Wall clock time and date at job start Tue Mar 31 2020 19:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.50695 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99014 * 270.20620 * 4 3 2 6 6 N 1.39937 * 108.89772 * 180.26542 * 5 4 3 7 7 H 0.96995 * 125.75486 * 179.70090 * 6 5 4 8 8 C 1.34261 * 108.48885 * 359.71671 * 6 5 4 9 9 C 1.38036 * 107.41873 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41725 * 180.02562 * 9 8 6 11 11 O 1.21596 * 120.00629 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99630 * 359.74781 * 10 9 8 13 13 C 1.46498 * 120.00107 * 180.27813 * 12 10 9 14 14 C 1.52998 * 109.47209 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.46331 * 60.02569 * 14 13 12 16 16 C 1.53038 * 109.45769 * 300.06423 * 14 13 12 17 17 C 1.53187 * 109.31439 * 178.61769 * 16 14 13 18 18 N 1.46928 * 108.77767 * 54.63267 * 17 16 14 19 19 C 1.36941 * 120.63276 * 126.41476 * 18 17 16 20 20 H 1.07998 * 120.00306 * 207.66191 * 19 18 17 21 21 C 1.38811 * 119.99535 * 27.65947 * 19 18 17 22 22 N 1.31614 * 120.00452 * 17.37746 * 21 19 18 23 23 Si 1.86807 * 119.99859 * 197.37971 * 21 19 18 24 24 H 1.48505 * 109.46675 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47399 * 119.99910 * 23 21 19 26 26 H 1.48495 * 109.46851 * 240.00422 * 23 21 19 27 27 C 1.46927 * 118.73824 * 306.39674 * 18 17 16 28 28 C 1.53046 * 109.46070 * 179.97438 * 14 13 12 29 29 H 1.08998 * 109.47293 * 300.00305 * 1 2 3 30 30 H 1.08997 * 109.46869 * 60.00379 * 1 2 3 31 31 H 1.08999 * 109.46740 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47293 * 239.99695 * 2 1 3 33 33 H 1.08997 * 109.46869 * 119.99621 * 2 1 3 34 34 H 1.09000 * 109.47055 * 59.99213 * 3 2 1 35 35 H 1.09004 * 109.47151 * 300.00227 * 3 2 1 36 36 H 1.08006 * 126.28793 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99918 * 0.27391 * 12 10 9 38 38 H 1.09001 * 109.47067 * 299.99972 * 13 12 10 39 39 H 1.08998 * 109.47583 * 59.99622 * 13 12 10 40 40 H 1.08997 * 109.46897 * 59.99862 * 15 14 13 41 41 H 1.08993 * 109.47269 * 180.02562 * 15 14 13 42 42 H 1.08999 * 109.46753 * 299.99857 * 15 14 13 43 43 H 1.09004 * 109.50007 * 298.56530 * 16 14 13 44 44 H 1.09000 * 109.49738 * 58.66476 * 16 14 13 45 45 H 1.09006 * 109.58597 * 294.85057 * 17 16 14 46 46 H 1.08999 * 109.58999 * 174.42255 * 17 16 14 47 47 H 0.96999 * 120.00341 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58852 * 293.81666 * 27 18 17 49 49 H 1.09001 * 109.70221 * 173.46373 * 27 18 17 50 50 H 1.08997 * 109.49761 * 301.33703 * 28 14 13 51 51 H 1.09003 * 109.49622 * 61.42825 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3131 1.4389 1.0564 6 7 5.6508 1.4465 0.6457 7 1 6.4236 1.4499 1.2319 8 6 5.6841 1.4486 -0.6965 9 6 4.3777 1.4430 -1.1422 10 6 3.9325 1.4424 -2.5477 11 8 2.7451 1.4376 -2.8094 12 7 4.8418 1.4528 -3.5426 13 6 4.3994 1.4583 -4.9392 14 6 5.6206 1.4693 -5.8609 15 6 6.4677 0.2223 -5.5996 16 6 6.4570 2.7206 -5.5842 17 6 7.6965 2.7109 -6.4842 18 7 7.2651 2.5703 -7.8817 19 6 7.6776 3.4652 -8.8327 20 1 7.0626 3.6529 -9.7005 21 6 8.8861 4.1310 -8.6812 22 7 9.7864 3.6767 -7.8355 23 14 9.2346 5.6722 -9.6777 24 1 8.0700 5.9722 -10.5489 25 1 9.4710 6.8136 -8.7578 26 1 10.4395 5.4560 -10.5183 27 6 6.3830 1.4511 -8.2396 28 6 5.1582 1.4744 -7.3198 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.5703 1.4545 -1.3139 37 1 5.7890 1.4566 -3.3338 38 1 3.8046 0.5663 -5.1354 39 1 3.7952 2.3461 -5.1255 40 1 5.8721 -0.6692 -5.7960 41 1 7.3379 0.2302 -6.2559 42 1 6.7967 0.2178 -4.5605 43 1 5.8621 3.6096 -5.7939 44 1 6.7663 2.7276 -4.5390 45 1 8.3379 1.8721 -6.2138 46 1 8.2435 3.6458 -6.3630 47 1 10.6310 4.1418 -7.7299 48 1 6.9172 0.5096 -8.1122 49 1 6.0632 1.5523 -9.2767 50 1 4.5434 0.5947 -7.5097 51 1 4.5752 2.3749 -7.5135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278616224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:33 Heat of formation + Delta-G solvation = 13.526847 kcal Electronic energy + Delta-G solvation = -29533.469299 eV Core-core repulsion = 25661.153890 eV Total energy + Delta-G solvation = -3872.315409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.43476 -40.74996 -39.48266 -36.61753 -36.07453 -34.59236 -32.77574 -32.54952 -31.54050 -31.29554 -28.63878 -28.12614 -27.71279 -25.80145 -24.17093 -23.67676 -22.89466 -22.35579 -21.22130 -20.60546 -19.68565 -19.36991 -18.18444 -17.47516 -16.78369 -16.57529 -16.43483 -16.03665 -15.80498 -15.55042 -15.41561 -15.35148 -14.98501 -14.91142 -14.72177 -14.42604 -14.24272 -13.94536 -13.89470 -13.37411 -13.10893 -12.94024 -12.87957 -12.63385 -12.55494 -12.44472 -12.30126 -12.18963 -12.15584 -11.97206 -11.85345 -11.75264 -11.55078 -11.40903 -11.10545 -11.00298 -10.76724 -10.51429 -10.46492 -10.08587 -9.69170 -8.59861 -7.84393 -5.27009 0.55897 1.10247 1.45386 1.48523 1.57846 1.80793 2.37140 2.50578 2.52995 3.29476 3.46260 3.74143 3.76602 3.86769 3.93500 4.00648 4.12919 4.17948 4.23432 4.37975 4.44063 4.49130 4.58113 4.61078 4.68333 4.77643 4.84728 4.88323 4.89643 4.91596 4.92528 5.00891 5.02028 5.12707 5.14557 5.19493 5.33731 5.35317 5.37151 5.43637 5.45768 5.46508 5.53956 5.56716 5.62326 5.71334 5.90638 6.26493 6.43697 6.49762 6.72950 7.20481 7.38646 7.93537 8.43052 9.21197 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002483 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.060931 B =11272.721375 C =11974.809027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.044 4.044 4 C 0.124 3.876 5 N -0.322 5.322 6 N -0.447 5.447 7 H 0.460 0.540 8 C 0.132 3.868 9 C -0.317 4.317 10 C 0.590 3.410 11 O -0.579 6.579 12 N -0.712 5.712 13 C 0.145 3.855 14 C -0.054 4.054 15 C -0.136 4.136 16 C -0.116 4.116 17 C 0.178 3.822 18 N -0.610 5.610 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.931 5.931 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.142 3.858 28 C -0.112 4.112 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.226 0.774 37 H 0.407 0.593 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.046 0.954 50 H 0.081 0.919 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 -8.095 17.724 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.083 4.083 4 C -0.044 4.044 5 N -0.145 5.145 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.023 4.023 9 C -0.332 4.332 10 C 0.379 3.621 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.021 3.979 14 C -0.054 4.054 15 C -0.193 4.193 16 C -0.155 4.155 17 C 0.053 3.947 18 N -0.334 5.334 19 C -0.388 4.388 20 H 0.078 0.922 21 C -0.245 4.245 22 N -0.577 5.577 23 Si 0.788 3.212 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.220 1.220 27 C 0.017 3.983 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.243 0.757 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.028 0.972 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.613 -8.041 18.826 23.058 hybrid contribution 1.558 1.042 -1.328 2.297 sum -9.055 -6.999 17.497 20.908 Atomic orbital electron populations 1.21720 0.94231 1.02278 1.02150 1.21288 0.96919 0.94749 1.01255 1.20184 0.85437 0.99026 1.03647 1.22615 0.97516 0.95091 0.89141 1.77103 0.87549 1.27184 1.22666 1.46150 1.07511 1.55691 1.05910 0.69118 1.23719 0.99158 0.93568 0.85837 1.20320 0.93549 1.25585 0.93745 1.17464 0.85264 0.75161 0.84239 1.90713 1.17782 1.52626 1.84835 1.45773 1.09953 1.75113 1.05576 1.21242 0.95732 1.01361 0.79558 1.20558 0.94256 0.96019 0.94572 1.21864 0.99538 0.96181 1.01714 1.22044 0.97576 0.96616 0.99225 1.20618 0.92663 0.98977 0.82453 1.44308 1.56027 1.28414 1.04637 1.19502 0.99968 1.16264 1.03098 0.92174 1.25663 0.95083 1.02927 1.00784 1.70160 1.06508 1.40083 1.40983 0.85330 0.77474 0.80223 0.78173 1.19534 1.21751 1.22006 1.21039 0.90752 0.89787 0.96708 1.21882 0.97667 1.01620 0.94014 0.91663 0.93024 0.91868 0.93317 0.92039 0.89825 0.89747 0.75741 0.75514 0.91413 0.93017 0.91776 0.93512 0.91481 0.94116 0.90925 0.97221 0.93492 0.94215 0.95922 0.93589 0.90076 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.10 -2.06 5.92 30.59 0.18 -1.88 16 3 C -0.04 -0.95 5.25 29.85 0.16 -0.80 16 4 C 0.12 2.86 6.52 43.51 0.28 3.15 16 5 N -0.32 -6.80 12.63 -46.68 -0.59 -7.39 16 6 N -0.45 -5.94 7.29 -56.32 -0.41 -6.35 16 7 H 0.46 2.63 8.96 -213.43 -1.91 0.72 16 8 C 0.13 1.75 11.52 84.27 0.97 2.73 16 9 C -0.32 -6.84 6.13 -20.15 -0.12 -6.96 16 10 C 0.59 15.16 7.81 86.66 0.68 15.84 16 11 O -0.58 -18.77 14.92 -4.02 -0.06 -18.83 16 12 N -0.71 -15.63 4.94 -466.38 -2.30 -17.93 16 13 C 0.15 3.67 4.56 86.38 0.39 4.06 16 14 C -0.05 -1.48 0.53 -52.16 -0.03 -1.51 16 15 C -0.14 -3.40 7.54 71.98 0.54 -2.86 16 16 C -0.12 -3.81 4.75 30.67 0.15 -3.67 16 17 C 0.18 7.90 4.84 86.36 0.42 8.32 16 18 N -0.61 -29.30 3.00 -699.11 -2.09 -31.40 16 19 C -0.26 -13.96 9.59 84.03 0.81 -13.16 16 20 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 21 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 22 N -0.93 -53.43 11.19 21.65 0.24 -53.18 16 23 Si 0.96 44.49 29.59 68.60 2.03 46.52 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 C 0.14 5.58 6.04 86.36 0.52 6.10 16 28 C -0.11 -3.47 4.91 30.67 0.15 -3.32 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 2.15 6.56 -2.38 -0.02 2.13 16 36 H 0.23 1.03 7.46 -2.91 -0.02 1.01 16 37 H 0.41 6.94 5.08 -92.71 -0.47 6.47 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.45 4.98 -2.39 -0.01 1.44 16 42 H 0.07 1.35 6.86 -2.39 -0.02 1.33 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.95 6.82 -2.39 -0.02 1.94 16 45 H 0.01 0.45 6.69 -2.38 -0.02 0.43 16 46 H 0.05 2.44 6.04 -2.39 -0.01 2.42 16 47 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 48 H 0.02 0.89 6.69 -2.39 -0.02 0.87 16 49 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 50 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.04 393.57 1.61 -70.44 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -1.44 Total: 16.08 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.23 Total: 2.05 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.15 Total: -116.26 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -72.04 1.61 -70.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278616224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.962 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds