Wall clock time and date at job start Tue Mar 31 2020 18:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50708 * 109.47372 * 2 1 4 4 N 1.33318 * 126.10897 * 270.00450 * 3 2 1 5 5 C 1.30861 * 109.68035 * 179.72160 * 4 3 2 6 6 N 1.34489 * 109.16810 * 0.45004 * 5 4 3 7 7 H 0.97001 * 126.47641 * 179.82966 * 6 5 4 8 8 C 1.36661 * 126.10370 * 89.99587 * 3 2 1 9 9 C 1.46767 * 126.84844 * 0.02939 * 8 3 2 10 10 O 1.21687 * 119.99660 * 359.97438 * 9 8 3 11 11 N 1.34771 * 120.00319 * 179.97438 * 9 8 3 12 12 C 1.46504 * 119.99990 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46970 * 35.00244 * 12 11 9 14 14 C 1.53002 * 109.47004 * 155.00072 * 12 11 9 15 15 N 1.46502 * 109.47223 * 305.00037 * 14 12 11 16 16 C 1.36938 * 120.00161 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00113 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47208 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.46747 * 209.99943 * 20 18 16 23 23 H 1.48494 * 109.47033 * 329.99692 * 20 18 16 24 24 C 1.53001 * 109.46982 * 274.99701 * 12 11 9 25 25 C 1.53003 * 109.46707 * 179.97438 * 24 12 11 26 26 C 1.53004 * 109.46937 * 180.02562 * 25 24 12 27 27 C 1.53002 * 109.47233 * 60.00073 * 26 25 24 28 28 C 1.53003 * 109.46942 * 300.00188 * 27 26 25 29 29 C 1.52998 * 109.46626 * 60.00466 * 24 12 11 30 30 H 1.08999 * 109.47051 * 59.99503 * 1 2 3 31 31 H 1.08997 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47087 * 299.99879 * 1 2 3 33 33 H 1.08998 * 109.47383 * 240.00834 * 2 1 3 34 34 H 1.08996 * 109.47876 * 120.00113 * 2 1 3 35 35 H 1.08005 * 125.41349 * 180.27093 * 5 4 3 36 36 H 0.96999 * 120.00029 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47319 * 64.99843 * 14 12 11 38 38 H 1.09001 * 109.47012 * 185.00281 * 14 12 11 39 39 H 0.96998 * 120.00063 * 0.02562 * 15 14 12 40 40 H 0.96999 * 120.00058 * 180.02562 * 19 18 16 41 41 H 1.08989 * 109.47403 * 300.00365 * 24 12 11 42 42 H 1.09001 * 109.47149 * 300.00484 * 25 24 12 43 43 H 1.08993 * 109.47300 * 60.00554 * 25 24 12 44 44 H 1.09006 * 109.46911 * 300.00325 * 26 25 24 45 45 H 1.08999 * 109.47137 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.47090 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47117 * 59.99844 * 27 26 25 48 48 H 1.09001 * 109.46934 * 299.99768 * 28 27 26 49 49 H 1.09002 * 109.47125 * 179.97438 * 28 27 26 50 50 H 1.08999 * 109.47375 * 299.99588 * 29 24 12 51 51 H 1.09001 * 109.47552 * 60.00190 * 29 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2942 2.1616 -1.0771 5 6 2.7070 3.3470 -0.7070 6 7 2.7341 3.4056 0.6364 7 1 3.0030 4.1662 1.1751 8 6 2.3007 2.1801 1.1042 9 6 2.1578 1.7743 2.5073 10 8 1.7625 0.6562 2.7800 11 7 2.4642 2.6399 3.4938 12 6 2.3210 2.2349 4.8944 13 1 2.5726 1.1791 4.9949 14 6 3.2629 3.0687 5.7653 15 7 4.6322 2.9467 5.2591 16 6 5.6548 3.6097 5.8837 17 1 5.4516 4.2229 6.7492 18 6 6.9521 3.4945 5.4037 19 7 7.1996 2.7476 4.3486 20 14 8.3469 4.3995 6.2553 21 1 8.9260 3.5333 7.3131 22 1 9.3974 4.7371 5.2616 23 1 7.8257 5.6478 6.8680 24 6 0.8763 2.4602 5.3452 25 6 0.7266 2.0366 6.8078 26 6 -0.7182 2.2613 7.2585 27 6 -1.6598 1.4276 6.3871 28 6 -1.5100 1.8511 4.9246 29 6 -0.0655 1.6263 4.4744 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9848 4.1495 -1.3743 36 1 2.7790 3.5313 3.2764 37 1 2.9560 4.1142 5.7346 38 1 3.2220 2.7081 6.7931 39 1 4.8146 2.3963 4.4815 40 1 8.1062 2.6669 4.0134 41 1 0.6248 3.5159 5.2447 42 1 0.9781 0.9808 6.9079 43 1 1.3976 2.6303 7.4285 44 1 -0.9700 3.3172 7.1583 45 1 -0.8248 1.9600 8.3006 46 1 -2.6890 1.5881 6.7079 47 1 -1.4080 0.3718 6.4873 48 1 -1.7618 2.9069 4.8244 49 1 -2.1804 1.2569 4.3037 50 1 0.0411 1.9276 3.4323 51 1 0.1860 0.5705 4.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271353550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:45 Heat of formation + Delta-G solvation = -19.708881 kcal Electronic energy + Delta-G solvation = -30445.000291 eV Core-core repulsion = 26571.243672 eV Total energy + Delta-G solvation = -3873.756619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.20994 -41.08767 -39.08345 -37.24192 -35.62019 -34.96182 -33.45209 -32.74998 -32.07268 -31.53058 -30.00374 -28.54379 -25.86491 -24.99358 -23.98993 -23.57602 -22.97188 -22.42343 -21.39380 -20.83230 -20.48188 -19.70584 -19.08322 -17.26920 -17.18511 -17.01729 -16.51099 -16.19185 -15.75556 -15.50579 -15.22774 -15.15179 -14.99810 -14.89968 -14.80779 -14.77541 -14.48624 -14.31230 -13.81057 -13.28570 -13.27240 -13.14060 -12.89705 -12.87329 -12.70562 -12.44101 -12.38077 -12.10117 -12.00211 -11.94012 -11.84484 -11.79389 -11.46842 -11.33215 -11.15496 -11.00263 -10.99898 -10.84955 -10.72236 -9.98763 -9.47063 -9.02898 -7.96260 -5.25946 0.32166 1.46738 1.48345 1.56196 1.87571 1.96249 2.19559 2.33243 2.54185 3.38338 3.51709 3.57819 3.75610 3.85861 3.90220 4.05411 4.14429 4.16058 4.21323 4.28403 4.46388 4.49228 4.52368 4.56187 4.60832 4.65290 4.68957 4.71725 4.73766 4.77980 4.80680 4.90661 5.01865 5.09232 5.14935 5.21093 5.25331 5.29949 5.31372 5.33129 5.36003 5.43480 5.45995 5.50642 5.54624 5.58115 5.68117 6.23761 6.33215 6.48991 6.93724 7.17408 7.31649 8.04775 8.28500 9.26359 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.004756 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.250585 B = 5885.377068 C = 8948.790097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.048 4.048 3 C 0.082 3.918 4 N -0.530 5.530 5 C 0.233 3.767 6 N -0.543 5.543 7 H 0.435 0.565 8 C -0.107 4.107 9 C 0.593 3.407 10 O -0.546 6.546 11 N -0.705 5.705 12 C 0.156 3.844 13 H 0.060 0.940 14 C 0.147 3.853 15 N -0.742 5.742 16 C -0.242 4.242 17 H 0.079 0.921 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.292 1.292 22 H -0.298 1.298 23 H -0.266 1.266 24 C -0.080 4.080 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.095 4.095 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.401 0.599 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.043 0.957 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 2.860 -3.843 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.053 4.053 4 N -0.251 5.251 5 C -0.051 4.051 6 N -0.148 5.148 7 H 0.276 0.724 8 C -0.223 4.223 9 C 0.381 3.619 10 O -0.424 6.424 11 N -0.354 5.354 12 C 0.051 3.949 13 H 0.078 0.922 14 C 0.020 3.980 15 N -0.385 5.385 16 C -0.374 4.374 17 H 0.097 0.903 18 C -0.263 4.263 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.219 1.219 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.153 4.153 29 C -0.132 4.132 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.276 0.724 36 H 0.236 0.764 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.062 0.938 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.532 1.917 -4.259 19.112 hybrid contribution 1.907 1.111 0.919 2.390 sum -16.625 3.028 -3.340 17.226 Atomic orbital electron populations 1.21503 0.93333 1.02367 1.01033 1.20018 0.97078 0.88667 1.02910 1.21217 0.99449 0.97438 0.87178 1.70106 1.20477 1.03885 1.30588 1.26032 0.98863 0.97900 0.82308 1.43330 1.49388 1.12930 1.09201 0.72361 1.20890 1.17005 0.89770 0.94657 1.16906 0.77153 0.84724 0.83113 1.90782 1.47841 1.20612 1.83200 1.45747 1.67001 1.16768 1.05929 1.21152 0.95403 0.98716 0.79623 0.92166 1.21147 0.83556 0.97335 0.95947 1.42527 1.02690 1.57994 1.35282 1.19613 0.87771 1.21234 1.08747 0.90298 1.25504 0.99831 1.01826 0.99161 1.69830 1.19833 1.45092 1.27091 0.85191 0.79214 0.78516 0.77127 1.21928 1.22481 1.19072 1.21428 0.92188 1.00519 0.95871 1.21604 0.97956 1.01208 0.94483 1.21489 0.93518 1.00522 0.99393 1.21529 0.99766 0.99588 0.94541 1.21528 0.95710 1.01342 0.96693 1.21458 0.94677 0.99250 0.97859 0.92674 0.90865 0.93952 0.90336 0.90625 0.72412 0.76429 0.94435 0.94120 0.79525 0.94213 0.90334 0.92848 0.91378 0.91383 0.91052 0.90821 0.92733 0.91774 0.92213 0.93818 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.89 71.98 0.71 -2.34 16 2 C -0.05 -1.38 5.93 29.85 0.18 -1.21 16 3 C 0.08 2.51 6.40 41.97 0.27 2.78 16 4 N -0.53 -14.87 11.20 -187.58 -2.10 -16.98 16 5 C 0.23 4.79 13.00 180.33 2.35 7.13 16 6 N -0.54 -12.15 6.07 -188.04 -1.14 -13.29 16 7 H 0.44 7.53 8.32 -92.71 -0.77 6.76 16 8 C -0.11 -3.21 7.08 40.01 0.28 -2.93 16 9 C 0.59 19.62 6.14 86.47 0.53 20.15 16 10 O -0.55 -20.30 11.94 -4.31 -0.05 -20.36 16 11 N -0.70 -21.61 4.40 -446.41 -1.96 -23.57 16 12 C 0.16 4.98 2.00 44.99 0.09 5.07 16 13 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 14 C 0.15 5.31 5.32 86.38 0.46 5.77 16 15 N -0.74 -35.31 5.43 -343.44 -1.87 -37.17 16 16 C -0.24 -12.77 9.99 84.03 0.84 -11.93 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 19 N -0.97 -57.85 13.06 21.65 0.28 -57.57 16 20 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.08 -2.04 1.96 -10.79 -0.02 -2.06 16 25 C -0.11 -2.66 4.85 30.60 0.15 -2.51 16 26 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 27 C -0.12 -2.15 5.92 30.60 0.18 -1.97 16 28 C -0.12 -2.39 5.92 30.58 0.18 -2.21 16 29 C -0.09 -2.49 3.72 30.58 0.11 -2.37 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.44 6.48 -2.39 -0.02 2.43 16 35 H 0.26 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.40 11.31 7.85 -92.71 -0.73 10.59 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.48 6.71 -2.39 -0.02 1.47 16 39 H 0.37 19.54 7.33 -92.71 -0.68 18.86 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.60 6.54 -2.39 -0.02 1.58 16 44 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.04 1.27 5.78 -2.39 -0.01 1.26 16 51 H 0.05 1.48 7.53 -2.39 -0.02 1.47 16 Total: -1.00 -69.70 396.69 0.92 -68.78 By element: Atomic # 1 Polarization: 48.67 SS G_CDS: -1.22 Total: 47.44 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.96 Total: 6.05 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -6.79 Total: -148.58 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.70 0.92 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.071 kcal (2) G-P(sol) polarization free energy of solvation -69.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds