Wall clock time and date at job start Tue Mar 31 2020 20:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.50694 * 109.47311 * 120.00355 * 2 1 3 5 5 N 1.30505 * 125.64661 * 300.04026 * 4 2 1 6 6 C 1.34129 * 109.25357 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02124 * 359.73514 * 6 5 4 8 8 N 1.35038 * 125.65410 * 119.99740 * 4 2 1 9 9 C 1.46499 * 126.39520 * 0.03670 * 8 4 2 10 10 C 1.50704 * 109.47262 * 85.00311 * 9 8 4 11 11 O 1.21287 * 119.99332 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00324 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00037 * 185.26811 * 12 10 9 14 14 C 1.52997 * 109.47362 * 173.94715 * 13 12 10 15 15 C 1.53011 * 109.46858 * 53.95365 * 13 12 10 16 16 N 1.46496 * 109.47052 * 59.99778 * 15 13 12 17 17 C 1.36936 * 119.99711 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00228 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99820 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47251 * 89.99715 * 21 19 17 23 23 H 1.48505 * 109.47321 * 209.99468 * 21 19 17 24 24 H 1.48499 * 109.47531 * 329.99641 * 21 19 17 25 25 C 1.52997 * 109.47448 * 293.95345 * 13 12 10 26 26 C 1.52993 * 117.50152 * 3.03049 * 25 13 12 27 27 C 1.52993 * 60.00224 * 252.51452 * 26 25 13 28 28 H 1.08999 * 109.46805 * 300.00034 * 1 2 3 29 29 H 1.09004 * 109.46615 * 59.99960 * 1 2 3 30 30 H 1.08997 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47264 * 240.00070 * 2 1 3 32 32 H 1.08999 * 109.47337 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.47177 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47699 * 299.99742 * 3 2 1 35 35 H 1.08006 * 125.98352 * 180.02562 * 6 5 4 36 36 H 1.08003 * 126.58953 * 180.28228 * 7 6 5 37 37 H 1.08990 * 109.47389 * 325.00182 * 9 8 4 38 38 H 1.09002 * 109.47222 * 204.99675 * 9 8 4 39 39 H 0.96996 * 119.99667 * 5.27447 * 12 10 9 40 40 H 1.09009 * 109.47158 * 300.01020 * 14 13 12 41 41 H 1.08994 * 109.47770 * 180.02562 * 14 13 12 42 42 H 1.09010 * 109.46885 * 59.99861 * 14 13 12 43 43 H 1.08997 * 109.46725 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46812 * 299.99569 * 15 13 12 45 45 H 0.96999 * 120.00148 * 359.97438 * 16 15 13 46 46 H 0.97004 * 120.00544 * 180.02562 * 20 19 17 47 47 H 1.09008 * 115.54988 * 148.74286 * 25 13 12 48 48 H 1.09004 * 117.49511 * 0.02562 * 26 25 13 49 49 H 1.08996 * 117.50057 * 145.01874 * 26 25 13 50 50 H 1.09003 * 117.49840 * 252.51464 * 27 26 25 51 51 H 1.09002 * 117.50228 * 107.49102 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7854 -0.3625 2.4637 6 6 2.3925 -1.2216 3.2957 7 6 3.0355 -2.1401 2.5497 8 7 2.8120 -1.8130 1.2394 9 6 3.3190 -2.5288 0.0661 10 6 4.5914 -1.8761 -0.4095 11 8 5.0310 -0.9080 0.1741 12 7 5.2407 -2.3682 -1.4831 13 6 6.5357 -1.8075 -1.8764 14 6 7.1232 -2.6349 -3.0214 15 6 7.4902 -1.8412 -0.6809 16 7 7.6714 -3.2263 -0.2396 17 6 8.4884 -3.5048 0.8234 18 1 8.9996 -2.7035 1.3362 19 6 8.6606 -4.8174 1.2412 20 7 8.0381 -5.7940 0.6160 21 14 9.7757 -5.1974 2.6908 22 1 8.9840 -5.1631 3.9467 23 1 10.3705 -6.5471 2.5174 24 1 10.8592 -4.1843 2.7609 25 6 6.3465 -0.3609 -2.3373 26 6 4.9397 0.2328 -2.2414 27 6 5.5272 -0.1258 -3.6078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6768 1.9564 -0.8899 35 1 2.3661 -1.1860 4.3748 36 1 3.6175 -2.9734 2.9150 37 1 2.5746 -2.4960 -0.7293 38 1 3.5206 -3.5664 0.3325 39 1 4.8505 -3.0934 -1.9955 40 1 7.2580 -3.6656 -2.6930 41 1 8.0870 -2.2181 -3.3137 42 1 6.4432 -2.6110 -3.8730 43 1 8.4539 -1.4245 -0.9737 44 1 7.0717 -1.2517 0.1348 45 1 7.2120 -3.9460 -0.6999 46 1 8.1580 -6.7112 0.9082 47 1 7.1884 0.3059 -2.1507 48 1 4.1491 -0.4071 -1.8495 49 1 4.8558 1.2904 -1.9915 50 1 5.8298 0.6960 -4.2569 51 1 5.1229 -1.0017 -4.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269637168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:46 Heat of formation + Delta-G solvation = 71.850873 kcal Electronic energy + Delta-G solvation = -31132.165809 eV Core-core repulsion = 27262.379519 eV Total energy + Delta-G solvation = -3869.786290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04568 -40.34385 -37.32965 -35.36881 -35.04374 -33.81000 -33.42251 -31.51821 -29.72617 -28.69668 -27.47348 -27.18378 -26.05597 -23.79329 -22.83032 -22.16492 -21.69254 -21.32300 -20.79726 -19.14183 -18.95548 -17.43288 -17.29819 -17.11823 -16.03964 -15.44740 -15.22637 -14.86059 -14.47644 -14.38253 -14.18390 -13.97594 -13.55861 -13.40427 -13.37945 -13.17644 -12.93309 -12.83088 -12.53992 -12.17662 -12.16779 -12.14708 -11.90753 -11.51512 -11.33596 -11.22027 -11.18284 -10.95517 -10.91956 -10.84459 -10.79113 -10.28163 -10.16624 -10.03212 -9.77473 -9.73539 -9.68841 -9.15880 -8.82757 -8.69291 -8.12647 -6.89838 -5.79747 -3.05761 2.15439 2.75406 2.79514 3.36694 3.41740 3.43730 3.47941 3.49363 3.96667 4.39252 4.56325 4.62183 4.67167 4.77728 4.80767 4.99086 5.05226 5.10398 5.10862 5.13827 5.27460 5.35930 5.48303 5.57600 5.58633 5.64182 5.65893 5.71378 5.71598 5.84100 5.86635 5.91656 5.96531 5.98349 6.09944 6.18074 6.19922 6.22881 6.30386 6.31232 6.48967 6.51033 6.56234 6.82922 6.97238 7.05706 7.30549 7.69821 7.72233 8.30533 8.40084 8.43942 9.51930 10.08706 10.44773 11.43416 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004498 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.946809 B = 6223.354020 C = 8114.840266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.004 4.004 3 C -0.138 4.138 4 C 0.221 3.779 5 N -0.489 5.489 6 C -0.034 4.034 7 C -0.039 4.039 8 N -0.435 5.435 9 C 0.080 3.920 10 C 0.506 3.494 11 O -0.500 6.500 12 N -0.712 5.712 13 C 0.203 3.797 14 C -0.147 4.147 15 C 0.141 3.859 16 N -0.726 5.726 17 C -0.230 4.230 18 H 0.068 0.932 19 C -0.015 4.015 20 N -0.938 5.938 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.185 4.185 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.396 0.604 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.022 0.978 44 H 0.050 0.950 45 H 0.381 0.619 46 H 0.253 0.747 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 8.489 -8.928 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 C -0.196 4.196 4 C -0.042 4.042 5 N -0.207 5.207 6 C -0.181 4.181 7 C -0.172 4.172 8 N -0.118 5.118 9 C -0.048 4.048 10 C 0.290 3.710 11 O -0.373 6.373 12 N -0.365 5.365 13 C 0.117 3.883 14 C -0.205 4.205 15 C 0.013 3.987 16 N -0.370 5.370 17 C -0.361 4.361 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.587 5.587 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.192 4.192 27 C -0.222 4.222 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.184 0.816 36 H 0.191 0.809 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.229 0.771 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.215 0.785 46 H 0.063 0.937 47 H 0.125 0.875 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.913 9.803 -8.192 18.889 hybrid contribution 1.103 -1.848 0.328 2.177 sum -12.810 7.955 -7.863 17.006 Atomic orbital electron populations 1.21791 0.93403 1.01925 1.02593 1.19461 0.96104 0.96050 0.90779 1.21759 1.01919 0.93882 1.02076 1.23020 0.97001 0.88628 0.95523 1.70121 1.24732 1.26919 0.98948 1.22150 1.02058 0.94520 0.99364 1.22734 1.07103 1.04827 0.82506 1.44755 1.38138 1.22953 1.05911 1.21733 0.96051 0.98289 0.88696 1.20227 0.85542 0.84549 0.80717 1.90767 1.66185 1.25361 1.55008 1.45906 1.21740 1.38794 1.30038 1.20070 0.82486 0.90237 0.95485 1.21983 1.01058 1.01268 0.96177 1.21096 0.94378 0.89203 0.94030 1.42241 1.56160 1.01374 1.37263 1.19229 1.18913 0.92009 1.05942 0.91429 1.24650 1.00957 0.95611 0.99767 1.69633 1.47191 0.98944 1.42958 0.86219 0.80377 0.77248 0.82582 1.21824 1.21836 1.20814 1.22529 0.95872 0.97080 1.00874 1.22876 0.96717 1.00846 0.98763 1.22974 1.05335 1.02892 0.91006 0.91335 0.92059 0.92927 0.90882 0.91615 0.91938 0.92319 0.81592 0.80945 0.87026 0.85755 0.77073 0.90713 0.90963 0.92835 0.95998 0.93186 0.78496 0.93706 0.87506 0.89305 0.89581 0.89372 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.00 -0.04 3.25 -91.77 -0.30 -0.34 16 3 C -0.14 -1.60 9.18 37.16 0.34 -1.26 16 4 C 0.22 3.23 6.40 -155.42 -0.99 2.24 16 5 N -0.49 -8.01 11.25 -10.82 -0.12 -8.13 16 6 C -0.03 -0.53 11.87 -17.81 -0.21 -0.74 16 7 C -0.04 -0.61 11.58 -16.56 -0.19 -0.80 16 8 N -0.44 -6.33 2.24 -115.19 -0.26 -6.59 16 9 C 0.08 0.96 6.17 -5.19 -0.03 0.93 16 10 C 0.51 7.54 5.16 -10.98 -0.06 7.48 16 11 O -0.50 -9.38 12.35 5.55 0.07 -9.31 16 12 N -0.71 -9.54 4.19 -47.61 -0.20 -9.74 16 13 C 0.20 3.05 0.55 -131.82 -0.07 2.98 16 14 C -0.15 -2.01 8.19 37.16 0.30 -1.70 16 15 C 0.14 2.88 4.83 -4.04 -0.02 2.86 16 16 N -0.73 -17.59 5.17 -59.91 -0.31 -17.90 16 17 C -0.23 -6.39 9.99 -15.06 -0.15 -6.54 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.94 -27.30 13.06 55.49 0.72 -26.58 16 21 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 C -0.14 -1.96 4.83 -90.63 -0.44 -2.39 16 26 C -0.15 -1.95 8.30 -26.74 -0.22 -2.17 16 27 C -0.19 -2.00 9.68 -26.74 -0.26 -2.25 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.74 6.85 -51.93 -0.36 0.39 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.17 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.17 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.11 0.95 7.28 -51.93 -0.38 0.57 16 38 H 0.12 1.42 8.13 -51.93 -0.42 1.00 16 39 H 0.40 4.22 8.49 -40.82 -0.35 3.87 16 40 H 0.07 1.19 6.86 -51.92 -0.36 0.83 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.58 6.96 -51.92 -0.36 0.22 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.05 1.17 5.92 -51.93 -0.31 0.86 16 45 H 0.38 9.35 6.35 -40.82 -0.26 9.09 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.11 1.52 8.07 -51.92 -0.42 1.10 16 48 H 0.09 1.13 5.10 -51.93 -0.26 0.87 16 49 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 0.89 7.25 -51.93 -0.38 0.51 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -34.06 404.72 -9.54 -43.61 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -8.47 Total: 14.28 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.05 Total: -3.20 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -0.16 Total: -68.94 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.06 -9.54 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269637168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.457 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds