Wall clock time and date at job start Tue Mar 31 2020 20:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47083 * 2 1 4 4 C 1.50704 * 109.46780 * 120.00025 * 2 1 3 5 5 N 1.30505 * 125.64659 * 300.03745 * 4 2 1 6 6 C 1.34132 * 109.25179 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02077 * 359.73788 * 6 5 4 8 8 N 1.35039 * 125.64839 * 120.00286 * 4 2 1 9 9 C 1.46497 * 126.39982 * 0.03350 * 8 4 2 10 10 C 1.50694 * 109.47115 * 84.99985 * 9 8 4 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 H 1.08994 * 110.01986 * 326.38677 * 13 12 10 15 15 C 1.54266 * 110.03605 * 87.83227 * 13 12 10 16 16 C 1.54890 * 104.19660 * 95.67374 * 15 13 12 17 17 C 1.54891 * 102.74757 * 37.93972 * 16 15 13 18 18 C 1.53876 * 110.03096 * 204.99947 * 13 12 10 19 19 H 1.08996 * 110.03126 * 359.97438 * 18 13 12 20 20 C 1.52999 * 110.03382 * 121.42843 * 18 13 12 21 21 N 1.46502 * 109.47004 * 184.99936 * 20 18 13 22 22 C 1.36937 * 119.99832 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00406 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99964 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00044 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00123 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47187 * 89.99657 * 26 24 22 28 28 H 1.48502 * 109.47338 * 209.99976 * 26 24 22 29 29 H 1.48500 * 109.46956 * 329.99739 * 26 24 22 30 30 H 1.08996 * 109.47001 * 300.00322 * 1 2 3 31 31 H 1.09000 * 109.46743 * 60.00155 * 1 2 3 32 32 H 1.08993 * 109.47030 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47001 * 239.99678 * 2 1 3 34 34 H 1.08997 * 109.47372 * 300.00059 * 3 2 1 35 35 H 1.09005 * 109.47390 * 59.99912 * 3 2 1 36 36 H 1.09004 * 109.47208 * 179.97438 * 3 2 1 37 37 H 1.08001 * 125.98750 * 180.02562 * 6 5 4 38 38 H 1.08002 * 126.59341 * 180.27897 * 7 6 5 39 39 H 1.08998 * 109.46734 * 325.00102 * 9 8 4 40 40 H 1.09002 * 109.47081 * 204.99873 * 9 8 4 41 41 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 42 42 H 1.09004 * 110.48936 * 214.34967 * 15 13 12 43 43 H 1.08997 * 110.48426 * 336.99480 * 15 13 12 44 44 H 1.08999 * 110.75395 * 279.63150 * 16 15 13 45 45 H 1.08996 * 110.91591 * 156.33352 * 16 15 13 46 46 H 1.08998 * 110.48557 * 203.37620 * 17 16 15 47 47 H 1.09002 * 110.47829 * 80.74065 * 17 16 15 48 48 H 1.08999 * 109.47057 * 305.00177 * 20 18 13 49 49 H 1.09000 * 109.47162 * 65.00038 * 20 18 13 50 50 H 0.96993 * 120.00283 * 0.02562 * 21 20 18 51 51 H 0.96997 * 119.99979 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7853 -0.3624 2.4638 6 6 2.3924 -1.2216 3.2959 7 6 3.0353 -2.1401 2.5499 8 7 2.8120 -1.8130 1.2396 9 6 3.3191 -2.5288 0.0663 10 6 4.5914 -1.8761 -0.4092 11 8 5.0310 -0.9079 0.1742 12 7 5.2402 -2.3676 -1.4835 13 6 6.4738 -1.7294 -1.9493 14 1 6.4254 -0.6541 -1.7779 15 6 7.6896 -2.3287 -1.2128 16 6 8.2137 -3.4244 -2.1739 17 6 8.0173 -2.7787 -3.5680 18 6 6.6822 -2.0155 -3.4468 19 1 5.8658 -2.6295 -3.8268 20 6 6.7573 -0.7010 -4.2261 21 7 6.8358 -0.9875 -5.6607 22 6 6.9112 0.0413 -6.5612 23 1 6.9133 1.0639 -6.2140 24 6 6.9850 -0.2302 -7.9205 25 7 7.0581 0.7587 -8.7861 26 14 6.9807 -1.9989 -8.5213 27 1 5.5824 -2.4363 -8.7626 28 1 7.7543 -2.0942 -9.7854 29 1 7.6023 -2.8722 -7.4936 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.1301 1.4425 0.0005 37 1 2.3659 -1.1859 4.3750 38 1 3.6173 -2.9734 2.9152 39 1 2.5746 -2.4960 -0.7291 40 1 3.5206 -3.5664 0.3328 41 1 4.8879 -3.1412 -1.9507 42 1 8.4519 -1.5663 -1.0516 43 1 7.3821 -2.7686 -0.2642 44 1 7.6204 -4.3342 -2.0827 45 1 9.2677 -3.6322 -1.9894 46 1 7.9491 -3.5470 -4.3381 47 1 8.8325 -2.0890 -3.7871 48 1 5.8667 -0.1065 -4.0224 49 1 7.6431 -0.1457 -3.9175 50 1 6.8336 -1.9059 -5.9726 51 1 7.1100 0.5690 -9.7360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268291597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:01 Heat of formation + Delta-G solvation = 0.518565 kcal Electronic energy + Delta-G solvation = -29392.715274 eV Core-core repulsion = 25519.835783 eV Total energy + Delta-G solvation = -3872.879491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.15327 -41.11850 -39.28045 -36.49802 -36.29987 -35.02123 -34.62422 -33.53357 -30.63497 -30.01667 -29.51821 -28.08109 -27.91575 -26.23180 -23.92106 -23.68394 -22.66042 -22.07106 -21.28806 -21.02652 -20.12443 -19.64111 -18.36361 -18.30495 -17.41613 -16.68688 -16.45541 -16.23581 -16.02172 -15.75744 -15.47209 -15.28269 -15.22450 -14.93893 -14.62203 -14.58269 -14.43237 -14.28085 -13.83405 -13.72769 -13.51314 -13.38220 -13.04786 -12.89754 -12.58784 -12.45815 -12.42856 -12.16071 -12.15274 -11.95461 -11.92593 -11.84744 -11.80542 -11.70930 -11.49770 -11.38360 -10.98013 -10.91135 -10.45482 -10.13448 -9.32361 -9.26374 -8.03527 -5.38439 0.99263 1.37248 1.43019 1.45925 1.50645 1.68635 2.20489 2.24783 2.48679 3.26913 3.35448 3.40204 3.57627 3.62121 3.71325 3.79614 3.87586 3.91629 4.07875 4.11879 4.17475 4.33116 4.33602 4.43812 4.47513 4.59073 4.59521 4.63240 4.72213 4.73505 4.76143 4.87469 4.92525 4.95215 4.97671 5.02308 5.03777 5.14273 5.22265 5.24527 5.29673 5.30956 5.40640 5.47526 5.55357 5.73607 5.87584 6.16817 6.19663 6.48395 7.06906 7.15019 7.18665 7.80698 8.03321 9.18268 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002785 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.535959 B =10052.319109 C =11403.387098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 C -0.135 4.135 4 C 0.213 3.787 5 N -0.524 5.524 6 C -0.058 4.058 7 C -0.046 4.046 8 N -0.444 5.444 9 C 0.083 3.917 10 C 0.494 3.506 11 O -0.570 6.570 12 N -0.700 5.700 13 C 0.155 3.845 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.093 4.093 19 H 0.097 0.903 20 C 0.164 3.836 21 N -0.751 5.751 22 C -0.240 4.240 23 H 0.048 0.952 24 C -0.066 4.066 25 N -0.986 5.986 26 Si 0.961 3.039 27 H -0.274 1.274 28 H -0.298 1.298 29 H -0.243 1.243 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.182 0.818 38 H 0.205 0.795 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.419 0.581 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.014 0.986 49 H 0.016 0.984 50 H 0.370 0.630 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -16.750 21.633 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.193 4.193 4 C -0.050 4.050 5 N -0.242 5.242 6 C -0.205 4.205 7 C -0.178 4.178 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.280 3.720 11 O -0.449 6.449 12 N -0.353 5.353 13 C 0.049 3.951 14 H 0.081 0.919 15 C -0.163 4.163 16 C -0.147 4.147 17 C -0.156 4.156 18 C -0.112 4.112 19 H 0.115 0.885 20 C 0.037 3.963 21 N -0.397 5.397 22 C -0.371 4.371 23 H 0.066 0.934 24 C -0.258 4.258 25 N -0.637 5.637 26 Si 0.787 3.213 27 H -0.200 1.200 28 H -0.225 1.225 29 H -0.167 1.167 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.199 0.801 38 H 0.221 0.779 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.257 0.743 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.034 0.966 50 H 0.203 0.797 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.170 -15.256 22.149 28.415 hybrid contribution 0.752 -0.889 -1.137 1.628 sum -8.419 -16.146 21.011 27.804 Atomic orbital electron populations 1.21727 0.91785 1.02574 1.02876 1.19625 0.97470 0.95265 0.90627 1.21699 0.99826 0.95066 1.02681 1.23430 0.96859 0.89036 0.95683 1.70121 1.25898 1.28122 1.00103 1.22656 1.02438 0.94894 1.00472 1.23132 1.07247 1.05133 0.82327 1.45021 1.37923 1.22924 1.06786 1.22019 0.94601 0.98677 0.88995 1.21243 0.86192 0.83992 0.80615 1.90802 1.68552 1.28366 1.57133 1.45912 1.25481 1.33788 1.30119 1.21367 0.84304 0.97160 0.92286 0.91932 1.22665 0.96377 0.98704 0.98551 1.22466 1.01899 0.97711 0.92609 1.22415 0.95743 0.99056 0.98424 1.22123 0.99998 0.96127 0.92980 0.88477 1.20813 0.97372 0.95564 0.82546 1.42567 1.90576 1.04373 1.02163 1.19003 1.41666 0.88400 0.88045 0.93416 1.25617 1.02230 1.02167 0.95749 1.69913 1.59196 1.32825 1.01733 0.85320 0.78177 0.79999 0.77755 1.20020 1.22502 1.16727 0.92719 0.90287 0.91951 0.89358 0.90393 0.92554 0.94928 0.80103 0.77866 0.83444 0.81623 0.74257 0.91802 0.90924 0.89407 0.90662 0.90857 0.92776 0.96831 0.96599 0.79658 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.18 71.98 0.66 -1.51 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.23 16 3 C -0.13 -3.16 9.18 71.98 0.66 -2.50 16 4 C 0.21 5.03 6.40 138.13 0.88 5.92 16 5 N -0.52 -14.36 11.25 -188.12 -2.12 -16.48 16 6 C -0.06 -1.31 11.87 83.52 0.99 -0.31 16 7 C -0.05 -0.83 11.58 83.09 0.96 0.13 16 8 N -0.44 -8.27 2.24 -518.35 -1.16 -9.43 16 9 C 0.08 0.87 6.17 85.63 0.53 1.40 16 10 C 0.49 9.13 7.90 87.65 0.69 9.82 16 11 O -0.57 -17.13 16.08 -3.04 -0.05 -17.18 16 12 N -0.70 -10.53 5.03 -439.11 -2.21 -12.74 16 13 C 0.15 3.37 2.90 45.72 0.13 3.51 16 14 H 0.06 1.82 7.10 -2.39 -0.02 1.81 16 15 C -0.12 -2.38 6.54 31.67 0.21 -2.17 16 16 C -0.11 -1.75 6.91 31.89 0.22 -1.53 16 17 C -0.12 -2.66 6.08 31.67 0.19 -2.47 16 18 C -0.09 -2.26 2.73 -10.07 -0.03 -2.29 16 19 H 0.10 2.03 7.61 -2.39 -0.02 2.01 16 20 C 0.16 6.00 5.31 86.38 0.46 6.46 16 21 N -0.75 -33.65 5.25 -343.45 -1.80 -35.46 16 22 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 23 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 25 N -0.99 -63.22 13.97 21.65 0.30 -62.91 16 26 Si 0.96 43.61 27.74 68.60 1.90 45.51 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.24 -9.56 6.52 99.48 0.65 -8.91 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.52 6.85 -2.39 -0.02 1.51 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.15 0.81 7.28 -2.39 -0.02 0.80 16 40 H 0.17 0.32 8.13 -2.39 -0.02 0.30 16 41 H 0.42 3.19 8.32 -92.71 -0.77 2.42 16 42 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.47 7.76 -2.39 -0.02 1.46 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 50 H 0.37 15.18 5.41 -92.71 -0.50 14.68 16 51 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -84.06 410.80 2.32 -81.74 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.41 Total: 28.95 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 7.87 Total: -2.00 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -6.99 Total: -137.02 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.05 Total: -17.18 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Total: -84.06 2.32 -81.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268291597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.254 kcal (2) G-P(sol) polarization free energy of solvation -84.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds