Wall clock time and date at job start Tue Mar 31 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47238 * 2 1 4 4 C 1.38044 * 126.29389 * 269.71824 * 3 2 1 5 5 C 1.47433 * 126.41081 * 359.97438 * 4 3 2 6 6 O 1.21594 * 120.00312 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99670 * 180.02562 * 5 4 3 8 8 C 1.46490 * 120.00182 * 174.76524 * 7 5 4 9 9 H 1.09007 * 109.47250 * 4.70357 * 8 7 5 10 10 C 1.52999 * 109.47508 * 124.70517 * 8 7 5 11 11 N 1.46500 * 109.46870 * 305.00015 * 10 8 7 12 12 C 1.36940 * 120.00145 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31615 * 120.00026 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47166 * 89.99941 * 16 14 12 18 18 H 1.48500 * 109.47108 * 209.99978 * 16 14 12 19 19 H 1.48498 * 109.47138 * 330.00116 * 16 14 12 20 20 C 1.53001 * 109.47393 * 244.70477 * 8 7 5 21 21 C 1.54264 * 110.03269 * 181.52979 * 20 8 7 22 22 C 1.54887 * 104.19460 * 217.10356 * 21 20 8 23 23 C 1.54894 * 102.74982 * 37.94514 * 22 21 20 24 24 C 1.53881 * 110.02956 * 64.36401 * 20 8 7 25 25 C 1.41292 * 107.17048 * 179.90329 * 4 3 2 26 26 N 1.30446 * 108.02065 * 0.35940 * 25 4 3 27 27 N 1.34255 * 126.28878 * 90.02457 * 3 2 1 28 28 C 1.46501 * 125.75715 * 359.94440 * 27 3 2 29 29 H 1.08997 * 109.47015 * 299.99268 * 1 2 3 30 30 H 1.08996 * 109.47528 * 59.99750 * 1 2 3 31 31 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47528 * 120.00249 * 2 1 3 33 33 H 1.09006 * 109.47399 * 240.00023 * 2 1 3 34 34 H 0.97002 * 120.00262 * 354.76122 * 7 5 4 35 35 H 1.08998 * 109.47358 * 64.99707 * 10 8 7 36 36 H 1.09005 * 109.47398 * 185.00473 * 10 8 7 37 37 H 0.97003 * 120.00449 * 0.02562 * 11 10 8 38 38 H 0.97004 * 119.99779 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.01352 * 302.97333 * 20 8 7 40 40 H 1.09001 * 110.48814 * 335.78355 * 21 20 8 41 41 H 1.09000 * 110.48806 * 98.43170 * 21 20 8 42 42 H 1.09004 * 110.76163 * 279.63128 * 22 21 20 43 43 H 1.09009 * 110.75688 * 156.25995 * 22 21 20 44 44 H 1.08998 * 110.48861 * 203.37620 * 23 22 21 45 45 H 1.09003 * 110.59865 * 80.78954 * 23 22 21 46 46 H 1.08995 * 110.02991 * 238.57264 * 24 20 8 47 47 H 1.08999 * 110.02911 * 359.95324 * 24 20 8 48 48 H 1.08003 * 125.98651 * 180.11519 * 25 4 3 49 49 H 1.08998 * 109.47139 * 89.99788 * 28 27 3 50 50 H 1.08999 * 109.47269 * 209.99982 * 28 27 3 51 51 H 1.09001 * 109.46724 * 330.00415 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3099 2.1894 -1.1126 5 6 2.1708 1.7737 -2.5203 6 8 1.7766 0.6549 -2.7877 7 7 2.4805 2.6337 -3.5106 8 6 2.4528 2.1859 -4.9051 9 1 2.0819 1.1618 -4.9506 10 6 1.5306 3.0987 -5.7158 11 7 0.2074 3.1376 -5.0883 12 6 -0.7907 3.8947 -5.6413 13 1 -0.6023 4.4635 -6.5399 14 6 -2.0444 3.9319 -5.0465 15 7 -2.2739 3.2392 -3.9512 16 14 -3.4056 4.9653 -5.8005 17 1 -4.1671 4.1448 -6.7765 18 1 -4.3203 5.4365 -4.7298 19 1 -2.8117 6.1358 -6.4949 20 6 3.8666 2.2425 -5.4872 21 6 3.8462 1.8096 -6.9678 22 6 5.1620 1.0128 -7.1487 23 6 5.2829 0.2440 -5.8095 24 6 4.7801 1.2469 -4.7508 25 6 2.7506 3.4495 -0.6497 26 7 2.7423 3.4258 0.6545 27 7 2.2976 2.1698 1.0822 28 6 2.1466 1.7442 2.4758 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.7218 3.5494 -3.3001 35 1 1.9488 4.1049 -5.7443 36 1 1.4398 2.7139 -6.7316 37 1 0.0381 2.6270 -4.2810 38 1 -3.1501 3.2649 -3.5357 39 1 4.2665 3.2525 -5.3982 40 1 2.9841 1.1731 -7.1673 41 1 3.8361 2.6826 -7.6204 42 1 6.0070 1.6879 -7.2842 43 1 5.0818 0.3197 -7.9862 44 1 6.3213 -0.0256 -5.6168 45 1 4.6543 -0.6465 -5.8204 46 1 5.6237 1.7737 -4.3051 47 1 4.2163 0.7242 -3.9781 48 1 3.0466 4.2845 -1.2675 49 1 3.0777 1.2953 2.8216 50 1 1.9076 2.6083 3.0958 51 1 1.3420 1.0123 2.