Wall clock time and date at job start Tue Mar 31 2020 20:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 C 1.50704 * 109.46780 * 120.00025 * 2 1 3 5 5 N 1.30505 * 125.64659 * 300.03745 * 4 2 1 6 6 C 1.34132 * 109.25179 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02077 * 359.73788 * 6 5 4 8 8 N 1.35039 * 125.64839 * 120.00286 * 4 2 1 9 9 C 1.46497 * 126.39982 * 0.03350 * 8 4 2 10 10 C 1.50694 * 109.47115 * 84.99985 * 9 8 4 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 H 1.08994 * 110.01986 * 326.38677 * 13 12 10 15 15 C 1.54266 * 110.03605 * 87.83227 * 13 12 10 16 16 C 1.54890 * 104.19660 * 95.67374 * 15 13 12 17 17 C 1.54891 * 102.74757 * 37.93972 * 16 15 13 18 18 C 1.53876 * 110.03096 * 204.99947 * 13 12 10 19 19 H 1.08996 * 110.03126 * 359.97438 * 18 13 12 20 20 C 1.52999 * 110.03382 * 121.42843 * 18 13 12 21 21 N 1.46502 * 109.47004 * 184.99936 * 20 18 13 22 22 C 1.36937 * 119.99832 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00406 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00044 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00123 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47187 * 89.99657 * 26 24 22 28 28 H 1.48502 * 109.47338 * 209.99976 * 26 24 22 29 29 H 1.48500 * 109.46956 * 329.99739 * 26 24 22 30 30 H 1.08996 * 109.47001 * 300.00322 * 1 2 3 31 31 H 1.09000 * 109.46743 * 60.00155 * 1 2 3 32 32 H 1.08993 * 109.47030 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47001 * 239.99678 * 2 1 3 34 34 H 1.08997 * 109.47372 * 300.00059 * 3 2 1 35 35 H 1.09005 * 109.47390 * 59.99912 * 3 2 1 36 36 H 1.09004 * 109.47208 * 179.97438 * 3 2 1 37 37 H 1.08001 * 125.98750 * 180.02562 * 6 5 4 38 38 H 1.08002 * 126.59341 * 180.27897 * 7 6 5 39 39 H 1.08998 * 109.46734 * 325.00102 * 9 8 4 40 40 H 1.09002 * 109.47081 * 204.99873 * 9 8 4 41 41 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 42 42 H 1.09004 * 110.48936 * 214.34967 * 15 13 12 43 43 H 1.08997 * 110.48426 * 336.99480 * 15 13 12 44 44 H 1.08999 * 110.75395 * 279.63150 * 16 15 13 45 45 H 1.08996 * 110.91591 * 156.33352 * 16 15 13 46 46 H 1.08998 * 110.48557 * 203.37620 * 17 16 15 47 47 H 1.09002 * 110.47829 * 80.74065 * 17 16 15 48 48 H 1.08999 * 109.47057 * 305.00177 * 20 18 13 49 49 H 1.09000 * 109.47162 * 65.00038 * 20 18 13 50 50 H 0.96993 * 120.00283 * 0.02562 * 21 20 18 51 51 H 0.96997 * 119.99979 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4638 6 6 2.3924 -1.2216 3.2959 7 6 3.0353 -2.1401 2.5499 8 7 2.8120 -1.8130 1.2396 9 6 3.3191 -2.5288 0.0663 10 6 4.5914 -1.8761 -0.4092 11 8 5.0310 -0.9079 0.1742 12 7 5.2402 -2.3676 -1.4835 13 6 6.4738 -1.7294 -1.9493 14 1 6.4254 -0.6541 -1.7779 15 6 7.6896 -2.3287 -1.2128 16 6 8.2137 -3.4244 -2.1739 17 6 8.0173 -2.7787 -3.5680 18 6 6.6822 -2.0155 -3.4468 19 1 5.8658 -2.6295 -3.8268 20 6 6.7573 -0.7010 -4.2261 21 7 6.8358 -0.9875 -5.6607 22 6 6.9112 0.0413 -6.5612 23 1 6.9133 1.0639 -6.2140 24 6 6.9850 -0.2302 -7.9205 25 7 7.0581 0.7587 -8.7861 26 14 6.9807 -1.9989 -8.5213 27 1 5.5824 -2.4363 -8.7626 28 1 7.7543 -2.0942 -9.7854 29 1 7.6023 -2.8722 -7.4936 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1301 1.4425 0.0005 37 1 2.3659 -1.1859 4.3750 38 1 3.6173 -2.9734 2.9152 39 1 2.5746 -2.4960 -0.7291 40 1 3.5206 -3.5664 0.3328 41 1 4.8879 -3.1412 -1.9507 42 1 8.4519 -1.5663 -1.0516 43 1 7.3821 -2.7686 -0.2642 44 1 7.6204 -4.3342 -2.0827 45 1 9.2677 -3.6322 -1.9894 46 1 7.9491 -3.5470 -4.3381 47 1 8.8325 -2.0890 -3.7871 48 1 5.8667 -0.1065 -4.0224 49 1 7.6431 -0.1457 -3.9175 50 1 6.8336 -1.9059 -5.9726 51 1 7.1100 0.5690 -9.7360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268291597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:03 Heat of formation + Delta-G solvation = 24.607170 kcal Electronic energy + Delta-G solvation = -29391.670714 eV Core-core repulsion = 25519.835783 eV Total energy + Delta-G solvation = -3871.834930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38136 -40.21484 -38.25312 -35.50603 -34.79293 -34.22992 -33.64692 -31.59529 -29.32775 -29.07844 -28.68637 -27.26986 -27.08021 -24.62796 -23.04767 -22.07975 -21.73166 -21.28756 -20.24396 -20.07855 -19.20971 -17.95933 -17.55612 -17.26523 -16.42639 -15.91027 -15.30816 -15.13674 -14.75653 -14.56281 -14.47431 -14.38485 -13.97798 -13.79087 -13.73080 -13.55675 -13.27053 -13.01885 -12.87237 -12.70043 -12.28355 -12.25248 -11.97657 -11.65514 -11.61929 -11.33059 -11.19989 -11.12050 -11.03516 -10.92433 -10.81288 -10.63036 -10.52125 -10.43578 -10.16303 -10.07373 -9.65168 -9.61529 -9.25661 -8.94702 -8.47788 -7.28603 -5.80915 -3.16997 1.77435 2.22727 2.36207 2.98067 3.07024 3.31157 3.33061 3.40128 4.16063 4.22469 4.26894 4.42759 4.47993 4.53933 4.54479 4.60622 4.83540 4.85880 4.96910 5.07095 5.20065 5.31800 5.37704 5.42628 5.49254 5.51290 5.53540 5.58721 5.62880 5.66238 5.66484 5.75607 5.76800 5.81996 5.86367 5.94037 6.01964 6.04971 6.15007 6.21381 6.22612 6.35395 6.38666 6.58904 6.61866 6.69490 6.93018 7.19069 7.87677 7.95072 7.99055 8.37837 9.16568 9.88464 10.08112 11.37545 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002785 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.535959 B =10052.319109 C =11403.387098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.140 4.140 4 C 0.232 3.768 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.055 4.055 8 N -0.442 5.442 9 C 0.082 3.918 10 C 0.494 3.506 11 O -0.516 6.516 12 N -0.715 5.715 13 C 0.148 3.852 14 H 0.096 0.904 15 C -0.129 4.129 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.107 4.107 19 H 0.077 0.923 20 C 0.166 3.834 21 N -0.754 5.754 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.885 3.115 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.400 0.600 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.026 0.974 49 H 0.030 0.970 50 H 0.360 0.640 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 -12.043 21.150 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.031 4.031 5 N -0.205 5.205 6 C -0.174 4.174 7 C -0.187 4.187 8 N -0.125 5.125 9 C -0.045 4.045 10 C 0.277 3.723 11 O -0.390 6.390 12 N -0.367 5.367 13 C 0.043 3.957 14 H 0.114 0.886 15 C -0.168 4.168 16 C -0.162 4.162 17 C -0.154 4.154 18 C -0.126 4.126 19 H 0.096 0.904 20 C 0.038 3.962 21 N -0.399 5.399 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.192 4.192 25 N -0.581 5.581 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.186 0.814 38 H 0.188 0.812 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.193 0.807 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.579 -10.491 21.635 25.529 hybrid contribution 0.538 -2.512 -1.048 2.774 sum -8.040 -13.003 20.587 25.643 Atomic orbital electron populations 1.21791 0.93044 1.01962 1.02930 1.19558 0.96458 0.96303 0.90577 1.21762 1.01776 0.93695 1.02535 1.23211 0.96064 0.88095 0.95705 1.70192 1.24520 1.26816 0.98932 1.22221 1.01421 0.94253 0.99496 1.22589 1.08440 1.05074 0.82585 1.44834 1.38588 1.23276 1.05759 1.21688 0.96090 0.97512 0.89224 1.20660 0.85583 0.84847 0.81205 1.90804 1.66959 1.25874 1.55365 1.46130 1.26528 1.33630 1.30414 1.21686 0.82447 0.98498 0.93071 0.88607 1.22729 0.97330 0.98643 0.98073 1.22531 1.00801 0.97592 0.95309 1.22426 0.97311 0.99360 0.96305 1.22282 0.98496 0.98925 0.92897 0.90448 1.20706 0.98755 0.92543 0.84155 1.42663 1.90876 1.05236 1.01169 1.19060 1.42815 0.88709 0.86874 0.89231 1.24680 1.02028 0.96732 0.95716 1.69703 1.57258 1.29735 1.01447 0.86542 0.77670 0.86066 0.78195 1.21147 1.21718 1.20342 0.91298 0.91661 0.92931 0.90558 0.91767 0.91513 0.92131 0.81448 0.81186 0.86095 0.86030 0.76542 0.90554 0.91744 0.91981 0.91571 0.91553 0.90454 0.95562 0.95182 0.80701 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 4 C 0.23 2.81 6.40 -155.41 -0.99 1.82 16 5 N -0.49 -6.61 11.25 -10.81 -0.12 -6.73 16 6 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 7 C -0.06 -0.55 11.58 -16.56 -0.19 -0.75 16 8 N -0.44 -4.59 2.24 -115.19 -0.26 -4.85 16 9 C 0.08 0.59 6.17 -5.20 -0.03 0.56 16 10 C 0.49 5.14 7.90 -10.98 -0.09 5.05 16 11 O -0.52 -7.83 16.08 5.56 0.09 -7.74 16 12 N -0.71 -6.48 5.03 -52.73 -0.27 -6.75 16 13 C 0.15 1.72 2.90 -66.82 -0.19 1.53 16 14 H 0.10 1.36 7.10 -51.93 -0.37 0.99 16 15 C -0.13 -1.37 6.54 -25.07 -0.16 -1.54 16 16 C -0.12 -1.23 6.91 -24.74 -0.17 -1.41 16 17 C -0.12 -1.47 6.08 -25.07 -0.15 -1.62 16 18 C -0.11 -1.41 2.73 -89.50 -0.24 -1.65 16 19 H 0.08 0.96 7.61 -51.93 -0.40 0.57 16 20 C 0.17 3.03 5.31 -4.04 -0.02 3.00 16 21 N -0.75 -17.13 5.25 -59.91 -0.31 -17.45 16 22 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 25 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 26 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.72 6.85 -51.93 -0.36 0.36 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.61 7.28 -51.93 -0.38 0.23 16 40 H 0.12 0.48 8.13 -51.93 -0.42 0.05 16 41 H 0.40 2.49 8.32 -40.82 -0.34 2.15 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.10 7.76 -51.93 -0.40 0.70 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 50 H 0.36 7.89 5.41 -40.82 -0.22 7.67 16 51 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 410.80 15.07 6.19 6.19 Total: -1.00 -36.11 410.80 -9.76 -45.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.80 Total: 7.96 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.33 Total: -4.97 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.18 Total: -64.09 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.11 -9.76 -45.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268291597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.470 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds