Wall clock time and date at job start Tue Mar 31 2020 19:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.50695 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99014 * 270.20620 * 4 3 2 6 6 N 1.39937 * 108.89772 * 180.26542 * 5 4 3 7 7 H 0.96995 * 125.75486 * 179.70090 * 6 5 4 8 8 C 1.34261 * 108.48885 * 359.71671 * 6 5 4 9 9 C 1.38036 * 107.41873 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41725 * 180.02562 * 9 8 6 11 11 O 1.21596 * 120.00629 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99630 * 359.74781 * 10 9 8 13 13 C 1.46498 * 120.00107 * 180.27813 * 12 10 9 14 14 C 1.52998 * 109.47209 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.46331 * 60.02569 * 14 13 12 16 16 C 1.53038 * 109.45769 * 300.06423 * 14 13 12 17 17 C 1.53187 * 109.31439 * 178.61769 * 16 14 13 18 18 N 1.46928 * 108.77767 * 54.63267 * 17 16 14 19 19 C 1.36941 * 120.63276 * 126.41476 * 18 17 16 20 20 H 1.07998 * 120.00306 * 207.66191 * 19 18 17 21 21 C 1.38811 * 119.99535 * 27.65947 * 19 18 17 22 22 N 1.31614 * 120.00452 * 17.37746 * 21 19 18 23 23 Si 1.86807 * 119.99859 * 197.37971 * 21 19 18 24 24 H 1.48505 * 109.46675 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47399 * 119.99910 * 23 21 19 26 26 H 1.48495 * 109.46851 * 240.00422 * 23 21 19 27 27 C 1.46927 * 118.73824 * 306.39674 * 18 17 16 28 28 C 1.53046 * 109.46070 * 179.97438 * 14 13 12 29 29 H 1.08998 * 109.47293 * 300.00305 * 1 2 3 30 30 H 1.08997 * 109.46869 * 60.00379 * 1 2 3 31 31 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47293 * 239.99695 * 2 1 3 33 33 H 1.08997 * 109.46869 * 119.99621 * 2 1 3 34 34 H 1.09000 * 109.47055 * 59.99213 * 3 2 1 35 35 H 1.09004 * 109.47151 * 300.00227 * 3 2 1 36 36 H 1.08006 * 126.28793 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99918 * 0.27391 * 12 10 9 38 38 H 1.09001 * 109.47067 * 299.99972 * 13 12 10 39 39 H 1.08998 * 109.47583 * 59.99622 * 13 12 10 40 40 H 1.08997 * 109.46897 * 59.99862 * 15 14 13 41 41 H 1.08993 * 109.47269 * 180.02562 * 15 14 13 42 42 H 1.08999 * 109.46753 * 299.99857 * 15 14 13 43 43 H 1.09004 * 109.50007 * 298.56530 * 16 14 13 44 44 H 1.09000 * 109.49738 * 58.66476 * 16 14 13 45 45 H 1.09006 * 109.58597 * 294.85057 * 17 16 14 46 46 H 1.08999 * 109.58999 * 174.42255 * 17 16 14 47 47 H 0.96999 * 120.00341 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58852 * 293.81666 * 27 18 17 49 49 H 1.09001 * 109.70221 * 173.46373 * 27 18 17 50 50 H 1.08997 * 109.49761 * 301.33703 * 28 14 13 51 51 H 1.09003 * 109.49622 * 61.42825 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4389 1.0564 6 7 5.6508 1.4465 0.6457 7 1 6.4236 1.4499 1.2319 8 6 5.6841 1.4486 -0.6965 9 6 4.3777 1.4430 -1.1422 10 6 3.9325 1.4424 -2.5477 11 8 2.7451 1.4376 -2.8094 12 7 4.8418 1.4528 -3.5426 13 6 4.3994 1.4583 -4.9392 14 6 5.6206 1.4693 -5.8609 15 6 6.4677 0.2223 -5.5996 16 6 6.4570 2.7206 -5.5842 17 6 7.6965 2.7109 -6.4842 18 7 7.2651 2.5703 -7.8817 19 6 7.6776 3.4652 -8.8327 20 1 7.0626 3.6529 -9.7005 21 6 8.8861 4.1310 -8.6812 22 7 9.7864 3.6767 -7.8355 23 14 9.2346 5.6722 -9.6777 24 1 8.0700 5.9722 -10.5489 25 1 9.4710 6.8136 -8.7578 26 1 10.4395 5.4560 -10.5183 27 6 6.3830 1.4511 -8.2396 28 6 5.1582 1.4744 -7.3198 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.5703 1.4545 -1.3139 37 1 5.7890 1.4566 -3.3338 38 1 3.8046 0.5663 -5.1354 39 1 3.7952 2.3461 -5.1255 40 1 5.8721 -0.6692 -5.7960 41 1 7.3379 0.2302 -6.2559 42 1 6.7967 0.2178 -4.5605 43 1 5.8621 3.6096 -5.7939 44 1 6.7663 2.7276 -4.5390 45 1 8.3379 1.8721 -6.2138 46 1 8.2435 3.6458 -6.3630 47 1 10.6310 4.1418 -7.7299 48 1 6.9172 0.5096 -8.1122 49 1 6.0632 1.5523 -9.2767 50 1 4.5434 0.5947 -7.5097 51 1 4.5752 2.3749 -7.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278616224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:35 Heat of formation + Delta-G solvation = 33.786613 kcal Electronic energy + Delta-G solvation = -29532.590770 eV Core-core repulsion = 25661.153890 eV Total energy + Delta-G solvation = -3871.436880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.64907 -39.55542 -38.22095 -35.50513 -34.89032 -33.15072 -31.80514 -31.17720 -30.30035 -29.93375 -27.35721 -27.09629 -26.56712 -24.17453 -23.07364 -22.28428 -22.05776 -20.90002 -20.23804 -19.72367 -18.69912 -17.97210 -16.68275 -16.31672 -15.55262 -15.48687 -15.22709 -14.85142 -14.71873 -14.59822 -14.12149 -13.96520 -13.80821 -13.48526 -13.43123 -13.31970 -13.14800 -12.81491 -12.59970 -12.13642 -11.95620 -11.68852 -11.49101 -11.41016 -11.31129 -11.20258 -11.17890 -10.79053 -10.72916 -10.71458 -10.53479 -10.20692 -10.18321 -9.83972 -9.79934 -9.72645 -9.50640 -9.42124 -9.12180 -8.78068 -8.46687 -6.67055 -5.81105 -3.21986 1.28896 1.98235 2.43727 3.35294 3.36711 3.43806 3.45988 3.46231 4.23772 4.40098 4.48372 4.84082 4.95752 4.99434 5.07441 5.13861 5.18027 5.22930 5.26669 5.37233 5.40129 5.51190 5.61591 5.68166 5.76270 5.78041 5.87528 5.90159 5.98742 6.07499 6.12122 6.13630 6.14558 6.18955 6.29700 6.30752 6.46548 6.47241 6.57069 6.63515 6.69881 6.77902 6.82228 6.86710 6.99310 7.28342 7.34749 7.64120 7.66414 7.78793 8.37231 8.43512 9.20296 9.84033 10.40330 11.27346 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002483 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.060931 B =11272.721375 C =11974.809027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.138 3.862 5 N -0.300 5.300 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.105 3.895 9 C -0.284 4.284 10 C 0.589 3.411 11 O -0.544 6.544 12 N -0.721 5.721 13 C 0.132 3.868 14 C -0.064 4.064 15 C -0.141 4.141 16 C -0.129 4.129 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.248 4.248 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.186 0.814 37 H 0.396 0.604 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.020 0.980 46 H 0.085 0.915 47 H 0.252 0.748 48 H 0.020 0.980 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.832 -7.374 16.376 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.030 4.030 5 N -0.123 5.123 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.048 4.048 9 C -0.299 4.299 10 C 0.377 3.623 11 O -0.422 6.422 12 N -0.372 5.372 13 C 0.009 3.991 14 C -0.065 4.065 15 C -0.198 4.198 16 C -0.168 4.168 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.378 4.378 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.203 0.797 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.486 -7.307 17.450 21.630 hybrid contribution 1.473 0.855 -0.915 1.934 sum -9.013 -6.451 16.534 19.906 Atomic orbital electron populations 1.21736 0.95355 1.01613 1.01963 1.21360 0.95963 0.95438 1.02112 1.20228 0.85302 0.98692 1.04191 1.22465 0.97074 0.94810 0.88671 1.77159 0.86219 1.26378 1.22499 1.46104 1.07848 1.57185 1.05475 0.71164 1.23213 0.99163 0.96749 0.85713 1.20371 0.92029 1.22617 0.94855 1.17219 0.85705 0.75990 0.83429 1.90729 1.16273 1.50956 1.84250 1.45934 1.09488 1.75380 1.06433 1.21508 0.96799 1.01695 0.79085 1.20697 0.94012 0.96637 0.95126 1.21931 1.00721 0.96345 1.00828 1.22241 0.99799 0.95971 0.98790 1.20795 0.91028 1.01500 0.82162 1.44037 1.55524 1.27544 1.04307 1.19235 1.00122 1.15710 1.02745 0.91696 1.25007 0.95019 1.00404 0.99316 1.70033 1.06311 1.39063 1.39458 0.86259 0.77800 0.83453 0.79505 1.20264 1.21627 1.21790 1.20910 0.90084 0.91040 0.96038 1.21991 0.99303 1.00739 0.93919 0.92873 0.92205 0.92774 0.91446 0.92398 0.90708 0.87936 0.79686 0.76816 0.91916 0.91684 0.93376 0.90790 0.93856 0.92512 0.93831 0.96167 0.89680 0.93790 0.96190 0.92933 0.92909 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.04 -0.49 5.25 -27.89 -0.15 -0.64 16 4 C 0.14 1.66 6.52 -82.02 -0.53 1.13 16 5 N -0.30 -3.43 12.63 33.89 0.43 -3.00 16 6 N -0.46 -3.76 7.29 30.85 0.22 -3.53 16 7 H 0.44 2.01 8.96 -182.73 -1.64 0.37 16 8 C 0.10 0.88 11.52 -16.56 -0.19 0.69 16 9 C -0.28 -3.32 6.13 -105.07 -0.64 -3.97 16 10 C 0.59 8.02 7.81 -12.51 -0.10 7.92 16 11 O -0.54 -8.91 14.92 5.28 0.08 -8.83 16 12 N -0.72 -8.85 4.94 -61.38 -0.30 -9.15 16 13 C 0.13 1.82 4.56 -4.04 -0.02 1.80 16 14 C -0.06 -0.95 0.53 -154.47 -0.08 -1.03 16 15 C -0.14 -1.96 7.54 37.16 0.28 -1.68 16 16 C -0.13 -2.21 4.75 -26.61 -0.13 -2.33 16 17 C 0.17 3.76 4.84 -3.71 -0.02 3.75 16 18 N -0.59 -14.06 3.00 -172.32 -0.52 -14.57 16 19 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 22 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 23 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.15 2.88 6.04 -3.71 -0.02 2.86 16 28 C -0.12 -1.94 4.91 -26.61 -0.13 -2.08 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.27 6.56 -51.93 -0.34 0.93 16 36 H 0.19 0.90 7.46 -52.48 -0.39 0.51 16 37 H 0.40 4.13 5.08 -40.82 -0.21 3.92 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.22 4.98 -51.93 -0.26 0.96 16 42 H 0.04 0.52 6.86 -51.93 -0.36 0.16 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.64 6.82 -51.93 -0.35 0.29 16 45 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 46 H 0.09 2.16 6.04 -51.93 -0.31 1.85 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 49 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -32.21 393.57 -9.90 -42.11 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -9.59 Total: 2.14 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.75 Total: -2.61 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.45 Total: -55.06 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.21 -9.90 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278616224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.901 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds