Wall clock time and date at job start Tue Mar 31 2020 19:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 C 1.50696 * 109.47385 * 119.99459 * 2 1 3 5 5 C 1.39668 * 126.07306 * 275.00702 * 4 2 1 6 6 C 1.38403 * 105.35956 * 179.71818 * 5 4 2 7 7 C 1.47166 * 126.88760 * 180.26264 * 6 5 4 8 8 O 1.21624 * 120.00455 * 185.71623 * 7 6 5 9 9 N 1.34785 * 119.99726 * 5.72027 * 7 6 5 10 10 C 1.46497 * 119.99852 * 185.15005 * 9 7 6 11 11 H 1.09001 * 110.01944 * 34.94089 * 10 9 7 12 12 C 1.53871 * 110.03106 * 273.54364 * 10 9 7 13 13 C 1.54268 * 106.59954 * 240.71538 * 12 10 9 14 14 C 1.54893 * 104.19538 * 23.61242 * 13 12 10 15 15 C 1.54275 * 110.03043 * 156.37804 * 10 9 7 16 16 H 1.08998 * 110.48455 * 214.35530 * 15 10 9 17 17 C 1.53004 * 110.48476 * 336.99647 * 15 10 9 18 18 N 1.46499 * 109.46977 * 185.00006 * 17 15 10 19 19 C 1.36936 * 120.00359 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99293 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00427 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00123 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47128 * 59.99532 * 23 21 19 25 25 H 1.48495 * 109.46974 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46860 * 299.99379 * 23 21 19 27 27 N 1.36600 * 106.23382 * 0.39934 * 6 5 4 28 28 C 1.46494 * 125.19284 * 179.84392 * 27 6 5 29 29 N 1.28439 * 109.61509 * 359.58023 * 27 6 5 30 30 H 1.09008 * 109.46876 * 60.00404 * 1 2 3 31 31 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47382 * 300.00100 * 1 2 3 33 33 H 1.09001 * 109.47765 * 239.99966 * 2 1 3 34 34 H 1.09001 * 109.46978 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47427 * 299.99588 * 3 2 1 36 36 H 1.09001 * 109.47537 * 60.00004 * 3 2 1 37 37 H 1.07994 * 127.32070 * 0.02562 * 5 4 2 38 38 H 0.96998 * 119.99772 * 5.14374 * 9 7 6 39 39 H 1.08998 * 110.03548 * 0.02562 * 12 10 9 40 40 H 1.09003 * 110.03101 * 121.38548 * 12 10 9 41 41 H 1.09002 * 110.48920 * 142.28867 * 13 12 10 42 42 H 1.08998 * 110.48899 * 264.80119 * 13 12 10 43 43 H 1.09003 * 110.75574 * 80.36724 * 14 13 12 44 44 H 1.08999 * 110.75937 * 203.56157 * 14 13 12 45 45 H 1.09000 * 109.46788 * 304.99967 * 17 15 10 46 46 H 1.08993 * 109.47364 * 64.99974 * 17 15 10 47 47 H 0.97003 * 119.99664 * 0.02562 * 18 17 15 48 48 H 0.96998 * 120.00394 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.47539 * 265.82737 * 28 27 6 50 50 H 1.08993 * 109.47312 * 145.82848 * 28 27 6 51 51 H 1.09008 * 109.47240 * 25.82780 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.2136 -0.1403 2.4926 6 6 2.6793 -1.1673 3.2952 7 6 3.0211 -1.0860 4.7243 8 8 3.5193 -2.0429 5.2859 9 7 2.7820 0.0489 5.4109 10 6 3.2241 0.1703 6.8022 11 1 4.1681 -0.3567 6.9411 12 6 2.1549 -0.4056 7.7471 13 6 1.7066 0.7520 8.6630 14 6 2.0459 2.0290 7.8548 15 6 3.3882 1.6578 7.1768 16 1 4.2162 1.7866 7.8738 17 6 3.6064 2.5051 5.9216 18 7 3.8779 3.8915 6.3094 19 6 4.1070 4.8392 5.3479 20 1 4.0880 4.5643 4.3035 21 6 4.3647 6.1527 5.7153 22 7 4.3884 6.4874 6.9880 23 14 4.6766 7.4455 4.4035 24 1 3.4898 7.5473 3.5168 25 1 4.9251 8.7583 5.0516 26 1 5.8636 7.0585 3.5995 27 7 2.7611 -2.2708 2.4942 28 6 3.2134 -3.5956 2.9257 29 7 2.3757 -1.9708 1.3063 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.0252 0.8829 2.7822 38 1 2.3172 0.7854 4.9836 39 1 1.3073 -0.7758 7.1705 40 1 2.5800 -1.2121 8.3446 41 1 0.6348 0.6947 8.8534 42 1 2.2613 0.7332 9.6010 43 1 1.2779 2.2287 7.1075 44 1 2.1690 2.8849 8.5184 45 1 4.4544 2.1120 5.3608 46 1 2.7120 2.4703 5.2996 47 1 3.8960 4.1380 7.2474 48 1 4.5681 7.4053 7.2448 49 1 4.2784 -3.7014 2.7187 50 1 2.6601 -4.3627 2.3840 51 1 3.0383 -3.7087 3.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272323021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:43 Heat of formation + Delta-G solvation = 15.667778 kcal Electronic energy + Delta-G solvation = -29699.964883 eV Core-core repulsion = 25827.742312 eV Total energy + Delta-G solvation = -3872.222572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.63599 -41.11391 -39.11720 -36.87988 -36.23313 -34.86391 -33.30196 -33.23994 -32.02864 -30.18489 -28.72286 -27.98588 -27.68293 -26.32563 -24.62745 -24.06902 -23.48430 -21.67979 -21.40171 -20.64661 -20.27044 -19.21274 -18.75353 -17.52559 -17.36654 -16.78169 -16.59975 -16.24313 -15.94694 -15.73419 -15.27245 -15.14321 -15.12321 -15.02279 -14.85134 -14.62361 -14.43554 -14.14588 -13.60964 -13.46284 -13.41273 -13.11691 -12.89127 -12.79209 -12.66899 -12.31448 -12.29292 -12.20569 -12.15345 -12.01823 -11.96539 -11.80654 -11.64379 -11.54575 -11.48266 -11.45004 -11.17491 -10.87538 -10.35946 -10.02483 -9.87977 -8.96352 -7.91748 -5.19954 0.15771 1.34539 1.49761 1.50213 1.52372 1.58255 2.07594 2.17115 2.58589 3.32980 3.39331 3.43485 3.55403 3.68255 3.87677 3.89721 4.13090 4.19792 4.25799 4.29602 4.31859 4.40180 4.44552 4.50300 4.53951 4.55755 4.57027 4.61827 4.69269 4.72115 4.78645 4.86186 4.87873 5.04359 5.05187 5.05808 5.11898 5.19281 5.23485 5.26746 5.37199 5.41513 5.44929 5.47117 5.49978 5.54101 5.54507 5.71294 6.29759 6.34809 6.95166 7.04650 7.37553 8.12878 8.36237 9.31522 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.003884 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.204934 B = 7206.645796 C = 9770.331477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.027 3.973 5 C -0.180 4.180 6 C -0.052 4.052 7 C 0.593 3.407 8 O -0.566 6.566 9 N -0.695 5.695 10 C 0.157 3.843 11 H 0.082 0.918 12 C -0.122 4.122 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.100 4.100 16 H 0.082 0.918 17 C 0.166 3.834 18 N -0.740 5.740 19 C -0.243 4.243 20 H 0.076 0.924 21 C -0.071 4.071 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.275 1.275 25 H -0.297 1.297 26 H -0.281 1.281 27 N -0.265 5.265 28 C 0.082 3.918 29 N -0.292 5.292 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.171 0.829 38 H 0.411 0.589 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.011 0.989 46 H 0.029 0.971 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.090 0.910 50 H 0.110 0.890 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -18.328 -7.738 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.129 4.129 5 C -0.209 4.209 6 C -0.181 4.181 7 C 0.380 3.620 8 O -0.446 6.446 9 N -0.347 5.347 10 C 0.052 3.948 11 H 0.100 0.900 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.119 4.119 16 H 0.101 0.899 17 C 0.039 3.961 18 N -0.383 5.383 19 C -0.375 4.375 20 H 0.094 0.906 21 C -0.264 4.264 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.224 1.224 26 H -0.208 1.208 27 N -0.052 5.052 28 C -0.057 4.057 29 N -0.126 5.126 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.189 0.811 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.047 0.953 47 H 0.207 0.793 48 H 0.059 0.941 49 H 0.109 0.891 50 H 0.129 0.871 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.168 -20.091 -8.066 23.139 hybrid contribution 0.366 1.995 0.171 2.036 sum -7.802 -18.096 -7.895 21.229 Atomic orbital electron populations 1.21785 0.92890 1.01833 1.03000 1.19520 0.96408 0.95078 0.91773 1.21845 1.00868 0.94252 1.03247 1.22380 1.03517 0.89829 0.97173 1.22340 1.05583 0.99987 0.92996 1.21438 1.12693 0.90026 0.93926 1.16974 0.77852 0.83240 0.83984 1.90735 1.46151 1.36948 1.70773 1.45926 1.58512 1.16577 1.13701 1.21614 0.98295 0.95247 0.79603 0.89965 1.22500 0.97904 0.98394 0.97287 1.22333 1.01857 0.92904 0.98121 1.22457 0.95493 0.97898 0.98999 1.22365 0.99513 0.92597 0.97409 0.89939 1.20695 0.96751 0.83874 0.94798 1.42509 1.85538 1.04347 1.05914 1.19573 1.38876 0.89425 0.89649 0.90626 1.25485 1.03589 0.99425 0.97882 1.69795 1.57976 1.18074 1.16045 0.85296 0.78256 0.78301 0.78444 1.20051 1.22373 1.20766 1.45789 1.44463 1.10269 1.04687 1.22501 1.01976 0.78080 1.03151 1.73088 1.17731 1.18561 1.03206 0.90203 0.93238 0.92461 0.89666 0.93335 0.90205 0.92120 0.81119 0.75033 0.91289 0.90394 0.90281 0.90712 0.91639 0.92375 0.97133 0.95325 0.79287 0.94080 0.89102 0.87105 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.17 71.98 0.66 -1.48 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 4 C 0.03 0.65 6.13 43.05 0.26 0.91 16 5 C -0.18 -4.38 9.64 22.65 0.22 -4.17 16 6 C -0.05 -1.38 6.96 40.79 0.28 -1.10 16 7 C 0.59 16.30 7.77 86.59 0.67 16.98 16 8 O -0.57 -17.41 14.41 -4.11 -0.06 -17.47 16 9 N -0.69 -17.53 4.36 -442.60 -1.93 -19.46 16 10 C 0.16 4.01 3.06 45.72 0.14 4.15 16 11 H 0.08 2.26 7.68 -2.39 -0.02 2.24 16 12 C -0.12 -2.63 6.59 31.32 0.21 -2.42 16 13 C -0.11 -2.38 6.83 31.67 0.22 -2.16 16 14 C -0.11 -3.00 6.19 31.89 0.20 -2.80 16 15 C -0.10 -2.94 2.85 -9.71 -0.03 -2.96 16 16 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 17 C 0.17 6.10 4.72 86.38 0.41 6.50 16 18 N -0.74 -35.82 5.49 -343.46 -1.89 -37.70 16 19 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 22 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 23 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 N -0.26 -6.70 3.75 -356.02 -1.33 -8.03 16 28 C 0.08 1.54 10.89 127.77 1.39 2.93 16 29 N -0.29 -7.62 11.90 -47.50 -0.57 -8.18 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.08 7.37 -2.39 -0.02 1.07 16 37 H 0.17 3.64 7.09 -2.91 -0.02 3.62 16 38 H 0.41 9.83 5.58 -92.71 -0.52 9.31 16 39 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.79 7.97 -2.39 -0.02 1.77 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.03 1.00 6.40 -2.39 -0.02 0.98 16 47 H 0.38 19.39 7.64 -92.71 -0.71 18.68 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.11 2.12 6.20 -2.38 -0.01 2.11 16 Total: -1.00 -67.27 406.25 2.77 -64.50 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.29 Total: 40.43 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 6.53 Total: -3.50 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.43 Total: -131.08 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.27 2.77 -64.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.169 kcal (2) G-P(sol) polarization free energy of solvation -67.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds