Wall clock time and date at job start Tue Mar 31 2020 19:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.35360 * 126.38519 * 325.02988 * 4 2 1 6 6 C 1.41507 * 105.50290 * 179.97438 * 5 4 2 7 7 C 1.47707 * 126.52259 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99405 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00495 * 180.02562 * 7 6 5 10 10 C 1.47486 * 127.03083 * 0.02562 * 9 7 6 11 11 C 1.54004 * 107.08237 * 154.51911 * 10 9 7 12 12 C 1.54618 * 105.04383 * 1.30687 * 11 10 9 13 13 C 1.52998 * 110.74052 * 263.51153 * 12 11 10 14 14 C 1.53005 * 110.73772 * 140.18605 * 12 11 10 15 15 N 1.46501 * 109.46923 * 180.02562 * 14 12 11 16 16 C 1.36936 * 120.00112 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00041 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47257 * 59.99859 * 20 18 16 22 22 H 1.48494 * 109.47261 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46929 * 299.99932 * 20 18 16 24 24 C 1.48109 * 127.03469 * 179.71055 * 9 7 6 25 25 N 1.31816 * 106.96268 * 359.97438 * 6 5 4 26 26 N 1.28465 * 110.07007 * 359.75825 * 25 6 5 27 27 C 1.46506 * 124.88505 * 180.23613 * 26 25 6 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 35 35 H 1.08001 * 127.25086 * 359.93841 * 5 4 2 36 36 H 1.09000 * 109.91417 * 273.88363 * 10 9 7 37 37 H 1.09007 * 109.91120 * 35.16117 * 10 9 7 38 38 H 1.09002 * 110.32124 * 120.19779 * 11 10 9 39 39 H 1.08998 * 110.32421 * 242.30914 * 11 10 9 40 40 H 1.08995 * 109.47060 * 59.99882 * 13 12 11 41 41 H 1.09000 * 109.47422 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46646 * 300.00155 * 13 12 11 43 43 H 1.09000 * 109.47013 * 299.99936 * 14 12 11 44 44 H 1.08997 * 109.46908 * 60.00057 * 14 12 11 45 45 H 0.96999 * 119.99813 * 359.97438 * 15 14 12 46 46 H 0.97011 * 120.00176 * 179.97438 * 19 18 16 47 47 H 1.09000 * 110.66464 * 337.76194 * 24 9 7 48 48 H 1.09003 * 110.66773 * 100.88356 * 24 9 7 49 49 H 1.08995 * 109.47011 * 270.18294 * 27 26 25 50 50 H 1.09004 * 109.46489 * 30.18301 * 27 26 25 51 51 H 1.09000 * 109.46834 * 150.18197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4582 -0.6968 2.4561 6 6 2.2883 -1.5020 3.2716 7 6 2.0885 -1.8021 4.7040 8 8 1.1326 -1.3381 5.2946 9 7 2.9665 -2.5895 5.3565 10 6 4.1722 -3.2289 4.7973 11 6 5.1491 -3.4529 5.9666 12 6 4.4043 -2.9316 7.2173 13 6 4.8205 -1.4942 7.5359 14 6 4.6531 -3.8479 8.4171 15 7 3.9355 -3.3296 9.5844 16 6 4.0105 -3.9886 10.7824 17 1 4.5983 -4.8908 10.8666 18 6 3.3310 -3.4973 11.8885 19 7 2.6143 -2.3982 11.7859 20 14 3.4338 -4.3960 13.5230 21 1 4.8494 -4.4537 13.9680 22 1 2.6248 -3.6733 14.5370 23 1 2.9086 -5.7758 13.3631 24 6 2.9215 -2.9843 6.7833 25 7 3.2738 -1.9334 2.5098 26 7 3.1358 -1.4844 1.3142 27 6 4.0468 -1.7677 0.2023 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.5567 -0.1798 2.7500 36 1 3.9094 -4.1850 4.3446 37 1 4.6276 -2.5755 4.0530 38 1 5.3735 -4.5141 6.0743 39 1 6.0668 -2.8867 5.8070 40 1 4.5805 -0.8505 6.6897 41 1 4.2845 -1.1481 8.4196 42 1 5.8933 -1.4602 7.7255 43 1 4.2959 -4.8519 8.1878 44 1 5.7210 -3.8826 8.6325 45 1 3.4079 -2.5191 9.5089 46 1 2.1391 -2.0549 12.5588 47 1 2.3275 -2.2754 7.3600 48 1 2.5273 -3.9949 6.8905 49 1 4.8323 -1.0126 0.1749 50 1 4.4938 -2.7522 0.3408 51 1 3.4920 -1.7492 -0.7357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278491373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:17 Heat of formation + Delta-G solvation = 53.793823 kcal Electronic energy + Delta-G solvation = -29390.389387 eV Core-core repulsion = 25519.820085 eV Total energy + Delta-G solvation = -3870.569302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.90581 -39.81190 -37.73237 -36.16344 -34.69777 -33.70071 -32.51765 -30.38319 -29.86319 -29.06597 -28.01284 -27.60247 -26.34649 -25.45286 -23.69493 -23.15290 -22.24973 -21.73426 -20.29526 -18.90474 -18.66804 -17.37223 -16.98484 -16.57619 -16.38962 -15.65876 -15.24352 -14.90577 -14.50779 -14.33628 -14.20013 -14.09794 -13.76432 -13.57986 -13.45518 -13.27335 -13.07572 -12.92586 -12.74864 -12.56116 -12.37202 -12.18401 -12.03137 -11.92145 -11.66268 -11.47234 -11.44481 -11.30989 -10.93326 -10.78370 -10.72323 -10.39617 -10.33159 -10.22784 -9.93442 -9.83081 -9.54531 -9.25978 -9.10074 -8.80502 -8.38608 -6.84289 -5.68400 -2.97213 1.52339 1.97646 2.20973 3.16283 3.49372 3.53424 3.53764 3.54898 4.02688 4.12803 4.35931 4.53924 4.59930 4.66737 4.70068 4.83923 4.90666 4.93271 4.98417 5.14783 5.15794 5.22007 5.33138 5.37317 5.43003 5.50525 5.58934 5.59603 5.64245 5.66831 5.78725 5.79331 5.91607 5.94604 5.99979 6.13087 6.17304 6.22694 6.26903 6.30462 6.43207 6.49359 6.54942 6.68954 6.76526 6.85705 6.95192 7.68852 7.76173 7.81261 8.37297 8.50167 9.61183 10.19330 10.53942 11.54259 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024643 B = 0.002314 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.959833 B =12096.153779 C =12760.815856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.144 4.144 4 C 0.015 3.985 5 C -0.173 4.173 6 C -0.004 4.004 7 C 0.616 3.384 8 O -0.532 6.532 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.125 4.125 12 C -0.079 4.079 13 C -0.129 4.129 14 C 0.169 3.831 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.121 3.879 25 N -0.259 5.259 26 N -0.285 5.285 27 C 0.086 3.914 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 4.007 -31.316 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.201 4.201 6 C -0.164 4.164 7 C 0.402 3.598 8 O -0.407 6.407 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.186 4.186 14 C 0.041 3.959 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.001 4.001 25 N -0.094 5.094 26 N -0.073 5.073 27 C -0.055 4.055 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.115 0.885 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.255 3.508 -30.986 31.354 hybrid contribution -0.648 0.127 0.833 1.063 sum 2.607 3.635 -30.153 30.483 Atomic orbital electron populations 1.21836 0.92997 1.02635 1.02712 1.19665 0.96825 0.95422 0.92353 1.21851 1.01016 0.94570 1.02769 1.21331 0.91133 1.00325 0.98122 1.21452 1.02991 1.04600 0.91072 1.21883 0.95640 1.03779 0.95058 1.16463 0.81868 0.78080 0.83375 1.90823 1.30188 1.52551 1.67159 1.48608 1.25231 1.47872 1.12198 1.22185 0.85224 0.97726 0.96549 1.22609 0.97991 1.01967 0.93775 1.21793 0.94009 0.97228 0.94962 1.21695 1.01147 0.94262 1.01495 1.20625 0.95550 0.93914 0.85774 1.42414 1.58341 1.31009 1.05823 1.19162 1.24748 1.05844 0.87333 0.91299 1.24735 1.00282 0.97869 0.98076 1.69652 1.35673 1.22744 1.29975 0.86278 0.77250 0.78808 0.83889 1.21368 1.21755 1.21340 1.22537 0.97100 1.01079 0.79351 1.73642 1.23450 1.21105 0.91224 1.45357 1.19515 1.34638 1.07784 1.22129 0.93024 1.04216 0.86109 0.91787 0.92154 0.91595 0.90311 0.91717 0.91716 0.92752 0.82228 0.91998 0.89568 0.90444 0.90769 0.93746 0.91134 0.92798 0.96106 0.95920 0.77989 0.93458 0.89179 0.90618 0.89805 0.88464 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.78 37.16 0.33 -0.50 16 2 C -0.02 -0.13 3.10 -91.77 -0.28 -0.42 16 3 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 4 C 0.01 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.18 9.96 -39.36 -0.39 -2.57 16 6 C 0.00 -0.05 6.99 -82.76 -0.58 -0.63 16 7 C 0.62 10.95 7.90 -12.39 -0.10 10.85 16 8 O -0.53 -11.23 17.13 5.30 0.09 -11.14 16 9 N -0.61 -10.00 3.19 -171.14 -0.55 -10.55 16 10 C 0.11 1.42 6.27 -2.98 -0.02 1.40 16 11 C -0.12 -1.65 6.09 -25.36 -0.15 -1.81 16 12 C -0.08 -1.33 0.65 -152.82 -0.10 -1.43 16 13 C -0.13 -2.24 8.31 37.16 0.31 -1.94 16 14 C 0.17 3.43 5.11 -4.04 -0.02 3.41 16 15 N -0.73 -18.70 5.16 -59.91 -0.31 -19.01 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.40 5.50 -17.44 -0.10 -0.49 16 19 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 20 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 C 0.12 2.20 5.65 -2.32 -0.01 2.18 16 25 N -0.26 -3.26 9.20 33.42 0.31 -2.95 16 26 N -0.29 -2.71 3.70 -63.85 -0.24 -2.95 16 27 C 0.09 0.39 11.11 59.85 0.66 1.05 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 7.35 -51.93 -0.38 0.04 16 31 H 0.08 0.33 6.86 -51.93 -0.36 -0.03 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.16 1.92 7.47 -52.49 -0.39 1.53 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.10 6.20 -51.93 -0.32 0.78 16 38 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 39 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 40 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.07 1.43 6.69 -51.93 -0.35 1.08 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.39 10.45 6.21 -40.82 -0.25 10.19 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.09 1.89 7.75 -51.93 -0.40 1.49 16 48 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 0.20 6.87 -51.93 -0.36 -0.16 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -35.36 405.57 -8.28 -43.64 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.66 Total: 5.77 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.74 Total: 1.39 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.06 Total: -63.62 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.36 -8.28 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278491373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.431 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds