Wall clock time and date at job start Tue Mar 31 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47238 * 2 1 4 4 C 1.38044 * 126.29389 * 269.71824 * 3 2 1 5 5 C 1.47433 * 126.41081 * 359.97438 * 4 3 2 6 6 O 1.21594 * 120.00312 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99670 * 180.02562 * 5 4 3 8 8 C 1.46490 * 120.00182 * 174.76524 * 7 5 4 9 9 H 1.09007 * 109.47250 * 4.70357 * 8 7 5 10 10 C 1.52999 * 109.47508 * 124.70517 * 8 7 5 11 11 N 1.46500 * 109.46870 * 305.00015 * 10 8 7 12 12 C 1.36940 * 120.00145 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31615 * 120.00026 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99887 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47166 * 89.99941 * 16 14 12 18 18 H 1.48500 * 109.47108 * 209.99978 * 16 14 12 19 19 H 1.48498 * 109.47138 * 330.00116 * 16 14 12 20 20 C 1.53001 * 109.47393 * 244.70477 * 8 7 5 21 21 C 1.54264 * 110.03269 * 181.52979 * 20 8 7 22 22 C 1.54887 * 104.19460 * 217.10356 * 21 20 8 23 23 C 1.54894 * 102.74982 * 37.94514 * 22 21 20 24 24 C 1.53881 * 110.02956 * 64.36401 * 20 8 7 25 25 C 1.41292 * 107.17048 * 179.90329 * 4 3 2 26 26 N 1.30446 * 108.02065 * 0.35940 * 25 4 3 27 27 N 1.34255 * 126.28878 * 90.02457 * 3 2 1 28 28 C 1.46501 * 125.75715 * 359.94440 * 27 3 2 29 29 H 1.08997 * 109.47015 * 299.99268 * 1 2 3 30 30 H 1.08996 * 109.47528 * 59.99750 * 1 2 3 31 31 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47528 * 120.00249 * 2 1 3 33 33 H 1.09006 * 109.47399 * 240.00023 * 2 1 3 34 34 H 0.97002 * 120.00262 * 354.76122 * 7 5 4 35 35 H 1.08998 * 109.47358 * 64.99707 * 10 8 7 36 36 H 1.09005 * 109.47398 * 185.00473 * 10 8 7 37 37 H 0.97003 * 120.00449 * 0.02562 * 11 10 8 38 38 H 0.97004 * 119.99779 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.01352 * 302.97333 * 20 8 7 40 40 H 1.09001 * 110.48814 * 335.78355 * 21 20 8 41 41 H 1.09000 * 110.48806 * 98.43170 * 21 20 8 42 42 H 1.09004 * 110.76163 * 279.63128 * 22 21 20 43 43 H 1.09009 * 110.75688 * 156.25995 * 22 21 20 44 44 H 1.08998 * 110.48861 * 203.37620 * 23 22 21 45 45 H 1.09003 * 110.59865 * 80.78954 * 23 22 21 46 46 H 1.08995 * 110.02991 * 238.57264 * 24 20 8 47 47 H 1.08999 * 110.02911 * 359.95324 * 24 20 8 48 48 H 1.08003 * 125.98651 * 180.11519 * 25 4 3 49 49 H 1.08998 * 109.47139 * 89.99788 * 28 27 3 50 50 H 1.08999 * 109.47269 * 209.99982 * 28 27 3 51 51 H 1.09001 * 109.46724 * 330.00415 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3099 2.1894 -1.1126 5 6 2.1708 1.7737 -2.5203 6 8 1.7766 0.6549 -2.7877 7 7 2.4805 2.6337 -3.5106 8 6 2.4528 2.1859 -4.9051 9 1 2.0819 1.1618 -4.9506 10 6 1.5306 3.0987 -5.7158 11 7 0.2074 3.1376 -5.0883 12 6 -0.7907 3.8947 -5.6413 13 1 -0.6023 4.4635 -6.5399 14 6 -2.0444 3.9319 -5.0465 15 7 -2.2739 3.2392 -3.9512 16 14 -3.4056 4.9653 -5.8005 17 1 -4.1671 4.1448 -6.7765 18 1 -4.3203 5.4365 -4.7298 19 1 -2.8117 6.1358 -6.4949 20 6 3.8666 2.2425 -5.4872 21 6 3.8462 1.8096 -6.9678 22 6 5.1620 1.0128 -7.1487 23 6 5.2829 0.2440 -5.8095 24 6 4.7801 1.2469 -4.7508 25 6 2.7506 3.4495 -0.6497 26 7 2.7423 3.4258 0.6545 27 7 2.2976 2.1698 1.0822 28 6 2.1466 1.7442 2.4758 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.7218 3.5494 -3.3001 35 1 1.9488 4.1049 -5.7443 36 1 1.4398 2.7139 -6.7316 37 1 0.0381 2.6270 -4.2810 38 1 -3.1501 3.2649 -3.5357 39 1 4.2665 3.2525 -5.3982 40 1 2.9841 1.1731 -7.1673 41 1 3.8361 2.6826 -7.6204 42 1 6.0070 1.6879 -7.2842 43 1 5.0818 0.3197 -7.9862 44 1 6.3213 -0.0256 -5.6168 45 1 4.6543 -0.6465 -5.8204 46 1 5.6237 1.7737 -4.3051 47 1 4.2163 0.7242 -3.9781 48 1 3.0466 4.2845 -1.2675 49 1 3.0777 1.2953 2.8216 50 1 1.9076 2.6083 3.0958 51 1 1.3420 1.0123 2.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:43 Heat of formation + Delta-G solvation = 5.277290 kcal Electronic energy + Delta-G solvation = -30272.020409 eV Core-core repulsion = 26399.347272 eV Total energy + Delta-G solvation = -3872.673137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.48351 -40.70687 -38.90202 -36.80174 -35.52672 -34.92250 -33.92692 -32.93788 -31.19672 -30.13369 -29.48067 -28.05803 -27.57046 -25.30938 -24.73185 -23.59931 -22.63369 -21.49374 -21.22031 -20.96891 -20.20354 -19.18279 -18.44148 -17.19198 -16.92147 -16.76980 -16.53425 -16.27918 -16.07659 -15.55870 -15.32742 -15.25174 -15.03797 -14.87504 -14.71700 -14.25276 -14.16699 -13.91454 -13.67595 -13.54050 -13.43192 -13.19990 -12.97349 -12.83556 -12.65877 -12.56164 -12.22014 -12.17568 -12.10569 -11.89111 -11.85540 -11.77202 -11.68562 -11.56977 -11.39581 -11.31662 -10.96476 -10.67877 -10.37621 -9.90674 -9.49982 -8.95754 -7.90741 -5.20050 0.53639 1.18411 1.43531 1.45656 1.48174 1.56267 2.42203 2.56888 2.60365 3.42007 3.50400 3.52342 3.64380 3.78596 3.87587 3.92980 4.09559 4.19701 4.27070 4.29289 4.30816 4.40294 4.45965 4.49531 4.60998 4.63461 4.64548 4.67051 4.73008 4.76691 4.80394 4.88227 4.91678 4.95256 4.98969 5.09211 5.14506 5.18218 5.26511 5.32024 5.32590 5.40046 5.42449 5.50727 5.53501 5.57618 5.77746 5.91768 6.28909 6.51290 6.77972 7.35552 7.48550 8.13858 8.36575 9.32196 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.006670 B = 0.005190 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4197.099840 B = 5393.445616 C = 8521.909180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C 0.155 3.845 4 C -0.318 4.318 5 C 0.596 3.404 6 O -0.583 6.583 7 N -0.702 5.702 8 C 0.154 3.846 9 H 0.067 0.933 10 C 0.142 3.858 11 N -0.742 5.742 12 C -0.242 4.242 13 H 0.078 0.922 14 C -0.077 4.077 15 N -0.968 5.968 16 Si 0.973 3.027 17 H -0.289 1.289 18 H -0.298 1.298 19 H -0.266 1.266 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.112 4.112 25 C 0.084 3.916 26 N -0.321 5.321 27 N -0.360 5.360 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.404 0.596 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.372 0.628 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.208 0.792 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 -5.146 7.872 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C 0.021 3.979 4 C -0.332 4.332 5 C 0.385 3.615 6 O -0.465 6.465 7 N -0.351 5.351 8 C 0.049 3.951 9 H 0.086 0.914 10 C 0.015 3.985 11 N -0.384 5.384 12 C -0.373 4.373 13 H 0.096 0.904 14 C -0.269 4.269 15 N -0.619 5.619 16 Si 0.802 3.198 17 H -0.216 1.216 18 H -0.225 1.225 19 H -0.191 1.191 20 C -0.108 4.108 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.150 4.150 25 C -0.103 4.103 26 N -0.140 5.140 27 N -0.139 5.139 28 C -0.056 4.056 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.240 0.760 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.225 0.775 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.522 -5.153 8.802 20.274 hybrid contribution -1.495 0.458 -0.674 1.703 sum 16.027 -4.695 8.128 18.573 Atomic orbital electron populations 1.21585 0.93754 1.03044 1.01029 1.20425 0.96568 0.87551 1.05364 1.21800 0.93989 0.95645 0.86437 1.20128 1.22165 0.97531 0.93403 1.17386 0.75360 0.84205 0.84509 1.90678 1.48594 1.22530 1.84670 1.45446 1.69818 1.14210 1.05613 1.21197 0.95436 0.98333 0.80168 0.91437 1.21212 0.84982 0.97146 0.95136 1.42535 1.08099 1.56515 1.31269 1.19658 0.91138 1.19829 1.06716 0.90401 1.25572 1.00258 1.02500 0.98563 1.69885 1.22287 1.47166 1.22589 0.85152 0.79177 0.78617 0.76887 1.21615 1.22506 1.19066 1.22049 0.92609 1.00661 0.95457 1.22419 0.98287 1.00354 0.94666 1.22467 0.97117 0.98670 0.97012 1.22353 1.01062 0.97658 0.95032 1.22090 0.98412 0.96744 0.97748 1.24306 0.96693 0.97206 0.92113 1.77063 1.23229 1.00346 1.13373 1.48637 1.48836 1.08958 1.07481 1.22381 1.05153 1.02871 0.75174 0.91883 0.95813 0.89805 0.87048 0.89158 0.76040 0.94972 0.94978 0.79588 0.94398 0.89263 0.92873 0.90449 0.90082 0.90972 0.90498 0.93013 0.90906 0.94089 0.77520 0.88137 0.88143 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.89 71.98 0.71 -3.03 16 2 C -0.06 -1.52 5.40 29.85 0.16 -1.36 16 3 C 0.16 4.57 6.26 42.14 0.26 4.83 16 4 C -0.32 -10.67 6.13 -20.15 -0.12 -10.79 16 5 C 0.60 22.65 7.10 86.67 0.62 23.27 16 6 O -0.58 -25.75 14.16 -4.01 -0.06 -25.81 16 7 N -0.70 -23.78 4.01 -445.82 -1.79 -25.57 16 8 C 0.15 5.31 1.71 44.99 0.08 5.39 16 9 H 0.07 2.81 6.91 -2.38 -0.02 2.80 16 10 C 0.14 5.76 5.59 86.38 0.48 6.24 16 11 N -0.74 -39.42 5.43 -343.44 -1.87 -41.29 16 12 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 13 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 14 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 15 N -0.97 -62.30 13.06 21.65 0.28 -62.02 16 16 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 18 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.09 -2.24 2.71 -10.07 -0.03 -2.27 16 21 C -0.12 -2.80 5.32 31.67 0.17 -2.63 16 22 C -0.12 -2.17 6.91 31.89 0.22 -1.95 16 23 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 24 C -0.11 -2.72 6.24 31.32 0.20 -2.53 16 25 C 0.08 2.47 11.51 85.65 0.99 3.46 16 26 N -0.32 -9.42 12.50 -56.27 -0.70 -10.12 16 27 N -0.36 -9.17 3.98 -354.31 -1.41 -10.58 16 28 C 0.08 1.18 11.06 127.77 1.41 2.59 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 1.83 7.70 -2.39 -0.02 1.81 16 33 H 0.09 2.73 6.49 -2.38 -0.02 2.71 16 34 H 0.40 11.94 7.80 -92.71 -0.72 11.21 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.03 1.30 7.16 -2.38 -0.02 1.28 16 37 H 0.37 21.95 7.31 -92.71 -0.68 21.27 16 38 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.45 7.52 -2.39 -0.02 1.43 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.23 6.87 -2.39 -0.02 1.22 16 48 H 0.21 4.79 7.51 -2.91 -0.02 4.76 16 49 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.11 1.11 7.62 -2.39 -0.02 1.09 16 Total: -1.00 -79.16 407.05 2.69 -76.48 By element: Atomic # 1 Polarization: 48.05 SS G_CDS: -0.47 Total: 47.58 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.67 Total: 1.68 kcal Atomic # 7 Polarization: -144.09 SS G_CDS: -5.48 Total: -149.58 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.06 Total: -25.81 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.16 2.69 -76.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.753 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds