Wall clock time and date at job start Tue Mar 31 2020 19:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 C 1.50699 * 109.47184 * 120.00051 * 2 1 3 5 5 N 1.30449 * 125.98814 * 300.02445 * 4 2 1 6 6 N 1.39934 * 108.89622 * 179.97438 * 5 4 2 7 7 C 1.46495 * 125.75487 * 179.97438 * 6 5 4 8 8 C 1.34265 * 108.49197 * 359.75480 * 6 5 4 9 9 C 1.38042 * 107.41514 * 0.39154 * 8 6 5 10 10 C 1.47429 * 126.41543 * 179.87133 * 9 8 6 11 11 O 1.21600 * 120.00563 * 188.29866 * 10 9 8 12 12 N 1.34783 * 119.99622 * 8.02730 * 10 9 8 13 13 C 1.47482 * 127.03697 * 358.84246 * 12 10 9 14 14 C 1.54001 * 107.08460 * 154.51514 * 13 12 10 15 15 C 1.54616 * 105.04726 * 1.30523 * 14 13 12 16 16 C 1.53000 * 110.73981 * 263.51465 * 15 14 13 17 17 C 1.53003 * 110.74053 * 140.18149 * 15 14 13 18 18 N 1.46501 * 109.46899 * 180.02562 * 17 15 14 19 19 C 1.36942 * 119.99448 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00335 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99500 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00329 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47113 * 119.99978 * 23 21 19 26 26 H 1.48503 * 109.47179 * 239.99729 * 23 21 19 27 27 C 1.48121 * 127.02921 * 178.52587 * 12 10 9 28 28 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47574 * 299.99689 * 1 2 3 30 30 H 1.09000 * 109.47344 * 60.00040 * 1 2 3 31 31 H 1.09001 * 109.47094 * 240.00085 * 2 1 3 32 32 H 1.08996 * 109.47460 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46865 * 300.00254 * 3 2 1 34 34 H 1.09001 * 109.46952 * 59.99998 * 3 2 1 35 35 H 1.09004 * 109.46909 * 89.98036 * 7 6 5 36 36 H 1.08997 * 109.47431 * 209.97797 * 7 6 5 37 37 H 1.08997 * 109.47299 * 329.98219 * 7 6 5 38 38 H 1.08001 * 126.29474 * 180.26009 * 8 6 5 39 39 H 1.09000 * 109.91258 * 273.87911 * 13 12 10 40 40 H 1.09006 * 109.91326 * 34.96442 * 13 12 10 41 41 H 1.09004 * 110.32460 * 120.20132 * 14 13 12 42 42 H 1.08999 * 110.32527 * 242.31179 * 14 13 12 43 43 H 1.08994 * 109.47131 * 60.00114 * 16 15 14 44 44 H 1.08999 * 109.46737 * 179.97438 * 16 15 14 45 45 H 1.09003 * 109.46616 * 299.99425 * 16 15 14 46 46 H 1.08997 * 109.47127 * 300.00494 * 17 15 14 47 47 H 1.08999 * 109.46590 * 60.00580 * 17 15 14 48 48 H 0.96988 * 120.00046 * 0.02562 * 18 17 15 49 49 H 0.96992 * 120.00344 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.66341 * 337.76623 * 27 12 10 51 51 H 1.09001 * 110.66269 * 100.88836 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7899 -0.3684 2.4657 6 7 2.4293 -1.2733 3.3204 7 6 2.4014 -1.2339 4.7845 8 6 3.0686 -2.1866 2.5722 9 6 2.8479 -1.8640 1.2483 10 6 3.3618 -2.5907 0.0730 11 8 3.2233 -2.1217 -1.0404 12 7 3.9901 -3.7723 0.2330 13 6 4.2679 -4.4656 1.5047 14 6 4.3846 -5.9676 1.1851 15 6 4.1890 -6.0687 -0.3453 16 6 2.7374 -6.4136 -0.6843 17 6 5.1471 -7.0987 -0.9471 18 7 4.9389 -7.1714 -2.3954 19 6 5.6885 -8.0318 -3.1524 20 1 6.4328 -8.6569 -2.6818 21 6 5.4916 -8.1003 -4.5248 22 7 4.5841 -7.3389 -5.0984 23 14 6.5147 -9.2734 -5.5576 24 1 7.4582 -10.0115 -4.6799 25 1 5.6188 -10.2383 -6.2444 26 1 7.2808 -8.5026 -6.5697 27 6 4.5369 -4.6434 -0.8329 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5549 -1.8169 5.1476 36 1 3.3272 -1.6544 5.1770 37 1 2.3011 -0.2012 5.1184 38 1 3.6506 -3.0193 2.9387 39 1 5.2040 -4.1024 1.9287 40 1 3.4516 -4.2948 2.2067 41 1 5.3700 -6.3391 1.4663 42 1 3.6071 -6.5269 1.7055 43 1 2.0791 -5.6365 -0.2961 44 1 2.6228 -6.4792 -1.7663 45 1 2.4763 -7.3704 -0.2323 46 1 6.1755 -6.8011 -0.7427 47 1 4.9562 -8.0755 -0.5027 48 1 4.2701 -6.6103 -2.8180 49 1 4.4463 -7.3870 -6.0573 50 1 4.0519 -4.4350 -1.7865 51 1 5.6169 -4.5199 -0.9142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278582700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:34 Heat of formation + Delta-G solvation = 56.624333 kcal Electronic energy + Delta-G solvation = -29760.988696 eV Core-core repulsion = 25890.542134 eV Total energy + Delta-G solvation = -3870.446562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -41.69929 -39.78445 -37.74265 -35.88553 -34.77712 -32.90811 -32.48889 -30.69979 -30.29717 -29.15504 -27.36641 -27.16006 -26.42748 -25.47115 -23.94057 -22.66644 -22.31260 -21.60942 -20.03921 -18.97544 -18.71806 -17.33429 -16.65410 -16.38942 -16.03317 -15.67378 -15.27545 -14.87902 -14.61098 -14.49176 -14.23002 -13.86007 -13.73894 -13.55004 -13.34184 -13.24984 -13.14409 -12.84830 -12.60156 -12.45976 -12.20007 -12.17803 -12.00388 -11.63218 -11.51639 -11.29582 -11.22179 -11.08271 -10.97742 -10.82278 -10.77681 -10.48554 -10.44015 -10.25837 -9.91415 -9.62713 -9.54265 -9.52076 -8.85990 -8.84224 -8.45169 -6.88401 -5.72438 -3.01414 1.34045 2.07895 2.10016 3.13592 3.46012 3.50389 3.51175 3.53831 4.07588 4.30023 4.54416 4.56824 4.64255 4.69230 4.70930 4.87571 4.96473 4.97019 5.06361 5.16597 5.19359 5.29231 5.36242 5.45126 5.50806 5.51378 5.61660 5.62529 5.77014 5.80297 5.85045 5.87458 5.98331 6.01423 6.11258 6.13548 6.20902 6.21205 6.23960 6.33855 6.42621 6.46508 6.56014 6.62219 6.69423 6.78943 6.88373 7.41916 7.73476 7.75078 8.40786 8.46007 9.57368 10.14953 10.49288 11.50242 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002702 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.397300 B =10361.090474 C =11476.643863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.298 5.298 6 N -0.366 5.366 7 C 0.098 3.902 8 C 0.082 3.918 9 C -0.277 4.277 10 C 0.609 3.391 11 O -0.537 6.537 12 N -0.616 5.616 13 C 0.092 3.908 14 C -0.124 4.124 15 C -0.079 4.079 16 C -0.129 4.129 17 C 0.170 3.830 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.123 3.877 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.193 0.807 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.021 0.979 47 H 0.023 0.977 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.090 0.910 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 12.830 22.885 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.025 4.025 5 N -0.119 5.119 6 N -0.144 5.144 7 C -0.043 4.043 8 C -0.069 4.069 9 C -0.292 4.292 10 C 0.399 3.601 11 O -0.415 6.415 12 N -0.350 5.350 13 C -0.032 4.032 14 C -0.163 4.163 15 C -0.080 4.080 16 C -0.186 4.186 17 C 0.041 3.959 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.001 3.999 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.210 0.790 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.859 13.903 23.192 27.668 hybrid contribution 0.861 -1.258 -0.922 1.782 sum -4.998 12.645 22.270 26.093 Atomic orbital electron populations 1.21780 0.93955 1.01990 1.01970 1.19988 0.95884 0.95811 0.93547 1.21756 1.01184 0.94680 1.01895 1.22391 0.93922 0.92872 0.93356 1.77124 1.20327 1.14306 1.00134 1.48346 1.38293 1.20787 1.06995 1.21954 1.03644 1.05025 0.73676 1.23841 0.97048 0.94721 0.91250 1.20253 1.13176 1.03295 0.92485 1.16818 0.76815 0.78968 0.87516 1.90736 1.58450 1.66630 1.25650 1.48625 1.57533 1.19962 1.08871 1.22431 1.00160 0.93321 0.87260 1.22588 1.02950 0.94157 0.96591 1.21800 0.97456 0.95180 0.93577 1.21699 0.93762 1.00080 1.03106 1.20618 0.94497 0.94382 0.86361 1.42419 1.45632 1.48854 1.00683 1.19242 1.13748 1.14763 0.89351 0.91200 1.24740 0.99417 1.00040 0.96728 1.69666 1.35969 1.42229 1.10034 0.86142 0.79403 0.80301 0.80468 1.20633 1.21938 1.21907 1.22496 0.98718 0.87104 0.91586 0.92708 0.92526 0.91886 0.86409 0.92680 0.91929 0.92577 0.90327 0.89161 0.88953 0.79036 0.91523 0.90837 0.90178 0.90562 0.93682 0.91089 0.92812 0.96141 0.95964 0.77976 0.93528 0.89136 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.17 37.15 0.34 -1.20 16 2 C -0.03 -0.41 3.26 -91.77 -0.30 -0.71 16 3 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 4 C 0.14 1.93 5.77 -82.02 -0.47 1.46 16 5 N -0.30 -3.74 12.50 33.90 0.42 -3.32 16 6 N -0.37 -3.51 3.98 -67.60 -0.27 -3.78 16 7 C 0.10 0.44 11.44 59.84 0.68 1.13 16 8 C 0.08 0.81 9.89 -16.56 -0.16 0.64 16 9 C -0.28 -3.76 6.08 -105.07 -0.64 -4.39 16 10 C 0.61 9.80 7.88 -12.51 -0.10 9.70 16 11 O -0.54 -10.50 14.84 5.28 0.08 -10.43 16 12 N -0.62 -8.83 3.19 -171.23 -0.55 -9.38 16 13 C 0.09 0.92 5.41 -2.98 -0.02 0.90 16 14 C -0.12 -1.36 6.09 -25.36 -0.15 -1.52 16 15 C -0.08 -1.22 0.65 -152.81 -0.10 -1.31 16 16 C -0.13 -2.09 8.31 37.16 0.31 -1.78 16 17 C 0.17 3.24 5.11 -4.04 -0.02 3.22 16 18 N -0.73 -18.08 5.16 -59.91 -0.31 -18.39 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.12 2.05 5.65 -2.31 -0.01 2.03 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 1.79 5.66 -51.93 -0.29 1.49 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.19 1.24 4.83 -52.49 -0.25 0.98 16 39 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.07 0.58 5.22 -51.93 -0.27 0.31 16 41 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 42 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 43 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.39 10.14 6.21 -40.82 -0.25 9.88 16 49 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.09 1.80 7.76 -51.93 -0.40 1.40 16 51 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -35.12 403.01 -7.91 -43.03 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.51 Total: 6.62 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.55 Total: -0.29 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.02 Total: -62.47 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.12 -7.91 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278582700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.652 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.56 seconds