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270415558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:48 Heat of formation + Delta-G solvation = 28.269427 kcal Electronic energy + Delta-G solvation = -30271.023395 eV Core-core repulsion = 26399.347272 eV Total energy + Delta-G solvation = -3871.676123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.36553 -39.41087 -37.70137 -35.20030 -34.30670 -33.30385 -32.89104 -31.12500 -29.72406 -28.98974 -28.49126 -27.09273 -26.01626 -23.92134 -23.19324 -22.23645 -21.28135 -20.35331 -20.13486 -19.80580 -19.04361 -17.33440 -17.01223 -15.94920 -15.81262 -15.58476 -15.21029 -14.96038 -14.52203 -14.39186 -14.16203 -14.01099 -13.49200 -13.28921 -13.20652 -13.11762 -13.03817 -12.77769 -12.65001 -12.45584 -12.14518 -11.95568 -11.55188 -11.29465 -11.16529 -11.06467 -10.96225 -10.90139 -10.81065 -10.75109 -10.58379 -10.53684 -10.40025 -10.18476 -9.96955 -9.63450 -9.35922 -9.28714 -8.79753 -8.55979 -8.27225 -6.81532 -5.66464 -2.95097 1.68861 2.37253 2.38813 3.47967 3.52713 3.54511 3.73348 3.92205 4.45832 4.55691 4.63460 4.76768 4.79832 4.90123 4.92635 4.95174 5.08646 5.21754 5.33160 5.38566 5.42132 5.53205 5.59392 5.63103 5.64921 5.68782 5.72357 5.78065 5.83268 5.84126 5.98275 5.99700 6.01582 6.09192 6.14113 6.22933 6.28152 6.39526 6.42799 6.46834 6.50289 6.53675 6.60562 6.64018 6.83288 6.91419 7.16338 7.63961 7.76732 8.10023 8.51347 8.84228 9.62937 10.23095 10.58447 11.55548 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006670 B = 0.005190 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4197.099840 B = 5393.445616 C = 8521.909180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C 0.159 3.841 4 C -0.285 4.285 5 C 0.601 3.399 6 O -0.548 6.548 7 N -0.708 5.708 8 C 0.141 3.859 9 H 0.101 0.899 10 C 0.143 3.857 11 N -0.728 5.728 12 C -0.239 4.239 13 H 0.068 0.932 14 C -0.013 4.013 15 N -0.928 5.928 16 Si 0.904 3.096 17 H -0.291 1.291 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.086 3.914 26 N -0.304 5.304 27 N -0.367 5.367 28 C 0.098 3.902 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.395 0.605 35 H 0.018 0.982 36 H 0.030 0.970 37 H 0.388 0.612 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.187 0.813 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.891 -5.858 7.602 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C 0.027 3.973 4 C -0.299 4.299 5 C 0.389 3.611 6 O -0.426 6.426 7 N -0.357 5.357 8 C 0.036 3.964 9 H 0.119 0.881 10 C 0.015 3.985 11 N -0.372 5.372 12 C -0.370 4.370 13 H 0.086 0.914 14 C -0.209 4.209 15 N -0.576 5.576 16 Si 0.735 3.265 17 H -0.218 1.218 18 H -0.219 1.219 19 H -0.209 1.209 20 C -0.117 4.117 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.102 4.102 26 N -0.124 5.124 27 N -0.146 5.146 28 C -0.043 4.043 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.229 0.771 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.222 0.778 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.204 0.796 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.753 -5.905 8.549 18.871 hybrid contribution -0.992 0.722 -0.629 1.379 sum 14.760 -5.183 7.920 17.535 Atomic orbital electron populations 1.21660 0.93092 1.02379 1.02931 1.20432 0.97370 0.88331 1.04334 1.21520 0.94653 0.94942 0.86232 1.20048 1.19900 0.96072 0.93888 1.17050 0.76026 0.84542 0.83492 1.90708 1.46879 1.21019 1.84025 1.45511 1.70296 1.13886 1.05975 1.21401 0.93814 1.01131 0.80057 0.88124 1.21019 0.86806 0.95782 0.94940 1.42315 1.06278 1.57057 1.31584 1.19205 0.90461 1.20470 1.06865 0.91371 1.24722 0.97679 1.00673 0.97815 1.69692 1.22145 1.45020 1.20788 0.86243 0.82423 0.79861 0.77974 1.21812 1.21926 1.20858 1.22094 0.95210 0.99367 0.94999 1.22395 0.97765 0.99954 0.95312 1.22494 0.97806 0.98628 0.97236 1.22350 1.00327 0.98444 0.95046 1.22152 0.98513 0.96711 0.98083 1.23980 0.97113 0.97162 0.91902 1.77123 1.22654 0.99209 1.13369 1.48256 1.50358 1.09854 1.06150 1.21903 1.02954 1.01764 0.77725 0.93510 0.90585 0.91709 0.91349 0.87031 0.77118 0.96463 0.95281 0.77807 0.93711 0.91004 0.90919 0.91483 0.91894 0.91905 0.92366 0.91700 0.92509 0.91318 0.79573 0.90612 0.89013 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 37.16 0.37 -1.56 16 2 C -0.07 -0.84 5.40 -27.88 -0.15 -0.99 16 3 C 0.16 2.33 6.26 -81.60 -0.51 1.82 16 4 C -0.28 -4.63 6.13 -105.06 -0.64 -5.28 16 5 C 0.60 10.79 7.10 -12.52 -0.09 10.70 16 6 O -0.55 -11.21 14.16 5.28 0.07 -11.13 16 7 N -0.71 -11.56 4.01 -54.88 -0.22 -11.78 16 8 C 0.14 2.36 1.71 -67.94 -0.12 2.24 16 9 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 10 C 0.14 2.87 5.59 -4.04 -0.02 2.84 16 11 N -0.73 -18.84 5.43 -59.91 -0.33 -19.17 16 12 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 13 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 16 Si 0.90 22.90 29.55 -169.99 -5.02 17.87 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.10 -1.27 2.71 -89.50 -0.24 -1.51 16 21 C -0.12 -1.43 5.32 -25.07 -0.13 -1.56 16 22 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 23 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 24 C -0.12 -1.46 6.24 -25.61 -0.16 -1.62 16 25 C 0.09 1.27 11.51 -16.98 -0.20 1.07 16 26 N -0.30 -4.58 12.50 30.86 0.39 -4.20 16 27 N -0.37 -4.89 3.98 -63.34 -0.25 -5.15 16 28 C 0.10 0.82 11.06 59.85 0.66 1.48 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 33 H 0.11 1.61 6.49 -51.93 -0.34 1.27 16 34 H 0.40 5.75 7.80 -40.82 -0.32 5.43 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.59 7.16 -51.93 -0.37 0.22 16 37 H 0.39 10.90 7.31 -40.82 -0.30 10.61 16 38 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.98 7.52 -51.93 -0.39 0.59 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 1.00 6.87 -51.93 -0.36 0.65 16 48 H 0.19 2.18 7.51 -52.48 -0.39 1.79 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.09 0.59 7.62 -51.93 -0.40 0.20 16 LS Contribution 407.05 15.07 6.13 6.13 Total: -1.00 -35.04 407.05 -8.99 -44.03 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -8.66 Total: 14.38 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.82 Total: -2.81 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: 0.31 Total: -68.47 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.04 -8.99 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.295 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds