 86.36 0.55 2.21 16 11 C -0.12 -2.26 5.74 30.67 0.18 -2.09 16 12 C -0.11 -1.96 5.43 30.62 0.17 -1.80 16 13 C -0.09 -2.32 2.77 -10.71 -0.03 -2.35 16 14 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 15 C -0.14 -3.60 8.24 71.98 0.59 -3.00 16 16 C 0.15 4.96 2.61 44.98 0.12 5.08 16 17 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 18 C 0.17 7.65 3.94 86.38 0.34 7.99 16 19 N -0.72 -39.58 3.01 -343.45 -1.03 -40.61 16 20 C -0.19 -12.40 10.19 84.03 0.86 -11.55 16 21 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 22 C -0.07 -4.73 5.50 84.86 0.47 -4.26 16 23 N -0.99 -69.72 13.97 21.65 0.30 -69.41 16 24 Si 0.95 52.70 27.74 68.60 1.90 54.60 16 25 H -0.29 -16.36 7.11 99.48 0.71 -15.65 16 26 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 27 H -0.26 -13.54 6.52 99.48 0.65 -12.89 16 28 N -0.26 -6.40 8.56 -48.17 -0.41 -6.81 16 29 N -0.36 -6.27 6.83 -47.93 -0.33 -6.59 16 30 H 0.46 3.50 8.96 -219.99 -1.97 1.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.14 3.27 3.70 -88.22 -0.33 2.95 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 41 H 0.06 1.22 6.33 -2.39 -0.02 1.21 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.30 5.97 -2.39 -0.01 1.28 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.12 6.65 -2.38 -0.02 1.10 16 48 H 0.03 1.41 5.33 -2.39 -0.01 1.39 16 49 H 0.02 0.94 8.09 -2.39 -0.02 0.92 16 50 H 0.36 19.34 5.13 -92.71 -0.48 18.87 16 51 H 0.25 16.88 8.31 -92.71 -0.77 16.11 16 Total: -1.00 -87.50 386.28 2.32 -85.18 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -1.88 Total: 26.00 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.74 Total: 4.98 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -3.40 Total: -145.06 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.04 Total: -25.70 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 1.90 Total: 54.60 kcal Total: -87.50 2.32 -85.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268187986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.992 kcal (2) G-P(sol) polarization free energy of solvation -87.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds