Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46747 * 2 1 4 4 C 1.38041 * 126.29418 * 269.99304 * 3 2 1 5 5 C 1.47432 * 126.41041 * 0.03036 * 4 3 2 6 6 O 1.21605 * 120.00325 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00007 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00180 * 174.99400 * 7 5 4 9 9 H 1.09001 * 109.47169 * 326.50450 * 8 7 5 10 10 C 1.53000 * 109.47337 * 206.50167 * 8 7 5 11 11 N 1.46509 * 109.46818 * 55.00363 * 10 8 7 12 12 C 1.36931 * 119.99790 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99824 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47005 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47131 * 120.00163 * 16 14 12 19 19 H 1.48495 * 109.47325 * 240.00120 * 16 14 12 20 20 C 1.53005 * 109.47029 * 86.50577 * 8 7 5 21 21 C 1.54268 * 110.03244 * 180.56400 * 20 8 7 22 22 C 1.54885 * 104.19521 * 217.10406 * 21 20 8 23 23 C 1.54894 * 102.74948 * 37.94250 * 22 21 20 24 24 C 1.53872 * 110.03073 * 63.39667 * 20 8 7 25 25 C 1.41287 * 107.17478 * 180.02562 * 4 3 2 26 26 N 1.30448 * 108.02079 * 0.02562 * 25 4 3 27 27 N 1.34260 * 126.28986 * 89.69441 * 3 2 1 28 28 C 1.46496 * 125.75670 * 359.96771 * 27 3 2 29 29 H 1.09007 * 109.47088 * 60.00262 * 1 2 3 30 30 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47423 * 299.99970 * 1 2 3 32 32 H 1.08997 * 109.47060 * 119.99707 * 2 1 3 33 33 H 1.08999 * 109.47423 * 240.00030 * 2 1 3 34 34 H 0.96999 * 119.99490 * 354.99942 * 7 5 4 35 35 H 1.08994 * 109.46980 * 174.99844 * 10 8 7 36 36 H 1.08993 * 109.47172 * 295.00618 * 10 8 7 37 37 H 0.96997 * 119.99791 * 359.97438 * 11 10 8 38 38 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 39 39 H 1.09004 * 110.01320 * 302.00359 * 20 8 7 40 40 H 1.08997 * 110.48657 * 335.78776 * 21 20 8 41 41 H 1.09000 * 110.48352 * 98.42821 * 21 20 8 42 42 H 1.09006 * 110.75691 * 279.62763 * 22 21 20 43 43 H 1.08998 * 110.91263 * 156.33054 * 22 21 20 44 44 H 1.08999 * 110.48425 * 203.37989 * 23 22 21 45 45 H 1.08999 * 110.59442 * 80.79196 * 23 22 21 46 46 H 1.09000 * 110.03124 * 238.56986 * 24 20 8 47 47 H 1.08997 * 110.03664 * 0.02562 * 24 20 8 48 48 H 1.07995 * 125.98626 * 179.97438 * 25 4 3 49 49 H 1.09002 * 109.47108 * 90.00040 * 28 27 3 50 50 H 1.09000 * 109.47458 * 210.00599 * 28 27 3 51 51 H 1.08999 * 109.46941 * 330.00740 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3047 2.1912 -1.1126 5 6 2.1582 1.7781 -2.5203 6 8 1.7627 0.6597 -2.7878 7 7 2.4625 2.6401 -3.5107 8 6 2.4225 2.1961 -4.9062 9 1 2.7204 1.1491 -4.9631 10 6 3.3838 3.0459 -5.7396 11 7 4.7228 2.9912 -5.1473 12 6 5.7557 3.6795 -5.7255 13 1 5.5834 4.2630 -6.6178 14 6 7.0242 3.6280 -5.1640 15 7 7.2342 2.9173 -4.0763 16 14 8.4333 4.5675 -5.9522 17 1 7.9389 5.2834 -7.1557 18 1 8.9776 5.5502 -4.9810 19 1 9.5033 3.6163 -6.3463 20 6 1.0011 2.3522 -5.4505 21 6 0.9411 1.8747 -6.9162 22 6 -0.0413 2.8601 -7.5967 23 6 0.3080 4.2106 -6.9235 24 6 0.5986 3.8374 -5.4551 25 6 2.7501 3.4497 -0.6498 26 7 2.7424 3.4258 0.6544 27 7 2.2916 2.1720 1.0822 28 6 2.1335 1.7490 2.4758 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.7081 3.5544 -3.2994 35 1 3.4210 2.6593 -6.7580 36 1 3.0355 4.0786 -5.7554 37 1 4.8774 2.4674 -4.3457 38 1 8.1207 2.8810 -3.6842 39 1 0.3031 1.7781 -4.8411 40 1 1.9261 1.9377 -7.3785 41 1 0.5578 0.8558 -6.9700 42 1 -1.0743 2.5808 -7.3892 43 1 0.1363 2.9067 -8.6711 44 1 -0.5372 4.8963 -6.9828 45 1 1.1901 4.6530 -7.3865 46 1 -0.2952 3.9839 -4.8488 47 1 1.4160 4.4470 -5.0701 48 1 3.0459 4.2846 -1.2676 49 1 3.0630 1.3011 2.8272 50 1 1.8908 2.6141 3.0929 51 1 1.3289 1.0168 2.5441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270415559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = 31.210424 kcal Electronic energy + Delta-G solvation = -30131.146366 eV Core-core repulsion = 26259.597774 eV Total energy + Delta-G solvation = -3871.548592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.39574 -39.52334 -37.81851 -35.14312 -34.38544 -33.34156 -32.96532 -31.08972 -29.76363 -29.01100 -28.48360 -27.09462 -26.08421 -24.04671 -23.26425 -22.31049 -21.64086 -20.64919 -20.21076 -19.37354 -18.60579 -17.48500 -16.99029 -16.04393 -15.79061 -15.47528 -15.45120 -15.05064 -14.51287 -14.42843 -14.29108 -13.95405 -13.60101 -13.55544 -13.33096 -13.18888 -12.93386 -12.79202 -12.74045 -12.41071 -12.27839 -11.98172 -11.70114 -11.42850 -11.25858 -11.09644 -10.92901 -10.85923 -10.82307 -10.81621 -10.62767 -10.45735 -10.33812 -10.14293 -9.84116 -9.70212 -9.39547 -9.34292 -8.85110 -8.63812 -8.31107 -6.89358 -5.73808 -3.03089 1.63511 2.35363 2.37612 3.44378 3.50132 3.52424 3.69208 3.85598 4.42108 4.47376 4.60053 4.81969 4.84272 4.86966 4.92975 4.97144 5.06304 5.18987 5.20627 5.33076 5.38241 5.48521 5.52061 5.58198 5.61063 5.65022 5.69061 5.73001 5.84661 5.84983 5.90268 5.97185 6.04275 6.10594 6.12908 6.16892 6.19847 6.28535 6.37378 6.38439 6.53019 6.54048 6.61476 6.69498 6.84135 6.87775 7.11309 7.63329 7.72218 8.07712 8.43930 8.75613 9.55898 10.13286 10.48535 11.48365 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.004429 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.129104 B = 6320.824681 C = 9012.338006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C 0.155 3.845 4 C -0.287 4.287 5 C 0.598 3.402 6 O -0.556 6.556 7 N -0.706 5.706 8 C 0.148 3.852 9 H 0.086 0.914 10 C 0.143 3.857 11 N -0.731 5.731 12 C -0.240 4.240 13 H 0.070 0.930 14 C -0.012 4.012 15 N -0.929 5.929 16 Si 0.904 3.096 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.119 4.119 25 C 0.091 3.909 26 N -0.302 5.302 27 N -0.367 5.367 28 C 0.098 3.902 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.401 0.599 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.386 0.614 38 H 0.254 0.746 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.190 0.810 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 -2.677 7.444 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C 0.022 3.978 4 C -0.301 4.301 5 C 0.386 3.614 6 O -0.436 6.436 7 N -0.355 5.355 8 C 0.043 3.957 9 H 0.104 0.896 10 C 0.015 3.985 11 N -0.376 5.376 12 C -0.371 4.371 13 H 0.088 0.912 14 C -0.208 4.208 15 N -0.578 5.578 16 Si 0.735 3.265 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.116 4.116 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.097 4.097 26 N -0.121 5.121 27 N -0.146 5.146 28 C -0.044 4.044 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.235 0.765 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.207 0.793 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.300 -2.717 8.371 19.410 hybrid contribution 1.095 0.465 -0.619 1.341 sum -16.205 -2.252 7.753 18.105 Atomic orbital electron populations 1.21627 0.93698 1.02230 1.02053 1.20423 0.96793 0.88627 1.04833 1.21470 0.95352 0.94611 0.86323 1.20051 1.20085 0.96194 0.93795 1.17123 0.76386 0.84343 0.83578 1.90680 1.47945 1.20682 1.84340 1.45675 1.69397 1.14574 1.05840 1.21196 0.94179 1.00248 0.80030 0.89625 1.21090 0.85747 0.96595 0.95091 1.42379 1.03365 1.59370 1.32481 1.19241 0.88209 1.22278 1.07360 0.91179 1.24727 0.97549 1.00623 0.97880 1.69682 1.21596 1.44509 1.21987 0.86163 0.82827 0.79128 0.78339 1.20576 1.21944 1.21950 1.22095 0.96910 0.96204 0.96409 1.22498 1.00337 0.98494 0.94756 1.22454 0.98925 0.95405 0.99196 1.22361 1.00935 0.96965 0.95902 1.22217 1.00916 0.96153 0.96408 1.24074 0.96231 0.97531 0.91853 1.77178 1.22120 0.99333 1.13442 1.48296 1.50145 1.10055 1.06123 1.21902 1.03048 1.01674 0.77743 0.91603 0.91680 0.93480 0.91052 0.86859 0.76473 0.94823 0.95358 0.77986 0.93622 0.90832 0.90409 0.91968 0.92101 0.91924 0.92400 0.91385 0.92657 0.91063 0.79290 0.90448 0.89022 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.07 -0.78 5.39 -27.88 -0.15 -0.93 16 3 C 0.15 2.16 6.26 -81.60 -0.51 1.65 16 4 C -0.29 -4.57 6.13 -105.07 -0.64 -5.22 16 5 C 0.60 10.34 7.79 -12.52 -0.10 10.25 16 6 O -0.56 -10.55 14.53 5.27 0.08 -10.47 16 7 N -0.71 -11.64 4.04 -54.88 -0.22 -11.86 16 8 C 0.15 2.50 1.86 -67.93 -0.13 2.38 16 9 H 0.09 1.65 7.61 -51.93 -0.39 1.26 16 10 C 0.14 2.74 5.27 -4.04 -0.02 2.72 16 11 N -0.73 -17.98 5.43 -59.91 -0.33 -18.31 16 12 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 13 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 16 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 C -0.10 -1.35 2.96 -89.50 -0.26 -1.62 16 21 C -0.12 -1.59 6.19 -25.07 -0.16 -1.75 16 22 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 23 C -0.12 -1.44 6.83 -25.07 -0.17 -1.62 16 24 C -0.12 -1.53 5.62 -25.61 -0.14 -1.67 16 25 C 0.09 1.39 11.51 -16.98 -0.20 1.19 16 26 N -0.30 -4.65 12.50 30.86 0.39 -4.26 16 27 N -0.37 -4.79 3.98 -63.34 -0.25 -5.04 16 28 C 0.10 0.78 11.06 59.84 0.66 1.44 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 33 H 0.11 1.56 6.50 -51.93 -0.34 1.23 16 34 H 0.40 6.34 7.50 -40.82 -0.31 6.03 16 35 H 0.03 0.66 6.30 -51.93 -0.33 0.34 16 36 H 0.03 0.53 6.12 -51.93 -0.32 0.22 16 37 H 0.39 10.26 7.33 -40.82 -0.30 9.96 16 38 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.09 5.85 -51.93 -0.30 0.78 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.97 5.85 -51.93 -0.30 0.67 16 48 H 0.19 2.54 7.51 -52.49 -0.39 2.14 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.49 7.63 -51.93 -0.40 0.09 16 LS Contribution 403.32 15.07 6.08 6.08 Total: -1.00 -33.39 403.32 -8.83 -42.21 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -8.40 Total: 14.55 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.87 Total: -2.85 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: 0.31 Total: -66.85 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.39 -8.83 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.424 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds