Wall clock time and date at job start Tue Mar 31 2020 20:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.50708 * 109.47212 * 119.99519 * 2 1 3 5 5 N 1.30493 * 125.65231 * 304.15278 * 4 2 1 6 6 C 1.34120 * 109.25877 * 180.28959 * 5 4 2 7 7 C 1.34674 * 108.02094 * 359.72551 * 6 5 4 8 8 N 1.35041 * 125.64388 * 123.97410 * 4 2 1 9 9 C 1.46497 * 126.40405 * 359.97438 * 8 4 2 10 10 C 1.50701 * 109.46870 * 86.10225 * 9 8 4 11 11 O 1.21280 * 120.00313 * 5.40468 * 10 9 8 12 12 N 1.34776 * 120.00080 * 185.39681 * 10 9 8 13 13 C 1.47433 * 125.64524 * 4.57597 * 12 10 9 14 14 C 1.54905 * 104.83032 * 204.09092 * 13 12 10 15 15 C 1.55164 * 101.58267 * 322.98786 * 14 13 12 16 16 C 1.47023 * 125.65262 * 184.53082 * 12 10 9 17 17 H 1.08999 * 109.87984 * 59.40566 * 16 12 10 18 18 C 1.53004 * 109.87933 * 298.39259 * 16 12 10 19 19 N 1.46501 * 109.46867 * 175.08986 * 18 16 12 20 20 C 1.46501 * 120.00075 * 275.24296 * 19 18 16 21 21 C 1.36934 * 119.99378 * 95.24403 * 19 18 16 22 22 H 1.07992 * 120.00484 * 333.29084 * 21 19 18 23 23 C 1.38821 * 119.99721 * 153.02213 * 21 19 18 24 24 N 1.31620 * 119.99758 * 161.29456 * 23 21 19 25 25 Si 1.86796 * 119.99826 * 341.29310 * 23 21 19 26 26 H 1.48507 * 109.46888 * 84.86868 * 25 23 21 27 27 H 1.48496 * 109.47140 * 204.86561 * 25 23 21 28 28 H 1.48499 * 109.47551 * 324.86719 * 25 23 21 29 29 H 1.08995 * 109.47295 * 299.99865 * 1 2 3 30 30 H 1.08997 * 109.47353 * 60.00718 * 1 2 3 31 31 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47295 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.47408 * 64.47733 * 3 2 1 34 34 H 1.09002 * 109.47279 * 184.47579 * 3 2 1 35 35 H 1.08999 * 109.47096 * 304.47497 * 3 2 1 36 36 H 1.07999 * 125.99490 * 179.72125 * 6 5 4 37 37 H 1.07995 * 126.59486 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47117 * 326.10593 * 9 8 4 39 39 H 1.08996 * 109.47556 * 206.10449 * 9 8 4 40 40 H 1.08998 * 110.36625 * 322.92367 * 13 12 10 41 41 H 1.08998 * 110.36850 * 85.14320 * 13 12 10 42 42 H 1.08994 * 111.01051 * 81.06349 * 14 13 12 43 43 H 1.09003 * 111.00570 * 204.91963 * 14 13 12 44 44 H 1.08996 * 110.72108 * 277.13781 * 15 14 13 45 45 H 1.09006 * 110.71841 * 153.86560 * 15 14 13 46 46 H 1.09000 * 109.46886 * 55.09849 * 18 16 12 47 47 H 1.08995 * 109.47405 * 295.09459 * 18 16 12 48 48 H 1.08996 * 109.47017 * 272.38527 * 20 19 18 49 49 H 1.08999 * 109.47275 * 32.39178 * 20 19 18 50 50 H 1.09000 * 109.46696 * 152.38946 * 20 19 18 51 51 H 0.96998 * 119.99274 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7247 -0.4081 2.4622 6 6 2.3589 -1.2464 3.2951 7 6 3.0826 -2.1046 2.5511 8 7 2.8729 -1.7672 1.2411 9 6 3.4562 -2.4259 0.0698 10 6 4.7182 -1.7078 -0.3337 11 8 5.1466 -0.8032 0.3511 12 7 5.3709 -2.0711 -1.4555 13 6 4.9144 -3.0829 -2.4258 14 6 6.2061 -3.5692 -3.1290 15 6 7.0234 -2.2536 -3.2237 16 6 6.6556 -1.5233 -1.9149 17 1 7.4238 -1.6982 -1.1616 18 6 6.5171 -0.0224 -2.1779 19 7 7.8271 0.5361 -2.5216 20 6 8.7505 0.9448 -1.4601 21 6 8.1884 0.6761 -3.8349 22 1 7.7614 0.0267 -4.5847 23 6 9.0995 1.6566 -4.2034 24 7 9.7257 1.5725 -5.3580 25 14 9.4365 3.0952 -3.0606 26 1 10.4689 2.7063 -2.0665 27 1 9.9234 4.2531 -3.8527 28 1 8.1852 3.4699 -2.3541 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.7436 1.9327 0.9274 34 1 3.1270 1.4437 -0.0802 35 1 1.6126 1.9790 -0.8472 36 1 2.2998 -1.2353 4.3734 37 1 3.7085 -2.9048 2.9176 38 1 2.7436 -2.3991 -0.7546 39 1 3.6900 -3.4620 0.3144 40 1 4.4286 -3.9111 -1.9099 41 1 4.2326 -2.6349 -3.1487 42 1 6.7267 -4.3095 -2.5217 43 1 5.9860 -3.9645 -4.1206 44 1 6.7151 -1.6697 -4.0910 45 1 8.0921 -2.4653 -3.2601 46 1 6.1359 0.4695 -1.2830 47 1 5.8250 0.1393 -3.0043 48 1 8.5458 1.9776 -1.1783 49 1 8.6164 0.2981 -0.5930 50 1 9.7763 0.8627 -1.8195 51 1 10.3620 2.2578 -5.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275150284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:19 Heat of formation + Delta-G solvation = 57.339428 kcal Electronic energy + Delta-G solvation = -30485.155631 eV Core-core repulsion = 26614.740078 eV Total energy + Delta-G solvation = -3870.415553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.27267 -40.10385 -37.58778 -35.62609 -35.44137 -34.09868 -31.83804 -31.58879 -29.89285 -28.91955 -27.73478 -27.20963 -26.17401 -25.49631 -23.29752 -22.85626 -21.50011 -21.34092 -20.64199 -19.36368 -18.77950 -17.56850 -17.18816 -16.89222 -16.32750 -15.54238 -15.23281 -15.10137 -14.74709 -14.43437 -14.27423 -13.90804 -13.70944 -13.70278 -13.47176 -13.24162 -13.02325 -12.92811 -12.72116 -12.68945 -12.43466 -12.20015 -12.13099 -12.05365 -11.60317 -11.26974 -11.26591 -11.12842 -11.04549 -10.95089 -10.62178 -10.40725 -10.22210 -10.04748 -9.97941 -9.96732 -9.50981 -9.41137 -8.86023 -8.48914 -8.37066 -6.95508 -5.96504 -3.34582 1.87897 2.41544 2.52006 3.02698 3.15810 3.36836 3.51242 3.55852 4.19810 4.24649 4.34520 4.52660 4.54451 4.56282 4.64340 4.89888 4.92288 4.99886 5.03408 5.10716 5.14384 5.31332 5.35855 5.40850 5.45412 5.57700 5.58703 5.60943 5.73360 5.78919 5.80885 5.87584 5.88568 6.07692 6.09821 6.15286 6.24344 6.29874 6.31954 6.36479 6.46037 6.54634 6.66129 6.72288 6.72635 6.85465 7.05726 7.48370 7.93679 8.05879 8.08858 8.30358 8.93026 9.71829 10.06602 11.19318 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003496 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.639468 B = 8008.295309 C = 8874.379941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.141 4.141 4 C 0.228 3.772 5 N -0.487 5.487 6 C -0.028 4.028 7 C -0.051 4.051 8 N -0.441 5.441 9 C 0.088 3.912 10 C 0.506 3.494 11 O -0.513 6.513 12 N -0.609 5.609 13 C 0.095 3.905 14 C -0.136 4.136 15 C -0.110 4.110 16 C 0.118 3.882 17 H 0.068 0.932 18 C 0.145 3.855 19 N -0.607 5.607 20 C 0.103 3.897 21 C -0.264 4.264 22 H 0.089 0.911 23 C 0.026 3.974 24 N -0.910 5.910 25 Si 0.893 3.107 26 H -0.288 1.288 27 H -0.306 1.306 28 H -0.278 1.278 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.009 0.991 49 H 0.033 0.967 50 H 0.058 0.942 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.185 -13.487 8.920 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.034 4.034 5 N -0.205 5.205 6 C -0.176 4.176 7 C -0.183 4.183 8 N -0.124 5.124 9 C -0.039 4.039 10 C 0.292 3.708 11 O -0.388 6.388 12 N -0.344 5.344 13 C -0.028 4.028 14 C -0.174 4.174 15 C -0.148 4.148 16 C 0.014 3.986 17 H 0.086 0.914 18 C 0.017 3.983 19 N -0.330 5.330 20 C -0.042 4.042 21 C -0.392 4.392 22 H 0.106 0.894 23 C -0.173 4.173 24 N -0.553 5.553 25 Si 0.724 3.276 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.204 1.204 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.027 0.973 49 H 0.051 0.949 50 H 0.077 0.923 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.321 -12.322 9.403 22.509 hybrid contribution 1.099 -0.030 0.396 1.169 sum -15.222 -12.353 9.799 21.916 Atomic orbital electron populations 1.21772 0.93052 1.01919 1.02821 1.19544 0.96471 0.96183 0.90607 1.21783 1.01836 0.93700 1.02595 1.23174 0.94951 0.89581 0.95730 1.70160 1.25561 1.25845 0.98908 1.22197 1.00360 0.95567 0.99439 1.22588 1.07314 1.05738 0.82621 1.44867 1.35585 1.25939 1.05978 1.21665 0.95277 0.97889 0.89055 1.20208 0.85407 0.84516 0.80715 1.90806 1.66812 1.29010 1.52140 1.48670 1.23539 1.40331 1.21875 1.22411 0.97888 0.90727 0.91756 1.22824 0.95340 0.98512 1.00765 1.22605 1.00929 0.93993 0.97234 1.22549 0.82980 0.97308 0.95796 0.91351 1.21070 0.87944 0.90001 0.99263 1.44055 1.12527 1.73356 1.03094 1.21390 0.94723 0.96740 0.91320 1.18919 1.24014 1.13330 0.82955 0.89374 1.25243 0.98336 0.97926 0.95797 1.69813 1.27708 1.35119 1.22686 0.86933 0.77969 0.83180 0.79524 1.21483 1.23489 1.20397 0.91254 0.91832 0.92932 0.90643 0.91529 0.92071 0.91814 0.81477 0.81225 0.86535 0.86213 0.91202 0.90925 0.91063 0.89910 0.89605 0.89800 0.93168 0.92553 0.97305 0.94878 0.92346 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.15 37.16 0.34 -0.94 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -1.76 9.18 37.16 0.34 -1.42 16 4 C 0.23 3.06 6.43 -155.42 -1.00 2.06 16 5 N -0.49 -7.19 11.22 -10.82 -0.12 -7.31 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 7 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 8 N -0.44 -5.34 2.25 -115.19 -0.26 -5.60 16 9 C 0.09 0.83 5.12 -5.19 -0.03 0.80 16 10 C 0.51 6.89 7.73 -10.98 -0.08 6.80 16 11 O -0.51 -9.49 15.25 5.56 0.08 -9.41 16 12 N -0.61 -7.82 3.07 -163.01 -0.50 -8.32 16 13 C 0.10 0.84 6.70 -2.53 -0.02 0.83 16 14 C -0.14 -1.35 7.08 -24.58 -0.17 -1.52 16 15 C -0.11 -1.61 5.71 -24.89 -0.14 -1.75 16 16 C 0.12 1.93 3.14 -66.95 -0.21 1.72 16 17 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 18 C 0.15 2.92 5.14 -4.04 -0.02 2.90 16 19 N -0.61 -14.41 2.59 -181.12 -0.47 -14.88 16 20 C 0.10 2.38 8.37 59.85 0.50 2.88 16 21 C -0.26 -7.11 9.43 -15.06 -0.14 -7.25 16 22 H 0.09 2.44 6.77 -52.49 -0.36 2.09 16 23 C 0.03 0.74 5.26 -17.43 -0.09 0.65 16 24 N -0.91 -27.43 13.97 55.49 0.78 -26.65 16 25 Si 0.89 23.14 23.97 -169.99 -4.07 19.07 16 26 H -0.29 -7.20 6.49 56.52 0.37 -6.83 16 27 H -0.31 -8.05 7.11 56.52 0.40 -7.64 16 28 H -0.28 -7.31 6.71 56.52 0.38 -6.93 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.76 6.79 -51.93 -0.35 0.41 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 0.80 7.12 -51.93 -0.37 0.43 16 39 H 0.12 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.07 0.41 7.61 -51.93 -0.40 0.01 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.42 6.54 -51.93 -0.34 1.08 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.05 1.09 6.54 -51.93 -0.34 0.75 16 47 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 48 H 0.01 0.22 5.33 -51.93 -0.28 -0.06 16 49 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 50 H 0.06 1.39 6.10 -51.93 -0.32 1.08 16 51 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -35.11 398.58 -8.67 -43.78 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.68 Total: -0.71 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.43 Total: 4.02 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.57 Total: -62.75 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.07 Total: 19.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.11 -8.67 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.117 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds