Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50708 * 109.47372 * 2 1 4 4 N 1.33318 * 126.10897 * 270.00450 * 3 2 1 5 5 C 1.30861 * 109.68035 * 179.72160 * 4 3 2 6 6 N 1.34489 * 109.16810 * 0.45004 * 5 4 3 7 7 H 0.97001 * 126.47641 * 179.82966 * 6 5 4 8 8 C 1.36661 * 126.10370 * 89.99587 * 3 2 1 9 9 C 1.46767 * 126.84844 * 0.02939 * 8 3 2 10 10 O 1.21687 * 119.99660 * 359.97438 * 9 8 3 11 11 N 1.34771 * 120.00319 * 179.97438 * 9 8 3 12 12 C 1.46504 * 119.99990 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46970 * 35.00244 * 12 11 9 14 14 C 1.53002 * 109.47004 * 155.00072 * 12 11 9 15 15 N 1.46502 * 109.47223 * 305.00037 * 14 12 11 16 16 C 1.36938 * 120.00161 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00113 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47208 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.46747 * 209.99943 * 20 18 16 23 23 H 1.48494 * 109.47033 * 329.99692 * 20 18 16 24 24 C 1.53001 * 109.46982 * 274.99701 * 12 11 9 25 25 C 1.53003 * 109.46707 * 179.97438 * 24 12 11 26 26 C 1.53004 * 109.46937 * 180.02562 * 25 24 12 27 27 C 1.53002 * 109.47233 * 60.00073 * 26 25 24 28 28 C 1.53003 * 109.46942 * 300.00188 * 27 26 25 29 29 C 1.52998 * 109.46626 * 60.00466 * 24 12 11 30 30 H 1.08999 * 109.47051 * 59.99503 * 1 2 3 31 31 H 1.08997 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47087 * 299.99879 * 1 2 3 33 33 H 1.08998 * 109.47383 * 240.00834 * 2 1 3 34 34 H 1.08996 * 109.47876 * 120.00113 * 2 1 3 35 35 H 1.08005 * 125.41349 * 180.27093 * 5 4 3 36 36 H 0.96999 * 120.00029 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47319 * 64.99843 * 14 12 11 38 38 H 1.09001 * 109.47012 * 185.00281 * 14 12 11 39 39 H 0.96998 * 120.00063 * 0.02562 * 15 14 12 40 40 H 0.96999 * 120.00058 * 180.02562 * 19 18 16 41 41 H 1.08989 * 109.47403 * 300.00365 * 24 12 11 42 42 H 1.09001 * 109.47149 * 300.00484 * 25 24 12 43 43 H 1.08993 * 109.47300 * 60.00554 * 25 24 12 44 44 H 1.09006 * 109.46911 * 300.00325 * 26 25 24 45 45 H 1.08999 * 109.47137 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.47090 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47117 * 59.99844 * 27 26 25 48 48 H 1.09001 * 109.46934 * 299.99768 * 28 27 26 49 49 H 1.09002 * 109.47125 * 179.97438 * 28 27 26 50 50 H 1.08999 * 109.47375 * 299.99588 * 29 24 12 51 51 H 1.09001 * 109.47552 * 60.00190 * 29 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2942 2.1616 -1.0771 5 6 2.7070 3.3470 -0.7070 6 7 2.7341 3.4056 0.6364 7 1 3.0030 4.1662 1.1751 8 6 2.3007 2.1801 1.1042 9 6 2.1578 1.7743 2.5073 10 8 1.7625 0.6562 2.7800 11 7 2.4642 2.6399 3.4938 12 6 2.3210 2.2349 4.8944 13 1 2.5726 1.1791 4.9949 14 6 3.2629 3.0687 5.7653 15 7 4.6322 2.9467 5.2591 16 6 5.6548 3.6097 5.8837 17 1 5.4516 4.2229 6.7492 18 6 6.9521 3.4945 5.4037 19 7 7.1996 2.7476 4.3486 20 14 8.3469 4.3995 6.2553 21 1 8.9260 3.5333 7.3131 22 1 9.3974 4.7371 5.2616 23 1 7.8257 5.6478 6.8680 24 6 0.8763 2.4602 5.3452 25 6 0.7266 2.0366 6.8078 26 6 -0.7182 2.2613 7.2585 27 6 -1.6598 1.4276 6.3871 28 6 -1.5100 1.8511 4.9246 29 6 -0.0655 1.6263 4.4744 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9848 4.1495 -1.3743 36 1 2.7790 3.5313 3.2764 37 1 2.9560 4.1142 5.7346 38 1 3.2220 2.7081 6.7931 39 1 4.8146 2.3963 4.4815 40 1 8.1062 2.6669 4.0134 41 1 0.6248 3.5159 5.2447 42 1 0.9781 0.9808 6.9079 43 1 1.3976 2.6303 7.4285 44 1 -0.9700 3.3172 7.1583 45 1 -0.8248 1.9600 8.3006 46 1 -2.6890 1.5881 6.7079 47 1 -1.4080 0.3718 6.4873 48 1 -1.7618 2.9069 4.8244 49 1 -2.1804 1.2569 4.3037 50 1 0.0411 1.9276 3.4323 51 1 0.1860 0.5705 4.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271353550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = -0.524845 kcal Electronic energy + Delta-G solvation = -30444.168409 eV Core-core repulsion = 26571.243672 eV Total energy + Delta-G solvation = -3872.924736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16929 -39.88234 -37.97935 -35.81601 -34.29036 -33.53122 -32.22922 -31.38590 -30.66759 -30.50925 -28.93525 -27.04974 -24.36947 -23.66577 -22.82501 -22.51680 -21.76145 -21.31640 -20.13353 -19.79280 -19.39288 -18.56950 -17.19827 -16.07507 -15.94440 -15.81127 -15.21815 -14.73594 -14.66006 -14.18441 -14.12963 -13.92570 -13.87938 -13.75183 -13.59171 -13.31216 -13.24964 -13.06520 -12.39419 -12.25006 -12.07692 -11.95069 -11.73966 -11.37469 -11.30359 -11.02280 -10.92605 -10.90870 -10.86889 -10.70637 -10.48310 -10.27005 -10.22016 -10.09101 -9.96914 -9.85821 -9.75215 -9.57530 -8.99105 -8.74278 -8.37091 -7.04397 -5.85910 -3.16333 1.42132 2.90775 2.96354 3.35582 3.38095 3.42083 3.43475 3.53103 4.45341 4.48541 4.74714 4.81062 4.84317 4.93918 5.05903 5.15765 5.22680 5.34269 5.41276 5.46302 5.52539 5.58176 5.59140 5.61937 5.63840 5.71112 5.73138 5.76172 5.83163 5.89431 5.95692 6.07465 6.10951 6.12138 6.20301 6.27504 6.30103 6.33719 6.34893 6.40896 6.43471 6.49116 6.58883 6.63338 6.69512 6.87528 7.22803 7.60280 7.69162 7.98066 8.31461 8.41091 9.43502 9.98897 10.34096 11.36032 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.004756 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.250585 B = 5885.377068 C = 8948.790097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 C 0.094 3.906 4 N -0.501 5.501 5 C 0.213 3.787 6 N -0.551 5.551 7 H 0.424 0.576 8 C -0.082 4.082 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.709 5.709 12 C 0.145 3.855 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.731 5.731 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.091 4.091 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.104 4.104 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.213 0.787 36 H 0.396 0.604 37 H 0.022 0.978 38 H 0.038 0.962 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 0.895 -4.230 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 C -0.041 4.041 4 N -0.220 5.220 5 C -0.071 4.071 6 N -0.155 5.155 7 H 0.263 0.737 8 C -0.198 4.198 9 C 0.382 3.618 10 O -0.399 6.399 11 N -0.359 5.359 12 C 0.040 3.960 13 H 0.108 0.892 14 C 0.016 3.984 15 N -0.376 5.376 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.111 4.111 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.142 4.142 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.230 0.770 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.250 -0.088 -4.692 17.877 hybrid contribution 1.551 1.722 1.072 2.553 sum -15.700 1.634 -3.620 16.194 Atomic orbital electron populations 1.21594 0.94652 1.01476 1.01566 1.20025 0.95934 0.88936 1.03669 1.20975 0.99522 0.96923 0.86663 1.70092 1.18827 1.02542 1.30578 1.25058 1.01926 0.97937 0.82185 1.43359 1.49834 1.13526 1.08797 0.73687 1.21061 1.15091 0.88241 0.95407 1.16728 0.77601 0.85026 0.82474 1.90799 1.46728 1.19658 1.82712 1.45839 1.67058 1.16648 1.06306 1.21348 0.94160 1.01026 0.79460 0.89196 1.21021 0.85604 0.96183 0.95609 1.42362 1.01039 1.58527 1.35715 1.19202 0.87045 1.22193 1.09112 0.91158 1.24748 0.97402 1.00352 0.98171 1.69667 1.19960 1.42948 1.25234 0.86205 0.82312 0.79214 0.78519 1.21618 1.21786 1.20766 1.21513 0.94389 0.99933 0.95249 1.21605 0.96326 1.01979 0.95357 1.21509 0.95195 0.99915 0.98768 1.21534 0.98707 1.00027 0.95341 1.21555 0.97513 1.00661 0.95940 1.21609 0.93046 1.00856 0.98659 0.93169 0.92437 0.92613 0.90937 0.88665 0.77099 0.77032 0.96027 0.94450 0.78063 0.93443 0.91478 0.91715 0.91236 0.92306 0.92265 0.92702 0.92053 0.92718 0.92532 0.92325 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.89 37.15 0.37 -1.27 16 2 C -0.05 -0.66 5.93 -27.88 -0.17 -0.82 16 3 C 0.09 1.42 6.40 -82.51 -0.53 0.89 16 4 N -0.50 -7.25 11.20 -10.64 -0.12 -7.37 16 5 C 0.21 2.41 13.00 -90.58 -1.18 1.23 16 6 N -0.55 -6.44 6.07 -10.79 -0.07 -6.51 16 7 H 0.42 3.94 8.32 -40.82 -0.34 3.60 16 8 C -0.08 -1.21 7.08 -82.14 -0.58 -1.79 16 9 C 0.60 9.49 6.14 -12.82 -0.08 9.41 16 10 O -0.52 -9.18 11.94 5.20 0.06 -9.12 16 11 N -0.71 -10.67 4.40 -55.08 -0.24 -10.91 16 12 C 0.14 2.27 2.00 -67.93 -0.14 2.14 16 13 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 14 C 0.14 2.64 5.32 -4.04 -0.02 2.62 16 15 N -0.73 -17.34 5.43 -59.91 -0.33 -17.66 16 16 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.09 -1.18 1.96 -90.62 -0.18 -1.36 16 25 C -0.11 -1.39 4.85 -26.73 -0.13 -1.52 16 26 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 27 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 28 C -0.12 -1.32 5.92 -26.75 -0.16 -1.48 16 29 C -0.10 -1.36 3.72 -26.75 -0.10 -1.46 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.45 6.48 -51.93 -0.34 1.11 16 35 H 0.21 1.41 8.06 -52.48 -0.42 0.98 16 36 H 0.40 5.60 7.85 -40.82 -0.32 5.28 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 39 H 0.39 9.87 7.33 -40.82 -0.30 9.57 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 0.86 8.14 -51.94 -0.42 0.43 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.84 5.78 -51.93 -0.30 0.54 16 51 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -31.90 396.69 -10.99 -42.89 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -8.53 Total: 15.81 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.45 Total: -3.19 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.03 Total: -69.10 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.90 -10.99 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.369 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds