Wall clock time and date at job start Tue Mar 31 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46747 * 2 1 4 4 C 1.38041 * 126.29418 * 269.99304 * 3 2 1 5 5 C 1.47432 * 126.41041 * 0.03036 * 4 3 2 6 6 O 1.21605 * 120.00325 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00007 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00180 * 174.99400 * 7 5 4 9 9 H 1.09001 * 109.47169 * 326.50450 * 8 7 5 10 10 C 1.53000 * 109.47337 * 206.50167 * 8 7 5 11 11 N 1.46509 * 109.46818 * 55.00363 * 10 8 7 12 12 C 1.36931 * 119.99790 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.38810 * 119.99824 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47005 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47131 * 120.00163 * 16 14 12 19 19 H 1.48495 * 109.47325 * 240.00120 * 16 14 12 20 20 C 1.53005 * 109.47029 * 86.50577 * 8 7 5 21 21 C 1.54268 * 110.03244 * 180.56400 * 20 8 7 22 22 C 1.54885 * 104.19521 * 217.10406 * 21 20 8 23 23 C 1.54894 * 102.74948 * 37.94250 * 22 21 20 24 24 C 1.53872 * 110.03073 * 63.39667 * 20 8 7 25 25 C 1.41287 * 107.17478 * 180.02562 * 4 3 2 26 26 N 1.30448 * 108.02079 * 0.02562 * 25 4 3 27 27 N 1.34260 * 126.28986 * 89.69441 * 3 2 1 28 28 C 1.46496 * 125.75670 * 359.96771 * 27 3 2 29 29 H 1.09007 * 109.47088 * 60.00262 * 1 2 3 30 30 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47423 * 299.99970 * 1 2 3 32 32 H 1.08997 * 109.47060 * 119.99707 * 2 1 3 33 33 H 1.08999 * 109.47423 * 240.00030 * 2 1 3 34 34 H 0.96999 * 119.99490 * 354.99942 * 7 5 4 35 35 H 1.08994 * 109.46980 * 174.99844 * 10 8 7 36 36 H 1.08993 * 109.47172 * 295.00618 * 10 8 7 37 37 H 0.96997 * 119.99791 * 359.97438 * 11 10 8 38 38 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 39 39 H 1.09004 * 110.01320 * 302.00359 * 20 8 7 40 40 H 1.08997 * 110.48657 * 335.78776 * 21 20 8 41 41 H 1.09000 * 110.48352 * 98.42821 * 21 20 8 42 42 H 1.09006 * 110.75691 * 279.62763 * 22 21 20 43 43 H 1.08998 * 110.91263 * 156.33054 * 22 21 20 44 44 H 1.08999 * 110.48425 * 203.37989 * 23 22 21 45 45 H 1.08999 * 110.59442 * 80.79196 * 23 22 21 46 46 H 1.09000 * 110.03124 * 238.56986 * 24 20 8 47 47 H 1.08997 * 110.03664 * 0.02562 * 24 20 8 48 48 H 1.07995 * 125.98626 * 179.97438 * 25 4 3 49 49 H 1.09002 * 109.47108 * 90.00040 * 28 27 3 50 50 H 1.09000 * 109.47458 * 210.00599 * 28 27 3 51 51 H 1.08999 * 109.46941 * 330.00740 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3047 2.1912 -1.1126 5 6 2.1582 1.7781 -2.5203 6 8 1.7627 0.6597 -2.7878 7 7 2.4625 2.6401 -3.5107 8 6 2.4225 2.1961 -4.9062 9 1 2.7204 1.1491 -4.9631 10 6 3.3838 3.0459 -5.7396 11 7 4.7228 2.9912 -5.1473 12 6 5.7557 3.6795 -5.7255 13 1 5.5834 4.2630 -6.6178 14 6 7.0242 3.6280 -5.1640 15 7 7.2342 2.9173 -4.0763 16 14 8.4333 4.5675 -5.9522 17 1 7.9389 5.2834 -7.1557 18 1 8.9776 5.5502 -4.9810 19 1 9.5033 3.6163 -6.3463 20 6 1.0011 2.3522 -5.4505 21 6 0.9411 1.8747 -6.9162 22 6 -0.0413 2.8601 -7.5967 23 6 0.3080 4.2106 -6.9235 24 6 0.5986 3.8374 -5.4551 25 6 2.7501 3.4497 -0.6498 26 7 2.7424 3.4258 0.6544 27 7 2.2916 2.1720 1.0822 28 6 2.1335 1.7490 2.4758 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.7081 3.5544 -3.2994 35 1 3.4210 2.6593 -6.7580 36 1 3.0355 4.0786 -5.7554 37 1 4.8774 2.4674 -4.3457 38 1 8.1207 2.8810 -3.6842 39 1 0.3031 1.7781 -4.8411 40 1 1.9261 1.9377 -7.3785 41 1 0.5578 0.8558 -6.9700 42 1 -1.0743 2.5808 -7.3892 43 1 0.1363 2.9067 -8.6711 44 1 -0.5372 4.8963 -6.9828 45 1 1.1901 4.6530 -7.3865 46 1 -0.2952 3.9839 -4.8488 47 1 1.4160 4.4470 -5.0701 48 1 3.0459 4.2846 -1.2676 49 1 3.0630 1.3011 2.8272 50 1 1.8908 2.6141 3.0929 51 1 1.3289 1.0168 2.5441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270415559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:52 Heat of formation + Delta-G solvation = 10.147715 kcal Electronic energy + Delta-G solvation = -30132.059714 eV Core-core repulsion = 26259.597774 eV Total energy + Delta-G solvation = -3872.461939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.50445 -40.82004 -39.05719 -36.69767 -35.52541 -34.90232 -33.92975 -32.88775 -31.16670 -30.08674 -29.50779 -28.04596 -27.65937 -25.28683 -24.71931 -23.67970 -23.00167 -21.72342 -21.24301 -20.54041 -19.92861 -19.08158 -18.54765 -17.31076 -16.86607 -16.83015 -16.53808 -16.27554 -16.16735 -15.54792 -15.30924 -15.15133 -15.09172 -14.98162 -14.80410 -14.26763 -14.23162 -13.88046 -13.64032 -13.49023 -13.44436 -13.20038 -13.03795 -12.79854 -12.68638 -12.57906 -12.20144 -12.16768 -12.03636 -11.88218 -11.83752 -11.78376 -11.67316 -11.63999 -11.33103 -11.20319 -10.91198 -10.70923 -10.39306 -9.95736 -9.52318 -8.95392 -7.91308 -5.20257 0.52301 1.14795 1.42899 1.48720 1.49072 1.59087 2.37365 2.55642 2.58009 3.42989 3.48871 3.51804 3.68946 3.77513 3.87459 3.92631 4.04218 4.16153 4.25064 4.28679 4.31808 4.39910 4.42514 4.49464 4.56693 4.62645 4.63240 4.68772 4.71713 4.75846 4.78942 4.90382 4.97360 4.97453 4.99886 5.13983 5.16798 5.22265 5.22684 5.30667 5.33120 5.39077 5.43118 5.53373 5.54589 5.59941 5.73007 5.92003 6.29027 6.49816 6.73433 7.36517 7.40133 8.11277 8.35044 9.31867 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.004429 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.129104 B = 6320.824681 C = 9012.338006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C 0.159 3.841 4 C -0.319 4.319 5 C 0.595 3.405 6 O -0.580 6.580 7 N -0.703 5.703 8 C 0.159 3.841 9 H 0.057 0.943 10 C 0.148 3.852 11 N -0.742 5.742 12 C -0.238 4.238 13 H 0.079 0.921 14 C -0.073 4.073 15 N -0.968 5.968 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.295 1.295 19 H -0.298 1.298 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.083 3.917 26 N -0.323 5.323 27 N -0.360 5.360 28 C 0.083 3.917 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.403 0.597 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.373 0.627 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.197 0.803 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.909 -2.251 7.687 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.105 4.105 3 C 0.025 3.975 4 C -0.334 4.334 5 C 0.384 3.616 6 O -0.462 6.462 7 N -0.352 5.352 8 C 0.054 3.946 9 H 0.075 0.925 10 C 0.021 3.979 11 N -0.385 5.385 12 C -0.370 4.370 13 H 0.097 0.903 14 C -0.265 4.265 15 N -0.619 5.619 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.222 1.222 19 H -0.225 1.225 20 C -0.107 4.107 21 C -0.162 4.162 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.104 4.104 26 N -0.142 5.142 27 N -0.139 5.139 28 C -0.056 4.056 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.238 0.762 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.205 0.795 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.214 0.786 49 H 0.108 0.892 50 H 0.121 0.879 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.871 -2.258 8.598 20.860 hybrid contribution 1.510 0.274 -0.632 1.660 sum -17.361 -1.984 7.966 19.204 Atomic orbital electron populations 1.21581 0.92249 1.03365 1.01685 1.20487 0.97903 0.86969 1.05093 1.21854 0.94122 0.95444 0.86127 1.20107 1.22402 0.97262 0.93587 1.17379 0.75919 0.84014 0.84317 1.90654 1.49182 1.21515 1.84801 1.45633 1.69297 1.14633 1.05665 1.21007 0.95430 0.97949 0.80227 0.92522 1.21187 0.83847 0.97660 0.95166 1.42554 1.04941 1.58844 1.32148 1.19649 0.88884 1.21351 1.07075 0.90329 1.25504 1.00110 1.02199 0.98713 1.69849 1.21654 1.46659 1.23768 0.85130 0.79506 0.77623 0.77848 1.18781 1.22249 1.22539 1.21994 0.94399 0.97412 0.96917 1.22504 1.00407 0.99482 0.93852 1.22437 0.98934 0.94243 0.99644 1.22359 1.01411 0.97567 0.94604 1.22183 1.00894 0.94590 0.97708 1.24223 0.96327 0.97719 0.92160 1.77103 1.22844 1.00969 1.13308 1.48679 1.48539 1.09016 1.07629 1.22391 1.04963 1.03078 0.75137 0.94233 0.89797 0.91510 0.87769 0.89537 0.76163 0.94531 0.93989 0.79494 0.94309 0.91731 0.91646 0.91516 0.90838 0.90722 0.90536 0.92086 0.91714 0.92105 0.78633 0.89155 0.87869 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.07 -1.43 5.39 29.85 0.16 -1.27 16 3 C 0.16 4.38 6.26 42.14 0.26 4.64 16 4 C -0.32 -10.48 6.13 -20.15 -0.12 -10.61 16 5 C 0.59 21.54 7.79 86.66 0.67 22.22 16 6 O -0.58 -23.04 14.53 -4.05 -0.06 -23.10 16 7 N -0.70 -24.22 4.04 -445.79 -1.80 -26.02 16 8 C 0.16 5.54 1.86 44.99 0.08 5.63 16 9 H 0.06 2.31 7.61 -2.39 -0.02 2.29 16 10 C 0.15 5.74 5.27 86.38 0.46 6.20 16 11 N -0.74 -37.23 5.43 -343.45 -1.87 -39.10 16 12 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 13 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 14 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 15 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 16 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 20 C -0.09 -2.45 2.96 -10.07 -0.03 -2.48 16 21 C -0.12 -3.13 6.19 31.67 0.20 -2.94 16 22 C -0.12 -2.33 6.91 31.89 0.22 -2.11 16 23 C -0.12 -2.58 6.83 31.67 0.22 -2.37 16 24 C -0.12 -2.85 5.62 31.32 0.18 -2.68 16 25 C 0.08 2.61 11.51 85.65 0.99 3.59 16 26 N -0.32 -9.89 12.50 -56.28 -0.70 -10.59 16 27 N -0.36 -8.96 3.98 -354.31 -1.41 -10.37 16 28 C 0.08 1.11 11.06 127.77 1.41 2.53 16 29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.57 7.71 -2.39 -0.02 1.55 16 33 H 0.09 2.43 6.50 -2.39 -0.02 2.41 16 34 H 0.40 13.32 7.50 -92.71 -0.70 12.63 16 35 H 0.04 1.44 6.30 -2.39 -0.02 1.42 16 36 H 0.04 1.56 6.12 -2.39 -0.01 1.54 16 37 H 0.37 20.56 7.33 -92.71 -0.68 19.88 16 38 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.81 5.85 -2.39 -0.01 1.79 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 1.62 5.85 -2.39 -0.01 1.61 16 48 H 0.20 5.52 7.51 -2.91 -0.02 5.50 16 49 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.12 0.86 7.63 -2.39 -0.02 0.85 16 Total: -1.00 -73.36 403.32 2.75 -70.61 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: -0.43 Total: 47.22 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.71 Total: 2.73 kcal Atomic # 7 Polarization: -140.27 SS G_CDS: -5.50 Total: -145.77 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -73.36 2.75 -70.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270415559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.763 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds