Wall clock time and date at job start Tue Mar 31 2020 19:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.35360 * 126.38519 * 325.02988 * 4 2 1 6 6 C 1.41507 * 105.50290 * 179.97438 * 5 4 2 7 7 C 1.47707 * 126.52259 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99405 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00495 * 180.02562 * 7 6 5 10 10 C 1.47486 * 127.03083 * 0.02562 * 9 7 6 11 11 C 1.54004 * 107.08237 * 154.51911 * 10 9 7 12 12 C 1.54618 * 105.04383 * 1.30687 * 11 10 9 13 13 C 1.52998 * 110.74052 * 263.51153 * 12 11 10 14 14 C 1.53005 * 110.73772 * 140.18605 * 12 11 10 15 15 N 1.46501 * 109.46923 * 180.02562 * 14 12 11 16 16 C 1.36936 * 120.00112 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99731 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00041 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47257 * 59.99859 * 20 18 16 22 22 H 1.48494 * 109.47261 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46929 * 299.99932 * 20 18 16 24 24 C 1.48109 * 127.03469 * 179.71055 * 9 7 6 25 25 N 1.31816 * 106.96268 * 359.97438 * 6 5 4 26 26 N 1.28465 * 110.07007 * 359.75825 * 25 6 5 27 27 C 1.46506 * 124.88505 * 180.23613 * 26 25 6 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 34 34 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 35 35 H 1.08001 * 127.25086 * 359.93841 * 5 4 2 36 36 H 1.09000 * 109.91417 * 273.88363 * 10 9 7 37 37 H 1.09007 * 109.91120 * 35.16117 * 10 9 7 38 38 H 1.09002 * 110.32124 * 120.19779 * 11 10 9 39 39 H 1.08998 * 110.32421 * 242.30914 * 11 10 9 40 40 H 1.08995 * 109.47060 * 59.99882 * 13 12 11 41 41 H 1.09000 * 109.47422 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46646 * 300.00155 * 13 12 11 43 43 H 1.09000 * 109.47013 * 299.99936 * 14 12 11 44 44 H 1.08997 * 109.46908 * 60.00057 * 14 12 11 45 45 H 0.96999 * 119.99813 * 359.97438 * 15 14 12 46 46 H 0.97011 * 120.00176 * 179.97438 * 19 18 16 47 47 H 1.09000 * 110.66464 * 337.76194 * 24 9 7 48 48 H 1.09003 * 110.66773 * 100.88356 * 24 9 7 49 49 H 1.08995 * 109.47011 * 270.18294 * 27 26 25 50 50 H 1.09004 * 109.46489 * 30.18301 * 27 26 25 51 51 H 1.09000 * 109.46834 * 150.18197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4582 -0.6968 2.4561 6 6 2.2883 -1.5020 3.2716 7 6 2.0885 -1.8021 4.7040 8 8 1.1326 -1.3381 5.2946 9 7 2.9665 -2.5895 5.3565 10 6 4.1722 -3.2289 4.7973 11 6 5.1491 -3.4529 5.9666 12 6 4.4043 -2.9316 7.2173 13 6 4.8205 -1.4942 7.5359 14 6 4.6531 -3.8479 8.4171 15 7 3.9355 -3.3296 9.5844 16 6 4.0105 -3.9886 10.7824 17 1 4.5983 -4.8908 10.8666 18 6 3.3310 -3.4973 11.8885 19 7 2.6143 -2.3982 11.7859 20 14 3.4338 -4.3960 13.5230 21 1 4.8494 -4.4537 13.9680 22 1 2.6248 -3.6733 14.5370 23 1 2.9086 -5.7758 13.3631 24 6 2.9215 -2.9843 6.7833 25 7 3.2738 -1.9334 2.5098 26 7 3.1358 -1.4844 1.3142 27 6 4.0468 -1.7677 0.2023 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.5567 -0.1798 2.7500 36 1 3.9094 -4.1850 4.3446 37 1 4.6276 -2.5755 4.0530 38 1 5.3735 -4.5141 6.0743 39 1 6.0668 -2.8867 5.8070 40 1 4.5805 -0.8505 6.6897 41 1 4.2845 -1.1481 8.4196 42 1 5.8933 -1.4602 7.7255 43 1 4.2959 -4.8519 8.1878 44 1 5.7210 -3.8826 8.6325 45 1 3.4079 -2.5191 9.5089 46 1 2.1391 -2.0549 12.5588 47 1 2.3275 -2.2754 7.3600 48 1 2.5273 -3.9949 6.8905 49 1 4.8323 -1.0126 0.1749 50 1 4.4938 -2.7522 0.3408 51 1 3.4920 -1.7492 -0.7357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278491373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:15 Heat of formation + Delta-G solvation = 30.804324 kcal Electronic energy + Delta-G solvation = -29391.386286 eV Core-core repulsion = 25519.820085 eV Total energy + Delta-G solvation = -3871.566202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.76407 -41.16493 -39.17341 -36.74266 -36.45243 -34.61311 -34.13232 -32.19858 -30.69697 -30.41969 -28.95490 -28.02697 -27.76966 -26.99150 -25.29379 -23.92645 -23.65008 -22.86926 -21.12735 -20.19969 -19.98077 -19.04560 -18.01425 -17.62122 -17.46879 -16.97665 -16.54194 -16.38043 -15.61391 -15.49406 -15.47175 -15.17807 -14.98888 -14.73370 -14.64166 -14.49435 -13.97195 -13.91697 -13.60986 -13.52203 -13.49118 -13.36003 -13.04128 -12.99332 -12.91092 -12.75789 -12.64307 -12.52392 -12.20337 -12.11224 -12.08225 -11.77506 -11.73720 -11.71921 -11.50242 -11.33025 -11.27171 -10.90811 -10.16744 -9.94685 -9.69979 -8.96533 -7.91754 -5.20731 0.47533 1.08219 1.47140 1.49572 1.51098 1.57054 1.94979 2.28974 2.57842 3.17393 3.40707 3.48646 3.50735 3.64217 3.83394 3.85688 4.02973 4.17572 4.19082 4.31185 4.33593 4.34226 4.38363 4.41470 4.47791 4.59757 4.64657 4.69975 4.72269 4.74174 4.76959 4.82348 4.91211 4.95294 4.98574 5.00546 5.05423 5.07291 5.11228 5.14941 5.23395 5.32376 5.37217 5.39313 5.43251 5.47497 5.52314 5.86475 6.29389 6.45132 6.79581 7.07386 7.35671 8.12879 8.35014 9.31895 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024643 B = 0.002314 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.959833 B =12096.153779 C =12760.815856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.142 4.142 4 C 0.034 3.966 5 C -0.200 4.200 6 C -0.038 4.038 7 C 0.607 3.393 8 O -0.584 6.584 9 N -0.606 5.606 10 C 0.110 3.890 11 C -0.112 4.112 12 C -0.071 4.071 13 C -0.120 4.120 14 C 0.169 3.831 15 N -0.745 5.745 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.975 3.025 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.278 1.278 24 C 0.124 3.876 25 N -0.259 5.259 26 N -0.273 5.273 27 C 0.071 3.929 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.034 0.966 45 H 0.373 0.627 46 H 0.249 0.751 47 H 0.048 0.952 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.106 0.894 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 2.828 -34.911 35.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.091 4.091 5 C -0.229 4.229 6 C -0.195 4.195 7 C 0.396 3.604 8 O -0.463 6.463 9 N -0.337 5.337 10 C -0.012 4.012 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.177 4.177 14 C 0.042 3.958 15 N -0.388 5.388 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.204 1.204 24 C 0.001 3.999 25 N -0.096 5.096 26 N -0.062 5.062 27 C -0.068 4.068 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.205 0.795 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.125 0.875 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.830 2.276 -34.631 35.192 hybrid contribution -1.382 0.492 1.773 2.301 sum 4.448 2.768 -32.858 33.273 Atomic orbital electron populations 1.21855 0.93057 1.02326 1.03078 1.19850 0.96728 0.95675 0.91588 1.21845 1.01252 0.93992 1.02937 1.21762 0.90203 0.99008 0.98161 1.21543 1.03391 1.05453 0.92468 1.21486 0.97840 1.06358 0.93843 1.17001 0.81226 0.77448 0.84713 1.90773 1.32314 1.54576 1.68646 1.48673 1.26064 1.47639 1.11368 1.22360 0.83783 0.98353 0.96718 1.22609 0.98108 1.03437 0.90873 1.21662 0.93613 0.96396 0.95538 1.21593 1.01546 0.94680 0.99924 1.20804 0.95285 0.94602 0.85114 1.42660 1.58714 1.30595 1.06861 1.19634 1.23594 1.05782 0.88280 0.90219 1.25612 1.00763 0.98994 1.01877 1.69844 1.37284 1.24740 1.30552 0.85180 0.77484 0.77628 0.79273 1.20123 1.22553 1.20370 1.22322 0.97611 0.99516 0.80456 1.73526 1.22598 1.21205 0.92304 1.45890 1.19643 1.32928 1.07700 1.22673 0.93244 1.05434 0.85403 0.89574 0.92821 0.93142 0.87085 0.89551 0.93621 0.92338 0.83208 0.90468 0.88437 0.88366 0.88488 0.93332 0.94928 0.91094 0.95361 0.94769 0.79452 0.94187 0.93345 0.91093 0.87915 0.87493 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.78 71.98 0.63 -0.79 16 2 C -0.02 -0.17 3.10 -11.54 -0.04 -0.20 16 3 C -0.14 -1.16 9.18 71.98 0.66 -0.50 16 4 C 0.03 0.59 5.84 41.40 0.24 0.83 16 5 C -0.20 -5.20 9.96 22.41 0.22 -4.98 16 6 C -0.04 -1.14 6.99 42.46 0.30 -0.85 16 7 C 0.61 22.96 7.90 86.75 0.69 23.64 16 8 O -0.58 -27.00 17.13 -3.95 -0.07 -27.06 16 9 N -0.61 -20.56 3.19 -813.64 -2.60 -23.16 16 10 C 0.11 2.72 6.27 86.53 0.54 3.27 16 11 C -0.11 -2.66 6.09 31.48 0.19 -2.47 16 12 C -0.07 -2.38 0.65 -51.09 -0.03 -2.42 16 13 C -0.12 -4.26 8.31 71.98 0.60 -3.66 16 14 C 0.17 6.73 5.11 86.38 0.44 7.17 16 15 N -0.75 -39.08 5.16 -343.45 -1.77 -40.85 16 16 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 18 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 19 N -0.97 -62.62 13.06 21.65 0.28 -62.34 16 20 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 C 0.12 4.72 5.65 86.61 0.49 5.21 16 25 N -0.26 -6.15 9.20 -48.17 -0.44 -6.60 16 26 N -0.27 -4.47 3.70 -355.92 -1.32 -5.79 16 27 C 0.07 0.33 11.11 127.77 1.42 1.75 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.65 7.35 -2.39 -0.02 0.63 16 31 H 0.11 0.35 6.86 -2.39 -0.02 0.33 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.04 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.15 4.01 7.47 -2.91 -0.02 3.98 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.25 6.20 -2.38 -0.01 2.24 16 38 H 0.10 1.99 7.85 -2.39 -0.02 1.98 16 39 H 0.10 1.93 7.87 -2.39 -0.02 1.91 16 40 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 41 H 0.03 1.39 6.69 -2.39 -0.02 1.37 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.37 21.34 6.21 -92.71 -0.58 20.76 16 46 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 47 H 0.05 2.24 7.75 -2.39 -0.02 2.22 16 48 H 0.07 2.73 8.01 -2.39 -0.02 2.71 16 49 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 50 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 51 H 0.12 -0.16 6.87 -2.39 -0.02 -0.18 16 Total: -1.00 -82.16 405.57 4.11 -78.04 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.34 Total: 29.32 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.66 Total: 8.71 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -5.85 Total: -138.73 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.07 Total: -27.06 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.16 4.11 -78.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278491373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.846 kcal (2) G-P(sol) polarization free energy of solvation -82.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds