Wall clock time and date at job start Tue Mar 31 2020 19:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 C 1.50696 * 109.47385 * 119.99459 * 2 1 3 5 5 C 1.39668 * 126.07306 * 275.00702 * 4 2 1 6 6 C 1.38403 * 105.35956 * 179.71818 * 5 4 2 7 7 C 1.47166 * 126.88760 * 180.26264 * 6 5 4 8 8 O 1.21624 * 120.00455 * 185.71623 * 7 6 5 9 9 N 1.34785 * 119.99726 * 5.72027 * 7 6 5 10 10 C 1.46497 * 119.99852 * 185.15005 * 9 7 6 11 11 H 1.09001 * 110.01944 * 34.94089 * 10 9 7 12 12 C 1.53871 * 110.03106 * 273.54364 * 10 9 7 13 13 C 1.54268 * 106.59954 * 240.71538 * 12 10 9 14 14 C 1.54893 * 104.19538 * 23.61242 * 13 12 10 15 15 C 1.54275 * 110.03043 * 156.37804 * 10 9 7 16 16 H 1.08998 * 110.48455 * 214.35530 * 15 10 9 17 17 C 1.53004 * 110.48476 * 336.99647 * 15 10 9 18 18 N 1.46499 * 109.46977 * 185.00006 * 17 15 10 19 19 C 1.36936 * 120.00359 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99293 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00427 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47128 * 59.99532 * 23 21 19 25 25 H 1.48495 * 109.46974 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46860 * 299.99379 * 23 21 19 27 27 N 1.36600 * 106.23382 * 0.39934 * 6 5 4 28 28 C 1.46494 * 125.19284 * 179.84392 * 27 6 5 29 29 N 1.28439 * 109.61509 * 359.58023 * 27 6 5 30 30 H 1.09008 * 109.46876 * 60.00404 * 1 2 3 31 31 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47382 * 300.00100 * 1 2 3 33 33 H 1.09001 * 109.47765 * 239.99966 * 2 1 3 34 34 H 1.09001 * 109.46978 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47427 * 299.99588 * 3 2 1 36 36 H 1.09001 * 109.47537 * 60.00004 * 3 2 1 37 37 H 1.07994 * 127.32070 * 0.02562 * 5 4 2 38 38 H 0.96998 * 119.99772 * 5.14374 * 9 7 6 39 39 H 1.08998 * 110.03548 * 0.02562 * 12 10 9 40 40 H 1.09003 * 110.03101 * 121.38548 * 12 10 9 41 41 H 1.09002 * 110.48920 * 142.28867 * 13 12 10 42 42 H 1.08998 * 110.48899 * 264.80119 * 13 12 10 43 43 H 1.09003 * 110.75574 * 80.36724 * 14 13 12 44 44 H 1.08999 * 110.75937 * 203.56157 * 14 13 12 45 45 H 1.09000 * 109.46788 * 304.99967 * 17 15 10 46 46 H 1.08993 * 109.47364 * 64.99974 * 17 15 10 47 47 H 0.97003 * 119.99664 * 0.02562 * 18 17 15 48 48 H 0.96998 * 120.00394 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.47539 * 265.82737 * 28 27 6 50 50 H 1.08993 * 109.47312 * 145.82848 * 28 27 6 51 51 H 1.09008 * 109.47240 * 25.82780 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.2136 -0.1403 2.4926 6 6 2.6793 -1.1673 3.2952 7 6 3.0211 -1.0860 4.7243 8 8 3.5193 -2.0429 5.2859 9 7 2.7820 0.0489 5.4109 10 6 3.2241 0.1703 6.8022 11 1 4.1681 -0.3567 6.9411 12 6 2.1549 -0.4056 7.7471 13 6 1.7066 0.7520 8.6630 14 6 2.0459 2.0290 7.8548 15 6 3.3882 1.6578 7.1768 16 1 4.2162 1.7866 7.8738 17 6 3.6064 2.5051 5.9216 18 7 3.8779 3.8915 6.3094 19 6 4.1070 4.8392 5.3479 20 1 4.0880 4.5643 4.3035 21 6 4.3647 6.1527 5.7153 22 7 4.3884 6.4874 6.9880 23 14 4.6766 7.4455 4.4035 24 1 3.4898 7.5473 3.5168 25 1 4.9251 8.7583 5.0516 26 1 5.8636 7.0585 3.5995 27 7 2.7611 -2.2708 2.4942 28 6 3.2134 -3.5956 2.9257 29 7 2.3757 -1.9708 1.3063 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.0252 0.8829 2.7822 38 1 2.3172 0.7854 4.9836 39 1 1.3073 -0.7758 7.1705 40 1 2.5800 -1.2121 8.3446 41 1 0.6348 0.6947 8.8534 42 1 2.2613 0.7332 9.6010 43 1 1.2779 2.2287 7.1075 44 1 2.1690 2.8849 8.5184 45 1 4.4544 2.1120 5.3608 46 1 2.7120 2.4703 5.2996 47 1 3.8960 4.1380 7.2474 48 1 4.5681 7.4053 7.2448 49 1 4.2784 -3.7014 2.7187 50 1 2.6601 -4.3627 2.3840 51 1 3.0383 -3.7087 3.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272323021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:44 Heat of formation + Delta-G solvation = 34.600982 kcal Electronic energy + Delta-G solvation = -29699.143878 eV Core-core repulsion = 25827.742312 eV Total energy + Delta-G solvation = -3871.401566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.66416 -39.97922 -37.93758 -36.05763 -34.43652 -33.77487 -32.37649 -31.45352 -31.01123 -28.63063 -27.67197 -27.23731 -26.84559 -24.60433 -23.58369 -22.60010 -22.35658 -20.70434 -20.34569 -19.51901 -19.12370 -17.97377 -17.07198 -16.46120 -16.38587 -15.72456 -15.07881 -14.96503 -14.82394 -14.43170 -14.32762 -14.19804 -13.97639 -13.69630 -13.61670 -13.36914 -13.10089 -12.87020 -12.71435 -12.60267 -12.33732 -12.19007 -11.61318 -11.53002 -11.32862 -11.29395 -11.24194 -10.91322 -10.88319 -10.82165 -10.60721 -10.53839 -10.39981 -10.36893 -10.06272 -10.02816 -9.70937 -9.28936 -8.97823 -8.94185 -8.89516 -6.95700 -5.79055 -3.07991 1.19310 2.27427 2.46102 3.14646 3.20596 3.42596 3.47387 3.48029 4.23078 4.44044 4.55486 4.67659 4.76551 4.78570 4.87409 5.00105 5.02956 5.07220 5.18904 5.26732 5.36435 5.41383 5.45373 5.50364 5.55315 5.56051 5.61341 5.62777 5.73646 5.76570 5.80984 5.83217 5.88860 5.92158 6.02335 6.05330 6.13811 6.18678 6.23140 6.24472 6.39997 6.46207 6.50730 6.56815 6.63655 6.70697 6.76738 7.43482 7.66697 7.96726 8.10310 8.39587 9.51113 10.07939 10.42711 11.43637 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.003884 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.204934 B = 7206.645796 C = 9770.331477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 C -0.146 4.146 4 C 0.033 3.967 5 C -0.178 4.178 6 C -0.036 4.036 7 C 0.592 3.408 8 O -0.548 6.548 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.090 0.910 12 C -0.130 4.130 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.090 0.910 17 C 0.164 3.836 18 N -0.729 5.729 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.260 5.260 28 C 0.086 3.914 29 N -0.279 5.279 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.161 0.839 38 H 0.408 0.592 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.020 0.980 46 H 0.014 0.986 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -17.606 -6.698 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.123 4.123 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.377 3.623 8 O -0.427 6.427 9 N -0.352 5.352 10 C 0.046 3.954 11 H 0.108 0.892 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.108 0.892 17 C 0.036 3.964 18 N -0.373 5.373 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.047 5.047 28 C -0.054 4.054 29 N -0.112 5.112 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.179 0.821 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.032 0.968 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.168 -19.329 -7.000 21.771 hybrid contribution 0.046 1.845 -0.116 1.849 sum -7.122 -17.484 -7.116 20.175 Atomic orbital electron populations 1.21816 0.93995 1.01925 1.02224 1.19423 0.95571 0.95128 0.92758 1.21853 1.01589 0.94432 1.02548 1.21931 1.04009 0.89998 0.96388 1.22144 1.05935 0.99641 0.92943 1.21402 1.11750 0.89256 0.94053 1.16913 0.78222 0.83407 0.83758 1.90747 1.45231 1.36326 1.70346 1.45991 1.58763 1.16670 1.13787 1.21692 0.97791 0.96798 0.79091 0.89225 1.22564 0.98510 0.98191 0.97633 1.22393 1.00683 0.94875 0.98378 1.22514 0.96344 0.97115 0.99073 1.22495 0.99005 0.92019 0.99120 0.89184 1.20578 0.96869 0.85992 0.92982 1.42318 1.85567 1.02627 1.06785 1.19160 1.40569 0.88729 0.88795 0.91274 1.24720 1.02645 0.97332 0.96043 1.69642 1.56111 1.18142 1.14225 0.86290 0.78100 0.81188 0.80756 1.21205 1.21691 1.21274 1.45489 1.44729 1.09580 1.04881 1.22327 1.01165 0.78664 1.03211 1.73094 1.17234 1.17953 1.02914 0.92011 0.92725 0.92208 0.89994 0.92244 0.91916 0.91796 0.82111 0.75378 0.91537 0.91348 0.91884 0.91581 0.91418 0.90695 0.96190 0.96799 0.78173 0.93445 0.89860 0.89230 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 37.16 0.34 -0.89 16 2 C -0.01 -0.09 3.38 -91.77 -0.31 -0.40 16 3 C -0.15 -1.39 8.79 37.16 0.33 -1.06 16 4 C 0.03 0.41 6.13 -82.47 -0.51 -0.09 16 5 C -0.18 -2.24 9.64 -38.99 -0.38 -2.62 16 6 C -0.04 -0.49 6.96 -82.06 -0.57 -1.06 16 7 C 0.59 8.35 7.77 -12.63 -0.10 8.25 16 8 O -0.55 -8.61 14.41 5.26 0.08 -8.54 16 9 N -0.70 -9.17 4.36 -53.87 -0.23 -9.40 16 10 C 0.15 2.01 3.06 -66.81 -0.20 1.80 16 11 H 0.09 1.27 7.68 -51.93 -0.40 0.87 16 12 C -0.13 -1.53 6.59 -25.61 -0.17 -1.70 16 13 C -0.13 -1.44 6.83 -25.07 -0.17 -1.61 16 14 C -0.11 -1.58 6.19 -24.74 -0.15 -1.73 16 15 C -0.11 -1.61 2.85 -88.95 -0.25 -1.86 16 16 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 17 C 0.16 3.05 4.72 -4.04 -0.02 3.03 16 18 N -0.73 -17.55 5.49 -59.91 -0.33 -17.88 16 19 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 N -0.26 -3.39 3.75 -63.88 -0.24 -3.63 16 28 C 0.09 0.85 10.89 59.84 0.65 1.50 16 29 N -0.28 -3.76 11.90 33.64 0.40 -3.36 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.62 7.37 -51.93 -0.38 0.24 16 37 H 0.16 1.80 7.09 -52.49 -0.37 1.43 16 38 H 0.41 5.10 5.58 -40.82 -0.23 4.87 16 39 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.01 0.26 6.40 -51.93 -0.33 -0.08 16 47 H 0.38 9.77 7.64 -40.82 -0.31 9.46 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.11 1.15 6.20 -51.92 -0.32 0.83 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -31.85 406.25 -8.90 -40.74 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.64 Total: 11.38 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.76 Total: -5.54 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.32 Total: -61.12 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.85 -8.90 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.346 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds