Wall clock time and date at job start Tue Mar 31 2020 19:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 C 1.50699 * 109.47184 * 120.00051 * 2 1 3 5 5 N 1.30449 * 125.98814 * 300.02445 * 4 2 1 6 6 N 1.39934 * 108.89622 * 179.97438 * 5 4 2 7 7 C 1.46495 * 125.75487 * 179.97438 * 6 5 4 8 8 C 1.34265 * 108.49197 * 359.75480 * 6 5 4 9 9 C 1.38042 * 107.41514 * 0.39154 * 8 6 5 10 10 C 1.47429 * 126.41543 * 179.87133 * 9 8 6 11 11 O 1.21600 * 120.00563 * 188.29866 * 10 9 8 12 12 N 1.34783 * 119.99622 * 8.02730 * 10 9 8 13 13 C 1.47482 * 127.03697 * 358.84246 * 12 10 9 14 14 C 1.54001 * 107.08460 * 154.51514 * 13 12 10 15 15 C 1.54616 * 105.04726 * 1.30523 * 14 13 12 16 16 C 1.53000 * 110.73981 * 263.51465 * 15 14 13 17 17 C 1.53003 * 110.74053 * 140.18149 * 15 14 13 18 18 N 1.46501 * 109.46899 * 180.02562 * 17 15 14 19 19 C 1.36942 * 119.99448 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00335 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99500 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00329 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47113 * 119.99978 * 23 21 19 26 26 H 1.48503 * 109.47179 * 239.99729 * 23 21 19 27 27 C 1.48121 * 127.02921 * 178.52587 * 12 10 9 28 28 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47574 * 299.99689 * 1 2 3 30 30 H 1.09000 * 109.47344 * 60.00040 * 1 2 3 31 31 H 1.09001 * 109.47094 * 240.00085 * 2 1 3 32 32 H 1.08996 * 109.47460 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46865 * 300.00254 * 3 2 1 34 34 H 1.09001 * 109.46952 * 59.99998 * 3 2 1 35 35 H 1.09004 * 109.46909 * 89.98036 * 7 6 5 36 36 H 1.08997 * 109.47431 * 209.97797 * 7 6 5 37 37 H 1.08997 * 109.47299 * 329.98219 * 7 6 5 38 38 H 1.08001 * 126.29474 * 180.26009 * 8 6 5 39 39 H 1.09000 * 109.91258 * 273.87911 * 13 12 10 40 40 H 1.09006 * 109.91326 * 34.96442 * 13 12 10 41 41 H 1.09004 * 110.32460 * 120.20132 * 14 13 12 42 42 H 1.08999 * 110.32527 * 242.31179 * 14 13 12 43 43 H 1.08994 * 109.47131 * 60.00114 * 16 15 14 44 44 H 1.08999 * 109.46737 * 179.97438 * 16 15 14 45 45 H 1.09003 * 109.46616 * 299.99425 * 16 15 14 46 46 H 1.08997 * 109.47127 * 300.00494 * 17 15 14 47 47 H 1.08999 * 109.46590 * 60.00580 * 17 15 14 48 48 H 0.96988 * 120.00046 * 0.02562 * 18 17 15 49 49 H 0.96992 * 120.00344 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.66341 * 337.76623 * 27 12 10 51 51 H 1.09001 * 110.66269 * 100.88836 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7899 -0.3684 2.4657 6 7 2.4293 -1.2733 3.3204 7 6 2.4014 -1.2339 4.7845 8 6 3.0686 -2.1866 2.5722 9 6 2.8479 -1.8640 1.2483 10 6 3.3618 -2.5907 0.0730 11 8 3.2233 -2.1217 -1.0404 12 7 3.9901 -3.7723 0.2330 13 6 4.2679 -4.4656 1.5047 14 6 4.3846 -5.9676 1.1851 15 6 4.1890 -6.0687 -0.3453 16 6 2.7374 -6.4136 -0.6843 17 6 5.1471 -7.0987 -0.9471 18 7 4.9389 -7.1714 -2.3954 19 6 5.6885 -8.0318 -3.1524 20 1 6.4328 -8.6569 -2.6818 21 6 5.4916 -8.1003 -4.5248 22 7 4.5841 -7.3389 -5.0984 23 14 6.5147 -9.2734 -5.5576 24 1 7.4582 -10.0115 -4.6799 25 1 5.6188 -10.2383 -6.2444 26 1 7.2808 -8.5026 -6.5697 27 6 4.5369 -4.6434 -0.8329 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5549 -1.8169 5.1476 36 1 3.3272 -1.6544 5.1770 37 1 2.3011 -0.2012 5.1184 38 1 3.6506 -3.0193 2.9387 39 1 5.2040 -4.1024 1.9287 40 1 3.4516 -4.2948 2.2067 41 1 5.3700 -6.3391 1.4663 42 1 3.6071 -6.5269 1.7055 43 1 2.0791 -5.6365 -0.2961 44 1 2.6228 -6.4792 -1.7663 45 1 2.4763 -7.3704 -0.2323 46 1 6.1755 -6.8011 -0.7427 47 1 4.9562 -8.0755 -0.5027 48 1 4.2701 -6.6103 -2.8180 49 1 4.4463 -7.3870 -6.0573 50 1 4.0519 -4.4350 -1.7865 51 1 5.6169 -4.5199 -0.9142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278582700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:30 Heat of formation + Delta-G solvation = 33.023295 kcal Electronic energy + Delta-G solvation = -29762.012113 eV Core-core repulsion = 25890.542134 eV Total energy + Delta-G solvation = -3871.469980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -42.57440 -40.92832 -39.00324 -36.85365 -36.36276 -34.40361 -33.37078 -32.26566 -31.39117 -30.36627 -28.14694 -28.06260 -27.73065 -27.01101 -25.34509 -23.81638 -23.53161 -22.53655 -21.06633 -20.17327 -19.80263 -19.14302 -17.76516 -17.35138 -17.16702 -16.62954 -16.48761 -16.19677 -15.81114 -15.46773 -15.39857 -15.38802 -15.10066 -14.79263 -14.48759 -14.24753 -14.22403 -13.88017 -13.55058 -13.43062 -13.38215 -13.32066 -12.99863 -12.97344 -12.82183 -12.77164 -12.56991 -12.26109 -12.14509 -12.08389 -12.03525 -12.00685 -11.73487 -11.64312 -11.45700 -11.34015 -10.92827 -10.72954 -10.36202 -9.83843 -9.50263 -8.94672 -7.91325 -5.19712 0.51389 1.08082 1.44329 1.47972 1.49206 1.59090 2.03538 2.40342 2.58332 3.28645 3.41972 3.50378 3.57609 3.65829 3.89290 3.92520 4.02739 4.16622 4.22864 4.23704 4.30403 4.36455 4.37263 4.44665 4.46943 4.55454 4.60171 4.67679 4.74210 4.75578 4.76140 4.83599 4.90492 4.90828 4.93442 5.00745 5.07908 5.08870 5.11425 5.17292 5.27523 5.29766 5.35965 5.41756 5.50384 5.53869 5.54779 5.91546 6.30480 6.51664 6.67569 7.24043 7.36717 8.15110 8.35893 9.32664 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002702 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.397300 B =10361.090474 C =11476.643863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.129 4.129 4 C 0.126 3.874 5 N -0.316 5.316 6 N -0.357 5.357 7 C 0.085 3.915 8 C 0.111 3.889 9 C -0.315 4.315 10 C 0.601 3.399 11 O -0.591 6.591 12 N -0.615 5.615 13 C 0.086 3.914 14 C -0.113 4.113 15 C -0.073 4.073 16 C -0.121 4.121 17 C 0.167 3.833 18 N -0.746 5.746 19 C -0.237 4.237 20 H 0.080 0.920 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.972 3.028 24 H -0.262 1.262 25 H -0.295 1.295 26 H -0.298 1.298 27 C 0.126 3.874 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.069 0.931 46 H 0.029 0.971 47 H 0.033 0.967 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.041 0.959 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 11.995 27.520 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.041 4.041 5 N -0.137 5.137 6 N -0.134 5.134 7 C -0.054 4.054 8 C -0.042 4.042 9 C -0.329 4.329 10 C 0.393 3.607 11 O -0.473 6.473 12 N -0.347 5.347 13 C -0.035 4.035 14 C -0.151 4.151 15 C -0.074 4.074 16 C -0.178 4.178 17 C 0.041 3.959 18 N -0.389 5.389 19 C -0.369 4.369 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.223 1.223 26 H -0.225 1.225 27 C 0.003 3.997 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.250 0.750 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.205 0.795 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.949 13.052 27.940 31.233 hybrid contribution 0.590 -0.987 -2.213 2.493 sum -4.359 12.065 25.728 28.748 Atomic orbital electron populations 1.21711 0.92847 1.01450 1.02861 1.19934 0.96851 0.96383 0.92672 1.21686 1.00333 0.93858 1.02802 1.22449 0.94504 0.93322 0.93846 1.77062 1.21204 1.15531 0.99921 1.48800 1.36511 1.19506 1.08597 1.22461 1.06370 1.06075 0.70464 1.24260 0.95538 0.94781 0.89622 1.20135 1.15437 1.04244 0.93132 1.17313 0.76390 0.79230 0.87752 1.90706 1.60562 1.68115 1.27917 1.48629 1.56793 1.19374 1.09919 1.22802 1.02926 0.92158 0.85608 1.22601 1.05105 0.95264 0.92111 1.21671 0.95704 0.92817 0.97195 1.21598 0.94778 1.01133 1.00305 1.20829 0.95814 0.95949 0.83345 1.42688 1.44948 1.48105 1.03147 1.19703 1.13192 1.14199 0.89836 0.90188 1.25588 1.01144 1.02301 0.98244 1.69849 1.38251 1.44539 1.09761 0.85077 0.77928 0.78114 0.78676 1.18594 1.22290 1.22512 1.22222 0.97805 0.88906 0.90749 0.93917 0.91781 0.90717 0.89589 0.93874 0.90734 0.91825 0.88605 0.85552 0.88653 0.75042 0.88350 0.87833 0.88134 0.88130 0.92992 0.95454 0.91249 0.95342 0.94936 0.79491 0.94258 0.94016 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.17 71.98 0.66 -2.34 16 2 C -0.04 -1.03 3.26 -11.54 -0.04 -1.07 16 3 C -0.13 -2.95 9.18 71.98 0.66 -2.29 16 4 C 0.13 3.43 5.77 43.51 0.25 3.68 16 5 N -0.32 -7.45 12.50 -46.68 -0.58 -8.03 16 6 N -0.36 -5.59 3.98 -367.79 -1.46 -7.06 16 7 C 0.08 0.37 11.44 127.77 1.46 1.83 16 8 C 0.11 1.77 9.89 84.27 0.83 2.60 16 9 C -0.31 -8.29 6.08 -20.15 -0.12 -8.41 16 10 C 0.60 19.94 7.88 86.66 0.68 20.63 16 11 O -0.59 -25.26 14.84 -4.03 -0.06 -25.32 16 12 N -0.61 -17.24 3.19 -813.91 -2.60 -19.84 16 13 C 0.09 1.35 5.41 86.53 0.47 1.82 16 14 C -0.11 -1.97 6.09 31.48 0.19 -1.78 16 15 C -0.07 -2.17 0.65 -51.08 -0.03 -2.20 16 16 C -0.12 -3.93 8.31 71.98 0.60 -3.33 16 17 C 0.17 6.23 5.11 86.38 0.44 6.67 16 18 N -0.75 -37.81 5.16 -343.45 -1.77 -39.58 16 19 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 22 N -0.97 -61.76 13.06 21.65 0.28 -61.47 16 23 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 27 C 0.13 4.36 5.65 86.61 0.49 4.85 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 2.90 5.66 -2.39 -0.01 2.89 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.13 -0.30 8.14 -2.39 -0.02 -0.31 16 37 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.23 1.54 4.83 -2.91 -0.01 1.52 16 39 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 40 H 0.10 1.03 5.22 -2.38 -0.01 1.01 16 41 H 0.10 1.44 7.85 -2.38 -0.02 1.42 16 42 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 43 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 44 H 0.03 1.11 6.69 -2.39 -0.02 1.09 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.37 20.76 6.21 -92.72 -0.58 20.18 16 49 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.04 1.83 7.76 -2.39 -0.02 1.81 16 51 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -83.73 403.01 4.03 -79.70 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.35 Total: 28.62 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 7.85 Total: 3.95 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -6.13 Total: -135.99 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.73 4.03 -79.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278582700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.721 kcal (2) G-P(sol) polarization free energy of solvation -83.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds