Wall clock time and date at job start Tue Mar 31 2020 19:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46831 * 2 1 4 4 C 1.50698 * 109.46836 * 119.99202 * 2 1 3 5 5 C 1.39669 * 126.07334 * 275.26686 * 4 2 1 6 6 C 1.38407 * 105.36183 * 180.14928 * 5 4 2 7 7 C 1.47164 * 126.88666 * 179.91881 * 6 5 4 8 8 O 1.21629 * 120.00031 * 183.03869 * 7 6 5 9 9 N 1.34777 * 119.99590 * 3.03368 * 7 6 5 10 10 C 1.46501 * 119.99255 * 174.86835 * 9 7 6 11 11 H 1.08999 * 110.06105 * 326.41421 * 10 9 7 12 12 C 1.54264 * 110.03508 * 87.84038 * 10 9 7 13 13 C 1.54881 * 104.20028 * 142.89083 * 12 10 9 14 14 C 1.54967 * 102.77923 * 322.08313 * 13 12 10 15 15 C 1.53881 * 110.02880 * 205.00065 * 10 9 7 16 16 H 1.09003 * 110.02921 * 121.38704 * 15 10 9 17 17 C 1.52995 * 110.03229 * 0.02562 * 15 10 9 18 18 N 1.46503 * 109.47392 * 175.68744 * 17 15 10 19 19 C 1.36929 * 120.00450 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00181 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00063 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99787 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47014 * 269.99571 * 23 21 19 25 25 H 1.48494 * 109.47181 * 29.99873 * 23 21 19 26 26 H 1.48512 * 109.46748 * 149.99776 * 23 21 19 27 27 N 1.36602 * 106.23132 * 359.65584 * 6 5 4 28 28 C 1.46498 * 125.19353 * 180.20232 * 27 6 5 29 29 N 1.28445 * 109.61811 * 0.22327 * 27 6 5 30 30 H 1.09000 * 109.47267 * 300.00554 * 1 2 3 31 31 H 1.09003 * 109.47138 * 60.00277 * 1 2 3 32 32 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46998 * 239.99797 * 2 1 3 34 34 H 1.09009 * 109.46913 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46876 * 299.99356 * 3 2 1 36 36 H 1.09000 * 109.47648 * 59.99679 * 3 2 1 37 37 H 1.07995 * 127.32247 * 0.07078 * 5 4 2 38 38 H 0.96994 * 120.00428 * 354.87609 * 9 7 6 39 39 H 1.09001 * 110.48595 * 261.57278 * 12 10 9 40 40 H 1.09004 * 110.48292 * 24.07418 * 12 10 9 41 41 H 1.08996 * 110.75875 * 80.37253 * 13 12 10 42 42 H 1.09006 * 110.75897 * 203.74414 * 13 12 10 43 43 H 1.09003 * 110.47835 * 279.23911 * 14 13 12 44 44 H 1.08991 * 110.53337 * 156.56736 * 14 13 12 45 45 H 1.09001 * 109.47443 * 55.68842 * 17 15 10 46 46 H 1.09001 * 109.46813 * 295.68611 * 17 15 10 47 47 H 0.96999 * 119.99271 * 0.02562 * 18 17 15 48 48 H 0.97008 * 119.99895 * 0.02562 * 22 21 19 49 49 H 1.09009 * 109.46581 * 85.08856 * 28 27 6 50 50 H 1.08991 * 109.47509 * 205.08718 * 28 27 6 51 51 H 1.08998 * 109.47137 * 325.09290 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 2.2087 -0.1415 2.4940 6 6 2.6858 -1.1655 3.2937 7 6 3.0345 -1.0823 4.7209 8 8 3.4973 -2.0517 5.2914 9 7 2.8412 0.0682 5.3959 10 6 3.0818 0.1194 6.8401 11 1 2.8265 -0.8373 7.2958 12 6 4.5608 0.4591 7.1177 13 6 4.5124 1.3739 8.3666 14 6 3.2451 2.2296 8.1158 15 6 2.2458 1.2450 7.4741 16 1 1.5843 0.8344 8.2369 17 6 1.4247 1.9578 6.3979 18 7 0.5575 2.9571 7.0270 19 6 -0.2742 3.7245 6.2562 20 1 -0.2913 3.5928 5.1843 21 6 -1.0955 4.6717 6.8523 22 7 -1.0750 4.8317 8.1585 23 14 -2.2307 5.7180 5.8007 24 1 -1.5217 6.9556 5.3875 25 1 -2.6335 4.9520 4.5940 26 1 -3.4394 6.0783 6.5848 27 7 2.7624 -2.2703 2.4940 28 6 3.2161 -3.5949 2.9253 29 7 2.3765 -1.9706 1.3062 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.0153 0.8804 2.7848 38 1 2.5427 0.8622 4.9255 39 1 5.1270 -0.4477 7.3307 40 1 4.9959 0.9892 6.2705 41 1 4.4043 0.7817 9.2753 42 1 5.4003 2.0042 8.4184 43 1 3.4670 3.0482 7.4311 44 1 2.8511 2.6141 9.0565 45 1 0.8129 1.2294 5.8656 46 1 2.0966 2.4507 5.6952 47 1 0.5732 3.0755 7.9896 48 1 -0.4857 4.2881 8.7046 49 1 2.3803 -4.1402 3.3638 50 1 3.5984 -4.1456 2.0659 51 1 4.0070 -3.4843 3.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272323024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:04 Heat of formation + Delta-G solvation = 17.766019 kcal Electronic energy + Delta-G solvation = -29758.341371 eV Core-core repulsion = 25886.209786 eV Total energy + Delta-G solvation = -3872.131585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.67117 -41.19663 -39.24351 -36.91213 -36.54922 -35.03414 -33.33312 -33.25888 -32.09573 -30.00884 -28.71698 -28.00793 -27.70580 -26.12175 -24.63257 -24.48908 -23.51524 -21.80075 -21.54749 -20.63299 -20.22732 -19.41827 -18.80359 -17.65710 -17.40071 -17.03997 -16.52551 -16.28421 -15.93974 -15.88201 -15.62445 -15.21034 -15.13511 -15.04731 -14.88878 -14.73318 -14.45108 -14.23031 -13.59300 -13.52331 -13.42530 -13.01604 -12.91509 -12.82603 -12.61539 -12.34155 -12.31562 -12.19060 -12.03640 -11.99084 -11.88299 -11.81672 -11.77492 -11.56797 -11.51233 -11.25831 -11.18063 -10.91454 -10.40256 -10.06701 -9.91383 -9.09264 -8.36683 -5.30999 0.10801 1.30102 1.46197 1.60791 1.71033 1.84683 2.02897 2.11553 2.72811 3.26862 3.35124 3.42826 3.49321 3.60011 3.76346 3.86750 4.02144 4.11085 4.22679 4.25815 4.29456 4.30019 4.39123 4.40463 4.42048 4.44934 4.52982 4.55641 4.58983 4.68076 4.69303 4.83093 4.85605 4.91304 5.01191 5.01911 5.04856 5.15117 5.16504 5.17747 5.26551 5.38216 5.40044 5.42066 5.42407 5.49589 5.61820 5.67976 6.26479 6.52725 6.88742 7.00219 7.11515 8.01850 8.12791 9.15537 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.004076 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.866539 B = 6867.568427 C = 9740.682684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.143 4.143 4 C 0.028 3.972 5 C -0.181 4.181 6 C -0.054 4.054 7 C 0.593 3.407 8 O -0.564 6.564 9 N -0.700 5.700 10 C 0.157 3.843 11 H 0.088 0.912 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.074 0.926 17 C 0.165 3.835 18 N -0.752 5.752 19 C -0.332 4.332 20 H 0.069 0.931 21 C -0.102 4.102 22 N -0.977 5.977 23 Si 1.126 2.874 24 H -0.284 1.284 25 H -0.272 1.272 26 H -0.296 1.296 27 N -0.264 5.264 28 C 0.084 3.916 29 N -0.290 5.290 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.169 0.831 38 H 0.411 0.589 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.245 0.755 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -12.744 -12.521 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.128 4.128 5 C -0.210 4.210 6 C -0.182 4.182 7 C 0.379 3.621 8 O -0.444 6.444 9 N -0.353 5.353 10 C 0.053 3.947 11 H 0.106 0.894 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.121 4.121 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.396 5.396 19 C -0.463 4.463 20 H 0.087 0.913 21 C -0.293 4.293 22 N -0.625 5.625 23 Si 0.951 3.049 24 H -0.210 1.210 25 H -0.197 1.197 26 H -0.223 1.223 27 N -0.051 5.051 28 C -0.055 4.055 29 N -0.124 5.124 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.186 0.814 38 H 0.251 0.749 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.055 0.945 49 H 0.108 0.892 50 H 0.132 0.868 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.171 -13.438 -12.904 21.723 hybrid contribution 0.699 -0.228 0.925 1.182 sum 11.871 -13.666 -11.978 21.706 Atomic orbital electron populations 1.21813 0.93517 1.01697 1.02833 1.19532 0.95904 0.95484 0.91840 1.21835 1.01170 0.93879 1.03160 1.22391 1.03481 0.89831 0.97133 1.22330 1.05452 1.00151 0.93075 1.21421 1.12773 0.90052 0.94000 1.16990 0.77541 0.83357 0.84180 1.90738 1.46392 1.37254 1.70054 1.46063 1.67558 1.12270 1.09436 1.21662 0.95700 0.98798 0.78589 0.89425 1.22713 0.94455 1.00264 0.98823 1.22453 0.97387 0.97462 0.97665 1.22324 0.95148 0.97248 1.00158 1.22151 0.96832 0.95424 0.97717 0.90708 1.20737 0.91275 0.89839 0.94352 1.42522 1.47911 1.43478 1.05729 1.20407 1.17884 1.15812 0.92232 0.91272 1.27112 1.02650 1.01058 0.98517 1.70962 1.42336 1.44008 1.05177 0.82643 0.74237 0.74798 0.73202 1.21033 1.19707 1.22296 1.45798 1.44411 1.10169 1.04754 1.22479 1.02241 0.77920 1.02875 1.73100 1.17709 1.18346 1.03209 0.93139 0.89981 0.93436 0.89236 0.92528 0.90160 0.92445 0.81351 0.74925 0.90463 0.91064 0.90222 0.89872 0.92292 0.92162 0.96412 0.95464 0.80655 0.94491 0.89201 0.86768 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.18 71.98 0.66 -1.88 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -2.31 8.79 71.98 0.63 -1.68 16 4 C 0.03 0.67 6.12 43.05 0.26 0.94 16 5 C -0.18 -4.55 9.65 22.66 0.22 -4.33 16 6 C -0.05 -1.46 6.96 40.79 0.28 -1.18 16 7 C 0.59 16.68 7.79 86.59 0.67 17.35 16 8 O -0.56 -17.46 14.49 -4.12 -0.06 -17.52 16 9 N -0.70 -18.45 4.38 -442.61 -1.94 -20.39 16 10 C 0.16 4.08 3.19 45.72 0.15 4.23 16 11 H 0.09 2.38 7.64 -2.39 -0.02 2.36 16 12 C -0.12 -2.74 6.53 31.67 0.21 -2.53 16 13 C -0.11 -2.34 6.91 31.91 0.22 -2.12 16 14 C -0.11 -3.08 6.06 31.70 0.19 -2.89 16 15 C -0.10 -3.05 2.97 -10.07 -0.03 -3.08 16 16 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.16 6.12 4.18 86.38 0.36 6.48 16 18 N -0.75 -36.47 5.44 -343.45 -1.87 -38.34 16 19 C -0.33 -18.10 9.99 84.03 0.84 -17.26 16 20 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.10 -5.80 5.50 84.86 0.47 -5.33 16 22 N -0.98 -60.20 13.70 21.65 0.30 -59.90 16 23 Si 1.13 50.90 29.92 68.60 2.05 52.95 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 N -0.26 -6.76 3.75 -356.02 -1.33 -8.10 16 28 C 0.08 1.59 10.71 127.77 1.37 2.96 16 29 N -0.29 -7.64 11.90 -47.49 -0.57 -8.20 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.00 7.37 -2.39 -0.02 0.98 16 37 H 0.17 3.78 7.04 -2.91 -0.02 3.76 16 38 H 0.41 10.62 4.91 -92.71 -0.46 10.17 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.58 8.05 -2.38 -0.02 1.56 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 1.80 7.77 -2.39 -0.02 1.78 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.02 0.69 7.46 -2.39 -0.02 0.68 16 46 H 0.03 0.99 7.08 -2.39 -0.02 0.97 16 47 H 0.36 18.29 6.36 -92.71 -0.59 17.70 16 48 H 0.24 14.98 6.78 -92.70 -0.63 14.36 16 49 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.10 2.06 6.53 -2.39 -0.02 2.04 16 Total: -1.00 -69.78 403.49 3.08 -66.70 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: 0.03 Total: 43.31 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 6.47 Total: -10.52 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -5.41 Total: -134.93 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.06 Total: -17.52 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -69.78 3.08 -66.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272323024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.469 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds