Wall clock time and date at job start Tue Mar 31 2020 19:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.50696 * 109.47364 * 240.00128 * 2 1 3 5 5 C 1.39678 * 126.06958 * 84.99503 * 4 2 1 6 6 C 1.38406 * 105.36209 * 179.97438 * 5 4 2 7 7 C 1.47164 * 126.88604 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99808 * 174.27910 * 7 6 5 9 9 N 1.34774 * 119.99710 * 354.27783 * 7 6 5 10 10 C 1.46504 * 119.99820 * 185.12142 * 9 7 6 11 11 H 1.08999 * 110.43306 * 36.09424 * 10 9 7 12 12 C 1.54259 * 110.49090 * 273.54919 * 10 9 7 13 13 C 1.53871 * 106.60195 * 217.71136 * 12 10 9 14 14 C 1.54269 * 106.59579 * 359.97438 * 13 12 10 15 15 C 1.54885 * 110.48455 * 158.77188 * 10 9 7 16 16 H 1.09001 * 110.75855 * 38.31086 * 15 10 9 17 17 C 1.53000 * 110.75974 * 274.94037 * 15 10 9 18 18 N 1.46503 * 109.47260 * 175.00201 * 17 15 10 19 19 C 1.36937 * 119.99738 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99810 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99947 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46899 * 90.00236 * 23 21 19 25 25 H 1.48504 * 109.46959 * 209.99601 * 23 21 19 26 26 H 1.48491 * 109.47393 * 330.00185 * 23 21 19 27 27 N 1.36604 * 106.22907 * 0.02562 * 6 5 4 28 28 C 1.46501 * 125.18672 * 179.97438 * 27 6 5 29 29 N 1.28445 * 109.61772 * 359.74991 * 27 6 5 30 30 H 1.08993 * 109.47099 * 60.00058 * 1 2 3 31 31 H 1.08999 * 109.47048 * 299.99745 * 1 2 3 32 32 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47794 * 120.00120 * 2 1 3 34 34 H 1.08999 * 109.47031 * 60.00244 * 3 2 1 35 35 H 1.09005 * 109.47193 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47167 * 299.99901 * 3 2 1 37 37 H 1.08004 * 127.31751 * 359.96057 * 5 4 2 38 38 H 0.97003 * 120.00443 * 5.12768 * 9 7 6 39 39 H 1.08998 * 110.03487 * 336.99721 * 12 10 9 40 40 H 1.09004 * 110.02793 * 98.37568 * 12 10 9 41 41 H 1.08997 * 110.03269 * 119.28175 * 13 12 10 42 42 H 1.09004 * 110.03526 * 240.71640 * 13 12 10 43 43 H 1.09004 * 110.48683 * 142.28730 * 14 13 12 44 44 H 1.08999 * 110.48939 * 264.93328 * 14 13 12 45 45 H 1.08998 * 109.47203 * 295.00091 * 17 15 10 46 46 H 1.09000 * 109.47083 * 55.00374 * 17 15 10 47 47 H 0.96998 * 120.00214 * 359.97438 * 18 17 15 48 48 H 0.96993 * 120.00114 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.47168 * 93.84905 * 28 27 6 50 50 H 1.09006 * 109.46781 * 213.84745 * 28 27 6 51 51 H 1.08997 * 109.47102 * 333.84435 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2136 -0.1404 -2.4927 6 6 2.6860 -1.1656 -3.2935 7 6 3.0361 -1.0821 -4.7205 8 8 3.5395 -2.0375 -5.2800 9 7 2.7988 0.0530 -5.4072 10 6 3.0423 0.1001 -6.8511 11 1 2.7872 -0.8545 -7.3113 12 6 4.5139 0.4621 -7.1390 13 6 4.5075 1.3785 -8.3751 14 6 3.0321 1.5407 -8.7956 15 6 2.2340 1.2510 -7.4999 16 1 2.2195 2.1266 -6.8508 17 6 0.8113 0.7955 -7.8302 18 7 0.0375 1.9345 -8.3304 19 6 -1.2725 1.7664 -8.6921 20 1 -1.7352 0.7941 -8.6089 21 6 -2.0058 2.8457 -9.1656 22 7 -1.4421 4.0308 -9.2665 23 14 -3.7926 2.6162 -9.6597 24 1 -4.6662 2.8571 -8.4832 25 1 -4.1360 3.5792 -10.7367 26 1 -3.9960 1.2300 -10.1517 27 7 2.7622 -2.2705 -2.4939 28 6 3.2150 -3.5953 -2.9254 29 7 2.3808 -1.9695 -1.3049 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 2.0250 0.8829 -2.7822 38 1 2.4668 0.8389 -4.9455 39 1 4.9426 0.9885 -6.2862 40 1 5.0871 -0.4416 -7.3461 41 1 4.9330 2.3496 -8.1222 42 1 5.0774 0.9196 -9.1831 43 1 2.8433 2.5575 -9.1402 44 1 2.7752 0.8199 -9.5718 45 1 0.8467 0.0174 -8.5926 46 1 0.3379 0.4017 -6.9308 47 1 0.4529 2.8079 -8.4048 48 1 -1.9543 4.7849 -9.5977 49 1 4.2799 -3.7006 -2.7183 50 1 2.6619 -4.3626 -2.3835 51 1 3.0399 -3.7085 -3.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272323023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:56 Heat of formation + Delta-G solvation = 8.218325 kcal Electronic energy + Delta-G solvation = -29189.338174 eV Core-core repulsion = 25316.792569 eV Total energy + Delta-G solvation = -3872.545604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.63018 -40.96020 -39.11809 -36.88555 -36.29845 -34.99901 -33.30522 -33.25149 -32.05132 -30.19701 -28.66867 -27.98453 -27.67904 -26.35928 -24.66488 -23.90201 -23.33595 -21.77438 -21.53437 -20.81136 -20.19021 -19.22964 -18.60775 -17.71001 -17.34109 -17.03192 -16.64105 -16.13513 -16.01572 -15.58086 -15.17641 -15.15809 -15.05246 -15.00662 -14.78186 -14.63044 -14.36427 -14.14902 -13.59442 -13.46307 -13.42699 -13.12453 -13.10140 -12.88415 -12.80237 -12.39584 -12.31092 -12.15402 -12.14050 -12.04422 -12.00780 -11.88184 -11.60911 -11.59554 -11.47290 -11.28450 -11.20086 -10.91817 -10.35993 -10.01532 -9.88119 -8.98074 -7.94449 -5.22382 0.16387 1.33321 1.48038 1.48700 1.50860 1.57241 2.07412 2.16153 2.56177 3.34070 3.38655 3.41171 3.54332 3.66452 3.89182 3.90583 4.13025 4.17908 4.25381 4.29141 4.32380 4.42698 4.44541 4.47249 4.51297 4.55361 4.57205 4.61052 4.67353 4.70969 4.73715 4.88629 4.96785 5.03993 5.05301 5.08044 5.12053 5.19600 5.20427 5.25596 5.32033 5.42171 5.45581 5.48031 5.50096 5.52987 5.56516 5.70932 6.28074 6.35636 6.96263 7.05276 7.35438 8.10386 8.35576 9.28676 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.003105 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.541208 B = 9015.819111 C =10812.419194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.141 4.141 4 C 0.026 3.974 5 C -0.177 4.177 6 C -0.053 4.053 7 C 0.594 3.406 8 O -0.567 6.567 9 N -0.693 5.693 10 C 0.157 3.843 11 H 0.080 0.920 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.091 4.091 16 H 0.088 0.912 17 C 0.162 3.838 18 N -0.738 5.738 19 C -0.247 4.247 20 H 0.069 0.931 21 C -0.069 4.069 22 N -0.965 5.965 23 Si 0.968 3.032 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.273 1.273 27 N -0.267 5.267 28 C 0.082 3.918 29 N -0.295 5.295 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.180 0.820 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.013 0.987 46 H 0.014 0.986 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.279 -8.275 16.899 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.206 4.206 6 C -0.182 4.182 7 C 0.380 3.620 8 O -0.447 6.447 9 N -0.344 5.344 10 C 0.053 3.947 11 H 0.098 0.902 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.110 4.110 16 H 0.106 0.894 17 C 0.036 3.964 18 N -0.381 5.381 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.797 3.203 24 H -0.213 1.213 25 H -0.220 1.220 26 H -0.199 1.199 27 N -0.054 5.054 28 C -0.057 4.057 29 N -0.128 5.128 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.197 0.803 38 H 0.251 0.749 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.209 0.791 48 H 0.061 0.939 49 H 0.113 0.887 50 H 0.126 0.874 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.628 -10.221 17.010 24.074 hybrid contribution -1.232 1.113 -0.856 1.868 sum 12.396 -9.108 16.154 22.306 Atomic orbital electron populations 1.21806 0.93498 1.01603 1.02928 1.19531 0.95901 0.95667 0.91727 1.21827 1.01118 0.93637 1.03317 1.22429 1.03396 0.89869 0.97362 1.22391 1.05164 1.00334 0.92699 1.21456 1.12761 0.90057 0.93905 1.16992 0.77772 0.83153 0.84113 1.90748 1.45295 1.37807 1.70868 1.45672 1.66101 1.13624 1.08955 1.21805 0.95521 0.98912 0.78509 0.90208 1.22440 0.94779 1.00053 0.98905 1.22064 0.95579 1.00102 0.97274 1.22253 0.94869 1.01687 0.96074 1.22410 0.93172 0.97574 0.97853 0.89369 1.20740 0.90435 0.89885 0.95361 1.42457 1.09515 1.08179 1.77990 1.19570 0.88898 0.94885 1.34539 0.91304 1.25467 1.02189 0.95457 1.03048 1.69788 1.37392 1.00297 1.54052 0.85223 0.80550 0.77155 0.77338 1.21340 1.22008 1.19860 1.45785 1.44673 1.10206 1.04741 1.22476 1.02099 0.78197 1.02919 1.73094 1.17871 1.18725 1.03155 0.92701 0.90112 0.93753 0.89702 0.90341 0.92616 0.91842 0.80273 0.74930 0.90536 0.91333 0.90473 0.90637 0.91996 0.92217 0.96884 0.96817 0.79057 0.93932 0.88669 0.87418 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.17 71.98 0.66 -1.54 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.81 8.79 71.98 0.63 -1.17 16 4 C 0.03 0.56 6.13 43.05 0.26 0.83 16 5 C -0.18 -3.83 9.65 22.66 0.22 -3.61 16 6 C -0.05 -1.34 6.96 40.79 0.28 -1.05 16 7 C 0.59 15.73 7.78 86.59 0.67 16.40 16 8 O -0.57 -17.46 14.45 -4.11 -0.06 -17.52 16 9 N -0.69 -16.30 5.10 -440.98 -2.25 -18.55 16 10 C 0.16 4.00 2.56 46.06 0.12 4.12 16 11 H 0.08 2.33 7.65 -2.39 -0.02 2.31 16 12 C -0.12 -2.65 6.53 31.31 0.20 -2.44 16 13 C -0.11 -2.36 6.80 31.32 0.21 -2.14 16 14 C -0.11 -3.08 6.20 31.68 0.20 -2.88 16 15 C -0.09 -2.65 2.50 -9.50 -0.02 -2.68 16 16 H 0.09 2.51 8.02 -2.39 -0.02 2.49 16 17 C 0.16 6.34 5.70 86.38 0.49 6.83 16 18 N -0.74 -36.53 5.52 -343.44 -1.90 -38.43 16 19 C -0.25 -13.73 9.99 84.03 0.84 -12.90 16 20 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 22 N -0.96 -57.80 13.06 21.65 0.28 -57.52 16 23 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 27 N -0.27 -6.58 3.75 -356.02 -1.33 -7.91 16 28 C 0.08 1.55 10.88 127.77 1.39 2.94 16 29 N -0.30 -7.42 11.90 -47.50 -0.57 -7.99 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 37 H 0.18 2.96 7.05 -2.91 -0.02 2.94 16 38 H 0.41 8.24 7.57 -92.71 -0.70 7.54 16 39 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.06 1.78 7.94 -2.39 -0.02 1.76 16 45 H 0.01 0.54 7.99 -2.39 -0.02 0.52 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.38 19.50 7.67 -92.71 -0.71 18.79 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.11 1.59 8.14 -2.38 -0.02 1.58 16 51 H 0.10 2.15 6.22 -2.39 -0.01 2.13 16 Total: -1.00 -69.26 410.67 2.31 -66.95 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.49 Total: 36.02 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 6.59 Total: -2.91 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.76 Total: -130.40 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.06 Total: -17.52 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -69.26 2.31 -66.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.166 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds