Wall clock time and date at job start Tue Mar 31 2020 19:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.50696 * 109.47364 * 240.00128 * 2 1 3 5 5 C 1.39678 * 126.06958 * 84.99503 * 4 2 1 6 6 C 1.38406 * 105.36209 * 179.97438 * 5 4 2 7 7 C 1.47164 * 126.88604 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99808 * 174.27910 * 7 6 5 9 9 N 1.34774 * 119.99710 * 354.27783 * 7 6 5 10 10 C 1.46504 * 119.99820 * 185.12142 * 9 7 6 11 11 H 1.08999 * 110.43306 * 36.09424 * 10 9 7 12 12 C 1.54259 * 110.49090 * 273.54919 * 10 9 7 13 13 C 1.53871 * 106.60195 * 217.71136 * 12 10 9 14 14 C 1.54269 * 106.59579 * 359.97438 * 13 12 10 15 15 C 1.54885 * 110.48455 * 158.77188 * 10 9 7 16 16 H 1.09001 * 110.75855 * 38.31086 * 15 10 9 17 17 C 1.53000 * 110.75974 * 274.94037 * 15 10 9 18 18 N 1.46503 * 109.47260 * 175.00201 * 17 15 10 19 19 C 1.36937 * 119.99738 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99810 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99947 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46899 * 90.00236 * 23 21 19 25 25 H 1.48504 * 109.46959 * 209.99601 * 23 21 19 26 26 H 1.48491 * 109.47393 * 330.00185 * 23 21 19 27 27 N 1.36604 * 106.22907 * 0.02562 * 6 5 4 28 28 C 1.46501 * 125.18672 * 179.97438 * 27 6 5 29 29 N 1.28445 * 109.61772 * 359.74991 * 27 6 5 30 30 H 1.08993 * 109.47099 * 60.00058 * 1 2 3 31 31 H 1.08999 * 109.47048 * 299.99745 * 1 2 3 32 32 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47794 * 120.00120 * 2 1 3 34 34 H 1.08999 * 109.47031 * 60.00244 * 3 2 1 35 35 H 1.09005 * 109.47193 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47167 * 299.99901 * 3 2 1 37 37 H 1.08004 * 127.31751 * 359.96057 * 5 4 2 38 38 H 0.97003 * 120.00443 * 5.12768 * 9 7 6 39 39 H 1.08998 * 110.03487 * 336.99721 * 12 10 9 40 40 H 1.09004 * 110.02793 * 98.37568 * 12 10 9 41 41 H 1.08997 * 110.03269 * 119.28175 * 13 12 10 42 42 H 1.09004 * 110.03526 * 240.71640 * 13 12 10 43 43 H 1.09004 * 110.48683 * 142.28730 * 14 13 12 44 44 H 1.08999 * 110.48939 * 264.93328 * 14 13 12 45 45 H 1.08998 * 109.47203 * 295.00091 * 17 15 10 46 46 H 1.09000 * 109.47083 * 55.00374 * 17 15 10 47 47 H 0.96998 * 120.00214 * 359.97438 * 18 17 15 48 48 H 0.96993 * 120.00114 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.47168 * 93.84905 * 28 27 6 50 50 H 1.09006 * 109.46781 * 213.84745 * 28 27 6 51 51 H 1.08997 * 109.47102 * 333.84435 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2136 -0.1404 -2.4927 6 6 2.6860 -1.1656 -3.2935 7 6 3.0361 -1.0821 -4.7205 8 8 3.5395 -2.0375 -5.2800 9 7 2.7988 0.0530 -5.4072 10 6 3.0423 0.1001 -6.8511 11 1 2.7872 -0.8545 -7.3113 12 6 4.5139 0.4621 -7.1390 13 6 4.5075 1.3785 -8.3751 14 6 3.0321 1.5407 -8.7956 15 6 2.2340 1.2510 -7.4999 16 1 2.2195 2.1266 -6.8508 17 6 0.8113 0.7955 -7.8302 18 7 0.0375 1.9345 -8.3304 19 6 -1.2725 1.7664 -8.6921 20 1 -1.7352 0.7941 -8.6089 21 6 -2.0058 2.8457 -9.1656 22 7 -1.4421 4.0308 -9.2665 23 14 -3.7926 2.6162 -9.6597 24 1 -4.6662 2.8571 -8.4832 25 1 -4.1360 3.5792 -10.7367 26 1 -3.9960 1.2300 -10.1517 27 7 2.7622 -2.2705 -2.4939 28 6 3.2150 -3.5953 -2.9254 29 7 2.3808 -1.9695 -1.3049 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.0250 0.8829 -2.7822 38 1 2.4668 0.8389 -4.9455 39 1 4.9426 0.9885 -6.2862 40 1 5.0871 -0.4416 -7.3461 41 1 4.9330 2.3496 -8.1222 42 1 5.0774 0.9196 -9.1831 43 1 2.8433 2.5575 -9.1402 44 1 2.7752 0.8199 -9.5718 45 1 0.8467 0.0174 -8.5926 46 1 0.3379 0.4017 -6.9308 47 1 0.4529 2.8079 -8.4048 48 1 -1.9543 4.7849 -9.5977 49 1 4.2799 -3.7006 -2.7183 50 1 2.6619 -4.3626 -2.3835 51 1 3.0399 -3.7085 -3.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272323023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:58 Heat of formation + Delta-G solvation = 28.370817 kcal Electronic energy + Delta-G solvation = -29188.464296 eV Core-core repulsion = 25316.792569 eV Total energy + Delta-G solvation = -3871.671726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.72325 -39.86323 -37.94538 -36.13781 -34.52472 -33.86946 -32.44070 -31.42469 -31.09575 -28.62096 -27.64427 -27.29422 -26.90682 -24.62911 -23.57236 -22.67802 -22.06406 -20.80296 -20.40557 -19.78197 -19.17284 -17.86806 -17.02279 -16.62380 -16.41628 -16.05281 -15.17371 -14.99643 -14.58963 -14.44029 -14.38814 -14.22165 -13.83800 -13.70303 -13.50159 -13.32939 -13.21686 -12.90157 -12.76489 -12.64532 -12.28247 -12.19158 -12.02568 -11.61846 -11.38526 -11.33527 -11.31001 -10.99096 -10.91725 -10.77955 -10.67699 -10.50270 -10.36146 -10.27463 -10.12235 -10.00276 -9.71399 -9.33798 -9.03546 -8.98312 -8.87839 -6.92697 -5.77558 -3.05840 1.13389 2.21472 2.39768 3.07614 3.15172 3.43128 3.48685 3.50068 4.16516 4.38734 4.54082 4.65102 4.75646 4.79751 4.81851 4.95285 4.99022 5.00292 5.12309 5.18998 5.32519 5.37826 5.41785 5.46800 5.48527 5.53252 5.58338 5.61974 5.67949 5.71090 5.73363 5.78796 5.83565 5.90760 6.05525 6.06855 6.12294 6.14578 6.18697 6.27183 6.32715 6.44347 6.53050 6.54429 6.57648 6.75001 6.86664 7.36415 7.69797 7.90861 8.04347 8.41529 9.53015 10.10317 10.45417 11.45312 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.003105 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.541208 B = 9015.819111 C =10812.419194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 C -0.145 4.145 4 C 0.033 3.967 5 C -0.180 4.180 6 C -0.035 4.035 7 C 0.592 3.408 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.150 3.850 11 H 0.096 0.904 12 C -0.132 4.132 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.082 0.918 17 C 0.161 3.839 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 N -0.259 5.259 28 C 0.086 3.914 29 N -0.278 5.278 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.160 0.840 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.836 -8.424 15.881 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.124 4.124 5 C -0.209 4.209 6 C -0.163 4.163 7 C 0.378 3.622 8 O -0.422 6.422 9 N -0.350 5.350 10 C 0.045 3.955 11 H 0.114 0.886 12 C -0.170 4.170 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.121 4.121 16 H 0.100 0.900 17 C 0.033 3.967 18 N -0.374 5.374 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 N -0.046 5.046 28 C -0.054 4.054 29 N -0.111 5.111 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.178 0.822 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.175 -10.345 15.975 23.147 hybrid contribution -1.091 1.222 -0.573 1.735 sum 12.085 -9.122 15.402 21.598 Atomic orbital electron populations 1.21826 0.93799 1.02184 1.02324 1.19418 0.95746 0.94944 0.92776 1.21840 1.01223 0.94699 1.02476 1.21929 1.03950 0.90119 0.96384 1.22089 1.06169 0.99698 0.92995 1.21416 1.11574 0.89226 0.94105 1.16895 0.78163 0.83375 0.83799 1.90762 1.44125 1.37025 1.70314 1.45764 1.66394 1.13485 1.09376 1.21987 0.94735 1.00551 0.78226 0.88646 1.22508 0.96267 0.99851 0.98418 1.22128 0.97674 0.99261 0.97050 1.22298 0.92839 1.02893 0.96835 1.22576 0.95706 0.96821 0.97017 0.89952 1.20649 0.88297 0.91481 0.96236 1.42313 1.09968 1.07199 1.77952 1.19224 0.87490 0.94934 1.35347 0.91301 1.24715 0.98292 0.95590 1.02288 1.69651 1.36063 0.99717 1.52800 0.86210 0.85169 0.77065 0.77888 1.21731 1.21764 1.20788 1.45511 1.44663 1.09545 1.04836 1.22345 1.01056 0.78650 1.03368 1.73103 1.17271 1.17885 1.02862 0.92044 0.91998 0.92589 0.89982 0.91907 0.92472 0.91928 0.82232 0.75973 0.91668 0.91447 0.91861 0.91918 0.90651 0.91132 0.96185 0.96435 0.78250 0.93540 0.89881 0.89103 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.17 37.15 0.34 -0.88 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.07 8.79 37.16 0.33 -0.75 16 4 C 0.03 0.38 6.13 -82.47 -0.51 -0.13 16 5 C -0.18 -2.06 9.65 -38.98 -0.38 -2.43 16 6 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 7 C 0.59 8.03 7.78 -12.64 -0.10 7.93 16 8 O -0.54 -8.44 14.45 5.26 0.08 -8.36 16 9 N -0.70 -8.61 5.10 -53.36 -0.27 -8.88 16 10 C 0.15 1.98 2.56 -66.28 -0.17 1.81 16 11 H 0.10 1.41 7.65 -51.93 -0.40 1.01 16 12 C -0.13 -1.55 6.53 -25.62 -0.17 -1.72 16 13 C -0.12 -1.42 6.80 -25.61 -0.17 -1.60 16 14 C -0.11 -1.58 6.20 -25.06 -0.16 -1.73 16 15 C -0.10 -1.52 2.50 -88.62 -0.22 -1.74 16 16 H 0.08 1.22 8.02 -51.93 -0.42 0.81 16 17 C 0.16 3.14 5.70 -4.04 -0.02 3.11 16 18 N -0.73 -17.93 5.52 -59.91 -0.33 -18.27 16 19 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 N -0.26 -3.25 3.75 -63.88 -0.24 -3.49 16 28 C 0.09 0.83 10.88 59.85 0.65 1.48 16 29 N -0.28 -3.59 11.90 33.64 0.40 -3.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 37 H 0.16 1.46 7.05 -52.48 -0.37 1.09 16 38 H 0.40 4.33 7.57 -40.82 -0.31 4.02 16 39 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.06 7.94 -51.93 -0.41 0.64 16 45 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 9.82 7.67 -40.82 -0.31 9.50 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.11 1.17 6.22 -51.93 -0.32 0.85 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -32.64 410.67 -8.97 -41.62 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -8.80 Total: 9.46 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.70 Total: -5.30 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.28 Total: -60.89 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.64 -8.97 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.988 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds