Wall clock time and date at job start Tue Mar 31 2020 20:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.50708 * 109.47212 * 119.99519 * 2 1 3 5 5 N 1.30493 * 125.65231 * 304.15278 * 4 2 1 6 6 C 1.34120 * 109.25877 * 180.28959 * 5 4 2 7 7 C 1.34674 * 108.02094 * 359.72551 * 6 5 4 8 8 N 1.35041 * 125.64388 * 123.97410 * 4 2 1 9 9 C 1.46497 * 126.40405 * 359.97438 * 8 4 2 10 10 C 1.50701 * 109.46870 * 86.10225 * 9 8 4 11 11 O 1.21280 * 120.00313 * 5.40468 * 10 9 8 12 12 N 1.34776 * 120.00080 * 185.39681 * 10 9 8 13 13 C 1.47433 * 125.64524 * 4.57597 * 12 10 9 14 14 C 1.54905 * 104.83032 * 204.09092 * 13 12 10 15 15 C 1.55164 * 101.58267 * 322.98786 * 14 13 12 16 16 C 1.47023 * 125.65262 * 184.53082 * 12 10 9 17 17 H 1.08999 * 109.87984 * 59.40566 * 16 12 10 18 18 C 1.53004 * 109.87933 * 298.39259 * 16 12 10 19 19 N 1.46501 * 109.46867 * 175.08986 * 18 16 12 20 20 C 1.46501 * 120.00075 * 275.24296 * 19 18 16 21 21 C 1.36934 * 119.99378 * 95.24403 * 19 18 16 22 22 H 1.07992 * 120.00484 * 333.29084 * 21 19 18 23 23 C 1.38821 * 119.99721 * 153.02213 * 21 19 18 24 24 N 1.31620 * 119.99758 * 161.29456 * 23 21 19 25 25 Si 1.86796 * 119.99826 * 341.29310 * 23 21 19 26 26 H 1.48507 * 109.46888 * 84.86868 * 25 23 21 27 27 H 1.48496 * 109.47140 * 204.86561 * 25 23 21 28 28 H 1.48499 * 109.47551 * 324.86719 * 25 23 21 29 29 H 1.08995 * 109.47295 * 299.99865 * 1 2 3 30 30 H 1.08997 * 109.47353 * 60.00718 * 1 2 3 31 31 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47295 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.47408 * 64.47733 * 3 2 1 34 34 H 1.09002 * 109.47279 * 184.47579 * 3 2 1 35 35 H 1.08999 * 109.47096 * 304.47497 * 3 2 1 36 36 H 1.07999 * 125.99490 * 179.72125 * 6 5 4 37 37 H 1.07995 * 126.59486 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47117 * 326.10593 * 9 8 4 39 39 H 1.08996 * 109.47556 * 206.10449 * 9 8 4 40 40 H 1.08998 * 110.36625 * 322.92367 * 13 12 10 41 41 H 1.08998 * 110.36850 * 85.14320 * 13 12 10 42 42 H 1.08994 * 111.01051 * 81.06349 * 14 13 12 43 43 H 1.09003 * 111.00570 * 204.91963 * 14 13 12 44 44 H 1.08996 * 110.72108 * 277.13781 * 15 14 13 45 45 H 1.09006 * 110.71841 * 153.86560 * 15 14 13 46 46 H 1.09000 * 109.46886 * 55.09849 * 18 16 12 47 47 H 1.08995 * 109.47405 * 295.09459 * 18 16 12 48 48 H 1.08996 * 109.47017 * 272.38527 * 20 19 18 49 49 H 1.08999 * 109.47275 * 32.39178 * 20 19 18 50 50 H 1.09000 * 109.46696 * 152.38946 * 20 19 18 51 51 H 0.96998 * 119.99274 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 1.7247 -0.4081 2.4622 6 6 2.3589 -1.2464 3.2951 7 6 3.0826 -2.1046 2.5511 8 7 2.8729 -1.7672 1.2411 9 6 3.4562 -2.4259 0.0698 10 6 4.7182 -1.7078 -0.3337 11 8 5.1466 -0.8032 0.3511 12 7 5.3709 -2.0711 -1.4555 13 6 4.9144 -3.0829 -2.4258 14 6 6.2061 -3.5692 -3.1290 15 6 7.0234 -2.2536 -3.2237 16 6 6.6556 -1.5233 -1.9149 17 1 7.4238 -1.6982 -1.1616 18 6 6.5171 -0.0224 -2.1779 19 7 7.8271 0.5361 -2.5216 20 6 8.7505 0.9448 -1.4601 21 6 8.1884 0.6761 -3.8349 22 1 7.7614 0.0267 -4.5847 23 6 9.0995 1.6566 -4.2034 24 7 9.7257 1.5725 -5.3580 25 14 9.4365 3.0952 -3.0606 26 1 10.4689 2.7063 -2.0665 27 1 9.9234 4.2531 -3.8527 28 1 8.1852 3.4699 -2.3541 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.7436 1.9327 0.9274 34 1 3.1270 1.4437 -0.0802 35 1 1.6126 1.9790 -0.8472 36 1 2.2998 -1.2353 4.3734 37 1 3.7085 -2.9048 2.9176 38 1 2.7436 -2.3991 -0.7546 39 1 3.6900 -3.4620 0.3144 40 1 4.4286 -3.9111 -1.9099 41 1 4.2326 -2.6349 -3.1487 42 1 6.7267 -4.3095 -2.5217 43 1 5.9860 -3.9645 -4.1206 44 1 6.7151 -1.6697 -4.0910 45 1 8.0921 -2.4653 -3.2601 46 1 6.1359 0.4695 -1.2830 47 1 5.8250 0.1393 -3.0043 48 1 8.5458 1.9776 -1.1783 49 1 8.6164 0.2981 -0.5930 50 1 9.7763 0.8627 -1.8195 51 1 10.3620 2.2578 -5.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275150284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:17 Heat of formation + Delta-G solvation = 35.036293 kcal Electronic energy + Delta-G solvation = -30486.122768 eV Core-core repulsion = 26614.740078 eV Total energy + Delta-G solvation = -3871.382690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.16383 -41.20067 -38.82194 -37.35963 -36.30140 -35.03505 -33.81430 -32.71660 -31.27688 -29.82392 -28.67464 -28.07423 -28.00602 -27.07821 -24.45745 -23.78519 -22.93259 -22.35503 -21.81089 -20.47230 -19.73664 -18.94332 -18.50935 -18.10351 -17.56963 -17.05492 -16.48165 -16.18889 -15.78761 -15.68835 -15.50750 -15.27457 -15.08045 -14.74164 -14.57396 -14.34896 -14.32814 -14.18859 -13.98258 -13.90366 -13.78470 -13.49913 -13.31264 -13.04368 -12.88991 -12.63308 -12.43596 -12.32023 -12.16964 -12.15449 -12.02417 -11.91374 -11.69249 -11.64355 -11.50351 -11.30977 -10.92635 -10.81289 -10.44337 -9.82269 -9.27067 -8.92400 -8.18392 -5.52253 0.95831 1.27125 1.37540 1.44305 1.45439 1.67186 2.07146 2.21321 2.39222 3.07941 3.27881 3.38497 3.40788 3.68587 3.71817 3.75752 3.88541 4.01475 4.03831 4.11362 4.17357 4.30215 4.33499 4.37623 4.45513 4.46714 4.57594 4.58445 4.69262 4.71084 4.76423 4.79781 4.86191 4.88231 4.94265 4.94398 5.03736 5.08516 5.12065 5.18559 5.24378 5.30687 5.39542 5.41698 5.45554 5.84780 5.86499 6.11911 6.17950 6.50469 6.85742 7.04075 7.17141 7.58464 7.97245 9.00725 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003496 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.639468 B = 8008.295309 C = 8874.379941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.008 4.008 3 C -0.136 4.136 4 C 0.212 3.788 5 N -0.522 5.522 6 C -0.057 4.057 7 C -0.047 4.047 8 N -0.445 5.445 9 C 0.093 3.907 10 C 0.503 3.497 11 O -0.572 6.572 12 N -0.606 5.606 13 C 0.092 3.908 14 C -0.123 4.123 15 C -0.110 4.110 16 C 0.130 3.870 17 H 0.048 0.952 18 C 0.150 3.850 19 N -0.618 5.618 20 C 0.106 3.894 21 C -0.241 4.241 22 H 0.075 0.925 23 C -0.025 4.025 24 N -0.950 5.950 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.310 1.310 28 H -0.286 1.286 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.182 0.818 37 H 0.200 0.800 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.002 0.998 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 -16.437 9.194 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 C -0.194 4.194 4 C -0.051 4.051 5 N -0.241 5.241 6 C -0.203 4.203 7 C -0.179 4.179 8 N -0.127 5.127 9 C -0.032 4.032 10 C 0.291 3.709 11 O -0.450 6.450 12 N -0.340 5.340 13 C -0.029 4.029 14 C -0.160 4.160 15 C -0.148 4.148 16 C 0.024 3.976 17 H 0.067 0.933 18 C 0.024 3.976 19 N -0.343 5.343 20 C -0.039 4.039 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.220 4.220 24 N -0.596 5.596 25 Si 0.771 3.229 26 H -0.200 1.200 27 H -0.239 1.239 28 H -0.212 1.212 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.101 0.899 36 H 0.199 0.801 37 H 0.217 0.783 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.263 -15.325 9.690 25.735 hybrid contribution 1.656 0.856 0.347 1.896 sum -16.608 -14.469 10.036 24.205 Atomic orbital electron populations 1.21707 0.91430 1.02671 1.02920 1.19645 0.97757 0.94885 0.90565 1.21718 0.99596 0.95376 1.02689 1.23514 0.95468 0.90235 0.95895 1.70106 1.26941 1.26984 1.00048 1.22632 1.01157 0.96074 1.00436 1.23098 1.06514 1.05771 0.82489 1.45051 1.35116 1.25715 1.06847 1.21957 0.93337 0.98690 0.89244 1.21038 0.86224 0.83790 0.79895 1.90793 1.68578 1.31710 1.53966 1.48687 1.22150 1.40718 1.22431 1.22763 0.97591 0.91052 0.91500 1.22818 0.94832 0.95802 1.02588 1.22448 1.00530 0.96678 0.95168 1.22029 0.84735 0.94665 0.96196 0.93337 1.21107 0.85965 0.92538 0.98004 1.44182 1.14055 1.73798 1.02215 1.21341 0.94034 0.96785 0.91755 1.18947 1.22229 1.11795 0.84048 0.90750 1.25727 0.99324 0.99981 0.97006 1.69898 1.29284 1.36025 1.24436 0.86149 0.77698 0.80833 0.78232 1.20049 1.23932 1.21244 0.92860 0.89986 0.91824 0.89015 0.92923 0.95450 0.89898 0.80064 0.78272 0.83212 0.81969 0.86332 0.89529 0.89793 0.87713 0.91924 0.91939 0.94845 0.93107 0.98022 0.92731 0.93271 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.15 71.98 0.66 -1.48 16 2 C -0.01 -0.18 3.26 -11.54 -0.04 -0.21 16 3 C -0.14 -3.41 9.18 71.98 0.66 -2.75 16 4 C 0.21 5.41 6.43 138.13 0.89 6.30 16 5 N -0.52 -15.31 11.22 -188.13 -2.11 -17.42 16 6 C -0.06 -1.41 11.87 83.53 0.99 -0.42 16 7 C -0.05 -0.98 11.58 83.09 0.96 -0.02 16 8 N -0.45 -9.59 2.25 -518.34 -1.16 -10.75 16 9 C 0.09 1.33 5.12 85.63 0.44 1.77 16 10 C 0.50 12.42 7.73 87.66 0.68 13.09 16 11 O -0.57 -20.94 15.25 -3.03 -0.05 -20.99 16 12 N -0.61 -13.87 3.07 -788.04 -2.42 -16.28 16 13 C 0.09 1.16 6.70 86.85 0.58 1.75 16 14 C -0.12 -1.95 7.08 31.99 0.23 -1.73 16 15 C -0.11 -3.14 5.71 31.78 0.18 -2.96 16 16 C 0.13 4.13 3.14 45.34 0.14 4.28 16 17 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 18 C 0.15 6.13 5.14 86.38 0.44 6.57 16 19 N -0.62 -29.77 2.59 -726.94 -1.88 -31.66 16 20 C 0.11 4.89 8.37 127.77 1.07 5.96 16 21 C -0.24 -13.21 9.43 84.04 0.79 -12.42 16 22 H 0.07 4.24 6.77 -2.91 -0.02 4.22 16 23 C -0.03 -1.46 5.26 84.86 0.45 -1.01 16 24 N -0.95 -58.49 13.97 21.65 0.30 -58.19 16 25 Si 0.94 48.49 23.97 68.60 1.64 50.14 16 26 H -0.27 -13.41 6.49 99.48 0.65 -12.76 16 27 H -0.31 -16.12 7.11 99.48 0.71 -15.42 16 28 H -0.29 -14.96 6.71 99.48 0.67 -14.29 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 1.59 6.79 -2.39 -0.02 1.57 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.15 1.18 7.12 -2.39 -0.02 1.16 16 39 H 0.16 0.99 8.13 -2.39 -0.02 0.97 16 40 H 0.12 0.48 7.61 -2.39 -0.02 0.46 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 2.08 6.54 -2.39 -0.02 2.06 16 45 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.03 1.48 6.54 -2.39 -0.02 1.47 16 47 H 0.05 2.09 7.88 -2.39 -0.02 2.07 16 48 H 0.00 0.10 5.33 -2.39 -0.01 0.08 16 49 H 0.05 2.26 8.07 -2.39 -0.02 2.24 16 50 H 0.05 2.35 6.10 -2.39 -0.01 2.33 16 51 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.58 398.58 4.25 -77.33 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.80 Total: 11.12 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 9.12 Total: 16.71 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -7.27 Total: -134.30 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.64 Total: 50.14 kcal Total: -81.58 4.25 -77.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.361 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds