Wall clock time and date at job start Tue Mar 31 2020 19:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46831 * 2 1 4 4 C 1.50698 * 109.46836 * 119.99202 * 2 1 3 5 5 C 1.39669 * 126.07334 * 275.26686 * 4 2 1 6 6 C 1.38407 * 105.36183 * 180.14928 * 5 4 2 7 7 C 1.47164 * 126.88666 * 179.91881 * 6 5 4 8 8 O 1.21629 * 120.00031 * 183.03869 * 7 6 5 9 9 N 1.34777 * 119.99590 * 3.03368 * 7 6 5 10 10 C 1.46501 * 119.99255 * 174.86835 * 9 7 6 11 11 H 1.08999 * 110.06105 * 326.41421 * 10 9 7 12 12 C 1.54264 * 110.03508 * 87.84038 * 10 9 7 13 13 C 1.54881 * 104.20028 * 142.89083 * 12 10 9 14 14 C 1.54967 * 102.77923 * 322.08313 * 13 12 10 15 15 C 1.53881 * 110.02880 * 205.00065 * 10 9 7 16 16 H 1.09003 * 110.02921 * 121.38704 * 15 10 9 17 17 C 1.52995 * 110.03229 * 0.02562 * 15 10 9 18 18 N 1.46503 * 109.47392 * 175.68744 * 17 15 10 19 19 C 1.36929 * 120.00450 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00181 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99787 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47014 * 269.99571 * 23 21 19 25 25 H 1.48494 * 109.47181 * 29.99873 * 23 21 19 26 26 H 1.48512 * 109.46748 * 149.99776 * 23 21 19 27 27 N 1.36602 * 106.23132 * 359.65584 * 6 5 4 28 28 C 1.46498 * 125.19353 * 180.20232 * 27 6 5 29 29 N 1.28445 * 109.61811 * 0.22327 * 27 6 5 30 30 H 1.09000 * 109.47267 * 300.00554 * 1 2 3 31 31 H 1.09003 * 109.47138 * 60.00277 * 1 2 3 32 32 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46998 * 239.99797 * 2 1 3 34 34 H 1.09009 * 109.46913 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46876 * 299.99356 * 3 2 1 36 36 H 1.09000 * 109.47648 * 59.99679 * 3 2 1 37 37 H 1.07995 * 127.32247 * 0.07078 * 5 4 2 38 38 H 0.96994 * 120.00428 * 354.87609 * 9 7 6 39 39 H 1.09001 * 110.48595 * 261.57278 * 12 10 9 40 40 H 1.09004 * 110.48292 * 24.07418 * 12 10 9 41 41 H 1.08996 * 110.75875 * 80.37253 * 13 12 10 42 42 H 1.09006 * 110.75897 * 203.74414 * 13 12 10 43 43 H 1.09003 * 110.47835 * 279.23911 * 14 13 12 44 44 H 1.08991 * 110.53337 * 156.56736 * 14 13 12 45 45 H 1.09001 * 109.47443 * 55.68842 * 17 15 10 46 46 H 1.09001 * 109.46813 * 295.68611 * 17 15 10 47 47 H 0.96999 * 119.99271 * 0.02562 * 18 17 15 48 48 H 0.97008 * 119.99895 * 0.02562 * 22 21 19 49 49 H 1.09009 * 109.46581 * 85.08856 * 28 27 6 50 50 H 1.08991 * 109.47509 * 205.08718 * 28 27 6 51 51 H 1.08998 * 109.47137 * 325.09290 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.2087 -0.1415 2.4940 6 6 2.6858 -1.1655 3.2937 7 6 3.0345 -1.0823 4.7209 8 8 3.4973 -2.0517 5.2914 9 7 2.8412 0.0682 5.3959 10 6 3.0818 0.1194 6.8401 11 1 2.8265 -0.8373 7.2958 12 6 4.5608 0.4591 7.1177 13 6 4.5124 1.3739 8.3666 14 6 3.2451 2.2296 8.1158 15 6 2.2458 1.2450 7.4741 16 1 1.5843 0.8344 8.2369 17 6 1.4247 1.9578 6.3979 18 7 0.5575 2.9571 7.0270 19 6 -0.2742 3.7245 6.2562 20 1 -0.2913 3.5928 5.1843 21 6 -1.0955 4.6717 6.8523 22 7 -1.0750 4.8317 8.1585 23 14 -2.2307 5.7180 5.8007 24 1 -1.5217 6.9556 5.3875 25 1 -2.6335 4.9520 4.5940 26 1 -3.4394 6.0783 6.5848 27 7 2.7624 -2.2703 2.4940 28 6 3.2161 -3.5949 2.9253 29 7 2.3765 -1.9706 1.3062 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.0153 0.8804 2.7848 38 1 2.5427 0.8622 4.9255 39 1 5.1270 -0.4477 7.3307 40 1 4.9959 0.9892 6.2705 41 1 4.4043 0.7817 9.2753 42 1 5.4003 2.0042 8.4184 43 1 3.4670 3.0482 7.4311 44 1 2.8511 2.6141 9.0565 45 1 0.8129 1.2294 5.8656 46 1 2.0966 2.4507 5.6952 47 1 0.5732 3.0755 7.9896 48 1 -0.4857 4.2881 8.7046 49 1 2.3803 -4.1402 3.3638 50 1 3.5984 -4.1456 2.0659 51 1 4.0070 -3.4843 3.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272323024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:05 Heat of formation + Delta-G solvation = 37.512378 kcal Electronic energy + Delta-G solvation = -29757.485105 eV Core-core repulsion = 25886.209786 eV Total energy + Delta-G solvation = -3871.275319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.68099 -40.03584 -38.03681 -36.06763 -34.70900 -33.92697 -32.40873 -31.49612 -31.05728 -28.43724 -27.64728 -27.22254 -26.86558 -24.37299 -23.58865 -22.71751 -22.58633 -20.79146 -20.50375 -19.50607 -19.02843 -18.02362 -17.20274 -16.51593 -16.40780 -15.86418 -15.35689 -15.02891 -14.75558 -14.45452 -14.32152 -14.16771 -13.91638 -13.79613 -13.64245 -13.43596 -13.38578 -13.04216 -12.70007 -12.63803 -12.31425 -12.18640 -11.80774 -11.54284 -11.35048 -11.30297 -11.26292 -10.94364 -10.80044 -10.64576 -10.62118 -10.58950 -10.48571 -10.34108 -10.11049 -10.03053 -9.32096 -9.20265 -9.01947 -8.96739 -8.88698 -7.05167 -6.13799 -3.14065 1.16598 2.25081 2.44589 3.11251 3.18042 3.49630 3.54304 3.68219 4.21635 4.40443 4.57465 4.68146 4.70301 4.75598 4.86026 4.98539 5.00401 5.05760 5.16832 5.25636 5.33045 5.34442 5.43268 5.48248 5.49905 5.56015 5.57027 5.58931 5.63833 5.73749 5.77536 5.80075 5.80916 5.91541 5.94410 6.00410 6.04635 6.15098 6.16808 6.21414 6.31457 6.37742 6.44440 6.47702 6.57736 6.61927 6.67286 7.38914 7.76252 7.94261 8.06911 8.72526 9.18667 10.05123 10.19842 11.34785 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.004076 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.866539 B = 6867.568427 C = 9740.682684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 C -0.146 4.146 4 C 0.034 3.966 5 C -0.178 4.178 6 C -0.037 4.037 7 C 0.591 3.409 8 O -0.548 6.548 9 N -0.703 5.703 10 C 0.152 3.848 11 H 0.091 0.909 12 C -0.131 4.131 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.110 4.110 16 H 0.082 0.918 17 C 0.162 3.838 18 N -0.739 5.739 19 C -0.333 4.333 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.943 5.943 23 Si 1.081 2.919 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.288 1.288 27 N -0.260 5.260 28 C 0.089 3.911 29 N -0.278 5.278 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.161 0.839 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.023 0.977 46 H 0.018 0.982 47 H 0.368 0.632 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -12.495 -11.072 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 C -0.204 4.204 4 C -0.123 4.123 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.377 3.623 8 O -0.427 6.427 9 N -0.357 5.357 10 C 0.047 3.953 11 H 0.109 0.891 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.129 4.129 16 H 0.101 0.899 17 C 0.035 3.965 18 N -0.385 5.385 19 C -0.464 4.464 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.589 5.589 23 Si 0.912 3.088 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.214 1.214 27 N -0.047 5.047 28 C -0.051 4.051 29 N -0.111 5.111 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.178 0.822 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.201 0.799 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.367 -13.153 -11.429 20.275 hybrid contribution 0.912 -0.229 0.510 1.069 sum 11.278 -13.381 -10.920 20.628 Atomic orbital electron populations 1.21835 0.93808 1.02088 1.02450 1.19421 0.95751 0.94992 0.92672 1.21850 1.01208 0.94650 1.02646 1.21937 1.03971 0.90002 0.96364 1.22140 1.05754 0.99829 0.92937 1.21380 1.11814 0.89237 0.94109 1.16930 0.77873 0.83574 0.83941 1.90752 1.45526 1.36778 1.69632 1.46105 1.67729 1.12369 1.09460 1.21702 0.94903 0.99861 0.78786 0.89101 1.22763 0.95844 0.99824 0.98563 1.22497 0.98409 0.97861 0.97422 1.22381 0.94006 0.97516 1.01101 1.22258 0.96913 0.94941 0.98822 0.89949 1.20619 0.91654 0.90898 0.93379 1.42319 1.47423 1.42730 1.06006 1.20036 1.18383 1.16324 0.91692 0.91736 1.25753 1.00776 0.99300 0.98251 1.70854 1.41104 1.42828 1.04073 0.83222 0.76189 0.75505 0.73905 1.22271 1.22094 1.21377 1.45491 1.44712 1.09484 1.04979 1.22291 1.02078 0.78820 1.01957 1.73107 1.17257 1.17799 1.02935 0.91973 0.91950 0.92663 0.89997 0.92476 0.91868 0.91778 0.82190 0.75031 0.91286 0.91204 0.91467 0.91475 0.90916 0.91302 0.95971 0.96420 0.79895 0.93357 0.89880 0.88949 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.18 37.16 0.34 -1.06 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.31 8.79 37.16 0.33 -0.98 16 4 C 0.03 0.43 6.12 -82.47 -0.51 -0.08 16 5 C -0.18 -2.29 9.65 -38.98 -0.38 -2.67 16 6 C -0.04 -0.51 6.96 -82.06 -0.57 -1.09 16 7 C 0.59 8.51 7.79 -12.64 -0.10 8.42 16 8 O -0.55 -8.69 14.49 5.25 0.08 -8.61 16 9 N -0.70 -9.55 4.38 -53.87 -0.24 -9.78 16 10 C 0.15 2.06 3.19 -66.81 -0.21 1.85 16 11 H 0.09 1.28 7.64 -51.93 -0.40 0.89 16 12 C -0.13 -1.58 6.53 -25.08 -0.16 -1.74 16 13 C -0.12 -1.43 6.91 -24.70 -0.17 -1.60 16 14 C -0.11 -1.60 6.06 -25.03 -0.15 -1.75 16 15 C -0.11 -1.67 2.97 -89.50 -0.27 -1.94 16 16 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 17 C 0.16 3.04 4.18 -4.04 -0.02 3.02 16 18 N -0.74 -17.81 5.44 -59.91 -0.33 -18.14 16 19 C -0.33 -9.12 9.99 -15.06 -0.15 -9.27 16 20 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 21 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 22 N -0.94 -28.66 13.70 55.49 0.76 -27.90 16 23 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 N -0.26 -3.43 3.75 -63.88 -0.24 -3.67 16 28 C 0.09 0.88 10.71 59.85 0.64 1.52 16 29 N -0.28 -3.79 11.90 33.64 0.40 -3.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 37 H 0.16 1.85 7.04 -52.49 -0.37 1.48 16 38 H 0.41 5.45 4.91 -40.82 -0.20 5.25 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.44 7.46 -51.93 -0.39 0.05 16 46 H 0.02 0.33 7.08 -51.93 -0.37 -0.04 16 47 H 0.37 9.11 6.36 -40.82 -0.26 8.85 16 48 H 0.26 7.61 6.78 -40.82 -0.28 7.33 16 49 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 50 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.11 1.11 6.53 -51.93 -0.34 0.77 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -32.90 403.49 -8.86 -41.75 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.50 Total: 12.35 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.78 Total: -9.09 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.36 Total: -62.87 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.90 -8.86 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.264 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds