Wall clock time and date at job start Tue Mar 31 2020 20:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.50694 * 109.47311 * 120.00355 * 2 1 3 5 5 N 1.30505 * 125.64661 * 300.04026 * 4 2 1 6 6 C 1.34129 * 109.25357 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02124 * 359.73514 * 6 5 4 8 8 N 1.35038 * 125.65410 * 119.99740 * 4 2 1 9 9 C 1.46499 * 126.39520 * 0.03670 * 8 4 2 10 10 C 1.50704 * 109.47262 * 85.00311 * 9 8 4 11 11 O 1.21287 * 119.99332 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00324 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00037 * 185.26811 * 12 10 9 14 14 C 1.52997 * 109.47362 * 173.94715 * 13 12 10 15 15 C 1.53011 * 109.46858 * 53.95365 * 13 12 10 16 16 N 1.46496 * 109.47052 * 59.99778 * 15 13 12 17 17 C 1.36936 * 119.99711 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00228 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99820 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00081 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47251 * 89.99715 * 21 19 17 23 23 H 1.48505 * 109.47321 * 209.99468 * 21 19 17 24 24 H 1.48499 * 109.47531 * 329.99641 * 21 19 17 25 25 C 1.52997 * 109.47448 * 293.95345 * 13 12 10 26 26 C 1.52993 * 117.50152 * 3.03049 * 25 13 12 27 27 C 1.52993 * 60.00224 * 252.51452 * 26 25 13 28 28 H 1.08999 * 109.46805 * 300.00034 * 1 2 3 29 29 H 1.09004 * 109.46615 * 59.99960 * 1 2 3 30 30 H 1.08997 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47264 * 240.00070 * 2 1 3 32 32 H 1.08999 * 109.47337 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.47177 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47699 * 299.99742 * 3 2 1 35 35 H 1.08006 * 125.98352 * 180.02562 * 6 5 4 36 36 H 1.08003 * 126.58953 * 180.28228 * 7 6 5 37 37 H 1.08990 * 109.47389 * 325.00182 * 9 8 4 38 38 H 1.09002 * 109.47222 * 204.99675 * 9 8 4 39 39 H 0.96996 * 119.99667 * 5.27447 * 12 10 9 40 40 H 1.09009 * 109.47158 * 300.01020 * 14 13 12 41 41 H 1.08994 * 109.47770 * 180.02562 * 14 13 12 42 42 H 1.09010 * 109.46885 * 59.99861 * 14 13 12 43 43 H 1.08997 * 109.46725 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46812 * 299.99569 * 15 13 12 45 45 H 0.96999 * 120.00148 * 359.97438 * 16 15 13 46 46 H 0.97004 * 120.00544 * 180.02562 * 20 19 17 47 47 H 1.09008 * 115.54988 * 148.74286 * 25 13 12 48 48 H 1.09004 * 117.49511 * 0.02562 * 26 25 13 49 49 H 1.08996 * 117.50057 * 145.01874 * 26 25 13 50 50 H 1.09003 * 117.49840 * 252.51464 * 27 26 25 51 51 H 1.09002 * 117.50228 * 107.49102 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7854 -0.3625 2.4637 6 6 2.3925 -1.2216 3.2957 7 6 3.0355 -2.1401 2.5497 8 7 2.8120 -1.8130 1.2394 9 6 3.3190 -2.5288 0.0661 10 6 4.5914 -1.8761 -0.4095 11 8 5.0310 -0.9080 0.1741 12 7 5.2407 -2.3682 -1.4831 13 6 6.5357 -1.8075 -1.8764 14 6 7.1232 -2.6349 -3.0214 15 6 7.4902 -1.8412 -0.6809 16 7 7.6714 -3.2263 -0.2396 17 6 8.4884 -3.5048 0.8234 18 1 8.9996 -2.7035 1.3362 19 6 8.6606 -4.8174 1.2412 20 7 8.0381 -5.7940 0.6160 21 14 9.7757 -5.1974 2.6908 22 1 8.9840 -5.1631 3.9467 23 1 10.3705 -6.5471 2.5174 24 1 10.8592 -4.1843 2.7609 25 6 6.3465 -0.3609 -2.3373 26 6 4.9397 0.2328 -2.2414 27 6 5.5272 -0.1258 -3.6078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6768 1.9564 -0.8899 35 1 2.3661 -1.1860 4.3748 36 1 3.6175 -2.9734 2.9150 37 1 2.5746 -2.4960 -0.7293 38 1 3.5206 -3.5664 0.3325 39 1 4.8505 -3.0934 -1.9955 40 1 7.2580 -3.6656 -2.6930 41 1 8.0870 -2.2181 -3.3137 42 1 6.4432 -2.6110 -3.8730 43 1 8.4539 -1.4245 -0.9737 44 1 7.0717 -1.2517 0.1348 45 1 7.2120 -3.9460 -0.6999 46 1 8.1580 -6.7112 0.9082 47 1 7.1884 0.3059 -2.1507 48 1 4.1491 -0.4071 -1.8495 49 1 4.8558 1.2904 -1.9915 50 1 5.8298 0.6960 -4.2569 51 1 5.1229 -1.0017 -4.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269637168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:45 Heat of formation + Delta-G solvation = 50.749385 kcal Electronic energy + Delta-G solvation = -31133.080838 eV Core-core repulsion = 27262.379519 eV Total energy + Delta-G solvation = -3870.701319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.16347 -41.53216 -38.51564 -36.62125 -36.24713 -35.01512 -34.86297 -33.19392 -31.31862 -29.80998 -28.54375 -28.01187 -27.65111 -25.54345 -23.83041 -23.10691 -23.06216 -22.59740 -21.92023 -20.36933 -20.02162 -19.29067 -18.49666 -18.18201 -17.26418 -16.90911 -16.32341 -16.24029 -15.97583 -15.41078 -15.40155 -15.20231 -15.00493 -14.73697 -14.65508 -14.44512 -14.27100 -13.79450 -13.73726 -13.53962 -13.31023 -13.18242 -13.01225 -12.97018 -12.83217 -12.38798 -12.37239 -12.28897 -12.13752 -12.10438 -11.99632 -11.83559 -11.79197 -11.39968 -11.14144 -10.97685 -10.94460 -10.78256 -10.25048 -9.94016 -9.28215 -8.94919 -7.97969 -5.22945 1.01099 1.42732 1.43812 1.51710 1.62848 1.72326 2.20088 2.33246 2.52522 2.98832 3.35532 3.42615 3.63970 3.67147 3.72305 3.81581 4.00572 4.02410 4.05545 4.14421 4.18157 4.23975 4.35522 4.36308 4.40063 4.56846 4.60097 4.74998 4.83219 4.83962 4.85948 4.90403 4.93263 4.98212 4.98287 5.07759 5.11128 5.19543 5.28676 5.30850 5.34155 5.37254 5.38624 5.43903 5.45446 5.68923 5.82811 6.22460 6.25527 6.63311 7.15794 7.32647 7.34278 8.06969 8.37447 9.24454 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004498 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.946809 B = 6223.354020 C = 8114.840266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.005 4.005 3 C -0.131 4.131 4 C 0.221 3.779 5 N -0.520 5.520 6 C -0.048 4.048 7 C -0.059 4.059 8 N -0.439 5.439 9 C 0.079 3.921 10 C 0.503 3.497 11 O -0.543 6.543 12 N -0.702 5.702 13 C 0.215 3.785 14 C -0.139 4.139 15 C 0.143 3.857 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.056 0.944 19 C -0.061 4.061 20 N -0.958 5.958 21 Si 0.961 3.039 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.168 4.168 26 C -0.158 4.158 27 C -0.149 4.149 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.180 0.820 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.412 0.588 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.011 0.989 44 H 0.020 0.980 45 H 0.380 0.620 46 H 0.252 0.748 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.104 0.896 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 8.307 -11.382 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 C -0.189 4.189 4 C -0.042 4.042 5 N -0.239 5.239 6 C -0.195 4.195 7 C -0.192 4.192 8 N -0.121 5.121 9 C -0.047 4.047 10 C 0.288 3.712 11 O -0.420 6.420 12 N -0.355 5.355 13 C 0.128 3.872 14 C -0.197 4.197 15 C 0.016 3.984 16 N -0.370 5.370 17 C -0.375 4.375 18 H 0.074 0.926 19 C -0.254 4.254 20 N -0.609 5.609 21 Si 0.791 3.209 22 H -0.218 1.218 23 H -0.215 1.215 24 H -0.203 1.203 25 C -0.187 4.187 26 C -0.196 4.196 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.197 0.803 36 H 0.193 0.807 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.029 0.971 44 H 0.038 0.962 45 H 0.213 0.787 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.122 0.878 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.304 9.611 -10.677 20.990 hybrid contribution 1.572 -1.716 1.114 2.580 sum -13.732 7.895 -9.563 18.503 Atomic orbital electron populations 1.21746 0.91709 1.02408 1.03144 1.19682 0.97402 0.95527 0.89936 1.21692 1.00085 0.94381 1.02787 1.23709 0.96046 0.88304 0.96131 1.70114 1.26000 1.27752 1.00015 1.22507 1.02132 0.94560 1.00297 1.22912 1.07641 1.05264 0.83386 1.44899 1.37932 1.23137 1.06125 1.21961 0.95782 0.97819 0.89105 1.20720 0.86141 0.83976 0.80359 1.90765 1.67490 1.27442 1.56295 1.45792 1.20867 1.38926 1.29933 1.19787 0.81993 0.92008 0.93397 1.21918 1.01878 0.99194 0.96671 1.21096 0.95242 0.86600 0.95493 1.42254 1.55453 1.02831 1.36425 1.19450 1.19280 0.91963 1.06849 0.92570 1.25282 1.02504 0.95494 1.02117 1.69737 1.48205 0.98940 1.44031 0.85333 0.78850 0.76997 0.79751 1.21819 1.21524 1.20343 1.22385 0.96318 0.95724 1.04304 1.22851 0.95779 1.00410 1.00514 1.23070 1.01974 1.03751 0.89806 0.92931 0.89339 0.92480 0.88953 0.93106 0.94601 0.89379 0.80270 0.80685 0.82572 0.84960 0.75094 0.93063 0.91260 0.88980 0.97104 0.96216 0.78662 0.93935 0.88997 0.89281 0.90243 0.87779 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.18 71.98 0.66 -1.54 16 2 C -0.01 -0.11 3.25 -11.54 -0.04 -0.15 16 3 C -0.13 -2.89 9.18 71.98 0.66 -2.23 16 4 C 0.22 6.35 6.40 138.13 0.88 7.23 16 5 N -0.52 -17.28 11.25 -188.13 -2.12 -19.39 16 6 C -0.05 -1.55 11.87 83.52 0.99 -0.56 16 7 C -0.06 -1.87 11.58 83.09 0.96 -0.91 16 8 N -0.44 -12.53 2.24 -518.35 -1.16 -13.69 16 9 C 0.08 1.78 6.17 85.63 0.53 2.31 16 10 C 0.50 14.52 5.16 87.66 0.45 14.98 16 11 O -0.54 -20.72 12.35 -3.05 -0.04 -20.76 16 12 N -0.70 -17.65 4.19 -422.92 -1.77 -19.42 16 13 C 0.21 6.27 0.55 3.61 0.00 6.27 16 14 C -0.14 -3.53 8.19 71.98 0.59 -2.94 16 15 C 0.14 6.02 4.83 86.38 0.42 6.44 16 16 N -0.73 -35.84 5.17 -343.44 -1.78 -37.62 16 17 C -0.24 -13.81 9.99 84.04 0.84 -12.97 16 18 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 19 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 20 N -0.96 -55.90 13.06 21.65 0.28 -55.62 16 21 Si 0.96 46.54 29.55 68.60 2.03 48.56 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 C -0.17 -4.35 4.83 -10.80 -0.05 -4.40 16 26 C -0.16 -3.68 8.30 30.59 0.25 -3.42 16 27 C -0.15 -2.67 9.68 30.59 0.30 -2.37 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.57 6.85 -2.38 -0.02 1.55 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.18 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.16 2.05 7.28 -2.39 -0.02 2.03 16 38 H 0.13 2.80 8.13 -2.39 -0.02 2.78 16 39 H 0.41 7.60 8.49 -92.71 -0.79 6.82 16 40 H 0.05 1.56 6.86 -2.38 -0.02 1.54 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.62 6.96 -2.38 -0.02 1.61 16 43 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.02 0.97 5.92 -2.39 -0.01 0.96 16 45 H 0.38 18.78 6.35 -92.71 -0.59 18.20 16 46 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.09 2.64 8.07 -2.38 -0.02 2.62 16 48 H 0.09 2.06 5.10 -2.38 -0.01 2.05 16 49 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.11 1.57 7.25 -2.39 -0.02 1.55 16 Total: -1.00 -76.27 404.72 2.92 -73.35 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.44 Total: 41.83 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.91 Total: 2.75 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -6.54 Total: -145.74 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.27 2.92 -73.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269637168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.099 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds